View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13119_low_65 (Length: 236)
Name: NF13119_low_65
Description: NF13119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13119_low_65 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 27177876 - 27178078
Alignment:
| Q |
19 |
agtatactgttttcttttactatctatgaccctacacgccactcttgtttcatatttatgtataatacttgcaggacaaacttacaccagcttgcatatg |
118 |
Q |
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| T |
27177876 |
agtatactgttttcttttactatctatgaccctacacgccactcttgtttcatatttatgtataatacttgcaggacaaacttacaccagcttgcatatg |
27177975 |
T |
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| Q |
119 |
ttgtctttttctctgttatccacttcgaatgtggcaaatcaaacttcatttctcgtgaatgaatcaatttactgttttcattcttctagttcgtttccct |
218 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
27177976 |
ttgtctttttctctgatatccacttcgaatgtggcaaatcaaacttcatttctcgtgaatgaattaacttactgttttcattcttctagttcgtttccct |
27178075 |
T |
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| Q |
219 |
ttg |
221 |
Q |
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||| |
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| T |
27178076 |
ttg |
27178078 |
T |
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