View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13119_low_7 (Length: 654)

Name: NF13119_low_7
Description: NF13119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13119_low_7
NF13119_low_7
[»] chr4 (12 HSPs)
chr4 (1-438)||(39235759-39236196)
chr4 (445-639)||(39235430-39235624)
chr4 (1-139)||(20123617-20123755)
chr4 (524-639)||(39053772-39053887)
chr4 (151-214)||(55109771-55109834)
chr4 (381-438)||(20123575-20123632)
chr4 (292-359)||(17403739-17403806)
chr4 (298-350)||(53101484-53101536)
chr4 (300-350)||(19145561-19145611)
chr4 (549-639)||(39047770-39047860)
chr4 (289-380)||(55109595-55109694)
chr4 (575-639)||(39292530-39292594)
[»] chr7 (6 HSPs)
chr7 (445-639)||(7562773-7562967)
chr7 (1-132)||(8736841-8736971)
chr7 (151-214)||(34148370-34148432)
chr7 (151-214)||(34178692-34178754)
chr7 (292-350)||(42266154-42266212)
chr7 (381-438)||(8736963-8737020)
[»] chr6 (4 HSPs)
chr6 (1-131)||(31274629-31274760)
chr6 (297-362)||(18093556-18093621)
chr6 (151-226)||(18093688-18093762)
chr6 (295-350)||(15473089-15473144)
[»] chr3 (7 HSPs)
chr3 (4-114)||(23369679-23369789)
chr3 (286-352)||(11295020-11295086)
chr3 (286-344)||(31882082-31882140)
chr3 (158-214)||(20769516-20769572)
chr3 (159-214)||(11295160-11295215)
chr3 (381-438)||(23369788-23369845)
chr3 (286-358)||(31887972-31888044)
[»] chr2 (6 HSPs)
chr2 (287-362)||(35431381-35431456)
chr2 (154-225)||(35431517-35431588)
chr2 (292-360)||(28920307-28920375)
chr2 (292-362)||(33560398-33560468)
chr2 (154-225)||(3250091-3250162)
chr2 (287-362)||(3250222-3250297)
[»] chr8 (11 HSPs)
chr8 (286-362)||(30702406-30702482)
chr8 (151-226)||(30288621-30288696)
chr8 (289-362)||(30288483-30288556)
chr8 (286-362)||(18004478-18004554)
chr8 (165-226)||(18004359-18004420)
chr8 (158-226)||(30702275-30702343)
chr8 (292-362)||(6744398-6744468)
chr8 (292-362)||(6654660-6654730)
chr8 (292-362)||(6735062-6735132)
chr8 (154-214)||(13420009-13420069)
chr8 (292-350)||(23636717-23636775)
[»] chr1 (13 HSPs)
chr1 (292-362)||(51410916-51410986)
chr1 (151-226)||(28970637-28970712)
chr1 (288-362)||(32590667-32590741)
chr1 (60-132)||(26215976-26216049)
chr1 (292-352)||(3854164-3854224)
chr1 (292-352)||(43912955-43913015)
chr1 (151-226)||(51411052-51411126)
chr1 (292-362)||(4693992-4694062)
chr1 (292-352)||(42914024-42914084)
chr1 (298-350)||(50818429-50818481)
chr1 (292-358)||(51987640-51987706)
chr1 (381-438)||(6528479-6528536)
chr1 (157-226)||(43912823-43912891)
[»] chr5 (6 HSPs)
chr5 (292-352)||(35246202-35246262)
chr5 (37-139)||(21198000-21198101)
chr5 (292-350)||(24233704-24233762)
chr5 (292-362)||(42366309-42366379)
chr5 (299-362)||(22166511-22166574)
chr5 (292-362)||(6218664-6218734)
[»] scaffold0152 (4 HSPs)
scaffold0152 (37-139)||(1756-1857)
scaffold0152 (37-139)||(6003-6104)
scaffold0152 (37-139)||(15928-16029)
scaffold0152 (381-438)||(16014-16071)


Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-166; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 1 - 438
Target Start/End: Complemental strand, 39236196 - 39235759
Alignment:
Q  1 aataacattctcattaattgatgaataatgaaggagtacaacttatatagaagctaagtggtgtactatattacaatgagctgtagcttagagtattaga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  39236196 aataacattctcattaattgatgaataatgaaggagtacaacttatatagaagctaagtggtgtactatattacaatgaggtgtagcatagagtattaga 39236097  T
Q  101 actcttctaactaattgataactaactaaagcaagataannnnnnnnnnn-aagaagccaaaatgaaatattataaccaccaagagcaattcatctcgca 199  Q
    |||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39236096 actcttctaactaattgataactaactaaagcaagataatttttttcttttaagaagccaaaatgaaatattataaccaccaagagcaattcatctcgca 39235997  T
Q  200 caagacgtgcaaagaaaatcgctcctcnnnnnnntacaaagttcagatatctgttgccaacgctataaacaagnnnnnnnnnnnntaaacattactccat 299  Q
    ||||||||||||||||||||||||||        |||||||| ||||||||||||||||||||||||||||||             ||||||||||||||    
T  39235996 caagacgtgcaaagaaaatcgctcct-taaaaaatacaaagtccagatatctgttgccaacgctataaacaagaaaaagaaaaaagaaacattactccat 39235898  T
Q  300 aacacccatacaaatcaaagggtgctgtcaccagtcattataactgaaagctggagttagcctttaaccaagaaaaagacaaactaaagcaagataactt 399  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  39235897 aacacccatgcaaatcaaagggtgccgtcaccagtcattataactgaaagctgaagttagcctttaaccaagaaaaagacaaactaaagcaagataactt 39235798  T
Q  400 gttatgcaagttattacactaactacttcttattctcat 438  Q
    |||| |||||||||||||||||||||| |||||||||||    
T  39235797 gttacgcaagttattacactaactactccttattctcat 39235759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 445 - 639
Target Start/End: Complemental strand, 39235624 - 39235430
Alignment:
Q  445 aattcttatttttattttggattgacacagtttgttccaaaaatatttgttgggaatattttgcaagtttgtttattcattataaggagagacaaagaaa 544  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39235624 aattcttatttttattttggattgacacagtttgttccaaaaatatttgttgggaatattttgcaagtttgtttattcattataaggagagacaaagaaa 39235525  T
Q  545 caacgtatgatcttaccgagggtgtttttctgtcatctcacggagctccttcaaacaagggtgttcatttggaaacacacttgtgtcaagtatat 639  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||    
T  39235524 caacgtatgatcttaccgagggtgtttttctgtcatctcacggagctccttcaagcaagggtgttctcttggaaacacacttgtgtcaagtatat 39235430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 20123755 - 20123617
Alignment:
Q  1 aataacattctcattaattgatgaataatgaaggagtacaacttatatagaagctaagtggtgtactatattacaatgagctgtagcttagagtattaga 100  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||  ||| ||||||||||||    
T  20123755 aataatattctcattaattgatgaataatgaaggagtaaaacttatatagaagctaagtggtgcactatattacagtgagcttaagcatagagtattaga 20123656  T
Q  101 actcttctaactaattgataactaactaaagcaagataa 139  Q
    |||||||||||||| ||| ||||||||||||| ||||||    
T  20123655 actcttctaactaactgaaaactaactaaagctagataa 20123617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 524 - 639
Target Start/End: Complemental strand, 39053887 - 39053772
Alignment:
Q  524 ttataaggagagacaaagaaacaacgtatgatcttaccgagggtgtttttctgtcatctcacggagctccttcaaacaagggtgttcatttggaaacaca 623  Q
    ||||||||||||||||| ||  || ||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  39053887 ttataaggagagacaaacaattaaagtatgatcttaccgaggatgtttttctgtcatctcacgaagctccttcaagcaagggtgttcatttggaaacaca 39053788  T
Q  624 cttgtgtcaagtatat 639  Q
    ||||||||||||||||    
T  39053787 cttgtgtcaagtatat 39053772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 151 - 214
Target Start/End: Complemental strand, 55109834 - 55109771
Alignment:
Q  151 aagaagccaaaatgaaatattataaccaccaagagcaattcatctcgcacaagacgtgcaaaga 214  Q
    ||||| |||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||    
T  55109834 aagaacccaaaatgaaatattataaccaccaagagcaactcaactcgcacaaggcgtgcaaaga 55109771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 381 - 438
Target Start/End: Complemental strand, 20123632 - 20123575
Alignment:
Q  381 aactaaagcaagataacttgttatgcaagttattacactaactacttcttattctcat 438  Q
    ||||||||| |||||||||| || ||| |||||||||||||||||| |||||||||||    
T  20123632 aactaaagctagataacttgctacgcaggttattacactaactactccttattctcat 20123575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 292 - 359
Target Start/End: Complemental strand, 17403806 - 17403739
Alignment:
Q  292 tactccataacacccatacaaatcaaagggtgctgtcaccagtcattataactgaaagctggagttag 359  Q
    ||||||||||| |||||||||   ||||||||| | || |||||||||||||||||||||| ||||||    
T  17403806 tactccataacccccatacaagctaaagggtgccgccatcagtcattataactgaaagctgaagttag 17403739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 298 - 350
Target Start/End: Complemental strand, 53101536 - 53101484
Alignment:
Q  298 ataacacccatacaaatcaaagggtgctgtcaccagtcattataactgaaagc 350  Q
    ||||||||||| |||||||| || ||| | |||||||||||||||||||||||    
T  53101536 ataacacccatccaaatcaacggatgccgccaccagtcattataactgaaagc 53101484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 300 - 350
Target Start/End: Complemental strand, 19145611 - 19145561
Alignment:
Q  300 aacacccatacaaatcaaagggtgctgtcaccagtcattataactgaaagc 350  Q
    |||||||||||| |  ||||||||| | |||||||||||||||||||||||    
T  19145611 aacacccatacataataaagggtgccgccaccagtcattataactgaaagc 19145561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 549 - 639
Target Start/End: Complemental strand, 39047860 - 39047770
Alignment:
Q  549 gtatgatcttaccgagggtgtttttctgtcatctcacggagctccttcaaacaagggtgttcatttggaaacacacttgtgtcaagtatat 639  Q
    |||| ||||||| | | ||| |||||||| | |||||| ||||||||||| || ||||| ||  ||||||||||||| || ||||||||||    
T  39047860 gtataatcttactgtgagtggttttctgttaactcacgaagctccttcaagcatgggtgctctcttggaaacacactggtctcaagtatat 39047770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 289 - 380
Target Start/End: Complemental strand, 55109694 - 55109595
Alignment:
Q  289 cattactccataacacccatacaaatcaaagggtgctgtcaccagtcattataactgaaagctggag--------ttagcctttaaccaagaaaaagaca 380  Q
    |||||||||||||||||||| ||||| ||||   || | ||| ||||||||||||||||||| | ||        |||||||||||||||||||||||||    
T  55109694 cattactccataacacccatgcaaattaaagaacgccgccactagtcattataactgaaagcagaagttttgcttttagcctttaaccaagaaaaagaca 55109595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 575 - 639
Target Start/End: Original strand, 39292530 - 39292594
Alignment:
Q  575 tgtcatctcacggagctccttcaaacaagggtgttcatttggaaacacacttgtgtcaagtatat 639  Q
    ||||||||| |  ||||||||||| || ||||||||  |||||||||| ||||| ||||||||||    
T  39292530 tgtcatctccctaagctccttcaagcatgggtgttctcttggaaacacgcttgtttcaagtatat 39292594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 183; Significance: 1e-98; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 445 - 639
Target Start/End: Complemental strand, 7562967 - 7562773
Alignment:
Q  445 aattcttatttttattttggattgacacagtttgttccaaaaatatttgttgggaatattttgcaagtttgtttattcattataaggagagacaaagaaa 544  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7562967 aattcttatttttattttggattgacacagtttgttccaaaaatatttgttgggaatattttgcaagtttgtttattcattataaggagagacaaagaaa 7562868  T
Q  545 caacgtatgatcttaccgagggtgtttttctgtcatctcacggagctccttcaaacaagggtgttcatttggaaacacacttgtgtcaagtatat 639  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||    
T  7562867 caacgtatgatcttaccgagggtgtttttctgtcatctcacggagctccttcaagcaagggtgttctcttggaaacacacttgtgtcaagtatat 7562773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 8736841 - 8736971
Alignment:
Q  1 aataacattctcattaattgatgaataa-tgaaggagtacaacttatatagaagctaagtggtgtactatattacaatgagctgtagcttagagtattag 99  Q
    ||||| |||||||||||||||||||| | || || | |||||||||||||||  ||||||||||||||| |||||||||||   || | ||||||| ||     
T  8736841 aataatattctcattaattgatgaatgagtgtag-attacaacttatatagattctaagtggtgtactacattacaatgaggcataacatagagtagtaa 8736939  T
Q  100 aactcttctaactaattgataactaactaaagc 132  Q
    ||||||||||||||| ||| ||| |||||||||    
T  8736940 aactcttctaactaactga-aaccaactaaagc 8736971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 214
Target Start/End: Original strand, 34148370 - 34148432
Alignment:
Q  151 aagaagccaaaatgaaatattataaccaccaagagcaattcatctcgcacaagacgtgcaaaga 214  Q
    |||||| ||||||||||||  |||| |||||||||| ||||||||||||||||  |||||||||    
T  34148370 aagaagacaaaatgaaataa-ataatcaccaagagcgattcatctcgcacaaggtgtgcaaaga 34148432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 214
Target Start/End: Complemental strand, 34178754 - 34178692
Alignment:
Q  151 aagaagccaaaatgaaatattataaccaccaagagcaattcatctcgcacaagacgtgcaaaga 214  Q
    |||||| ||||||||||||  |||| |||||||||| ||||||||||||||||  |||||||||    
T  34178754 aagaagacaaaatgaaataa-ataatcaccaagagcgattcatctcgcacaaggtgtgcaaaga 34178692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 292 - 350
Target Start/End: Original strand, 42266154 - 42266212
Alignment:
Q  292 tactccataacacccatacaaatcaaagggtgctgtcaccagtcattataactgaaagc 350  Q
    |||||| |||||||||||||||  ||||||||| | |||| ||| ||||||||||||||    
T  42266154 tactccctaacacccatacaaagtaaagggtgccgccaccggtcgttataactgaaagc 42266212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 438
Target Start/End: Original strand, 8736963 - 8737020
Alignment:
Q  381 aactaaagcaagataacttgttatgcaagttattacactaactacttcttattctcat 438  Q
    ||||||||| ||| ||||||||  ||||||||||  | ||||||||||||||||||||    
T  8736963 aactaaagctagaaaacttgttgcgcaagttattgtattaactacttcttattctcat 8737020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 31274760 - 31274629
Alignment:
Q  1 aataacattctcattaattgatgaa-taatgaaggagtacaacttatatagaagctaagtggtgtactatattacaatgagctgtagcttagagtattag 99  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||| ||| ||||||||| |    
T  31274760 aataacattctcattaattgatgaaataatgaaggagtacaatttatatagaagctaagaggtatactatattacaatgagctgaagcatagagtattgg 31274661  T
Q  100 aactcttctaactaattgataactaactaaag 131  Q
    ||||||||||||||| ||  ||| ||||||||    
T  31274660 aactcttctaactaactgtaaacaaactaaag 31274629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 297 - 362
Target Start/End: Complemental strand, 18093621 - 18093556
Alignment:
Q  297 cataacacccatacaaatcaaagggtgctgtcaccagtcattataactgaaagctggagttagcct 362  Q
    |||||||||||||||| | ||||||||| | ||||||||||| ||||||||||||| || ||||||    
T  18093621 cataacacccatacaagttaaagggtgccgccaccagtcattgtaactgaaagctgaagctagcct 18093556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 151 - 226
Target Start/End: Complemental strand, 18093762 - 18093688
Alignment:
Q  151 aagaagccaaaatgaaatattataaccaccaagagcaattcatctcgcacaagacgtgcaaagaaaatcgctcctc 226  Q
    |||||||||||||||||| | |||| ||||| |||| ||||||||||||||||| |||| |||| |||| ||||||    
T  18093762 aagaagccaaaatgaaat-taataatcaccaggagcgattcatctcgcacaagatgtgctaagagaatcactcctc 18093688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 350
Target Start/End: Complemental strand, 15473144 - 15473089
Alignment:
Q  295 tccataacacccatacaaatcaaagggtgctgtcaccagtcattataactgaaagc 350  Q
    ||||||||||||||||| |  ||||||||| |  ||||||||||||||||||||||    
T  15473144 tccataacacccatacatagtaaagggtgccgcaaccagtcattataactgaaagc 15473089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 5e-39; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 23369679 - 23369789
Alignment:
Q  4 aacattctcattaattgatgaataatgaaggagtacaacttatatagaagctaagtggtgtactatattacaatgagctgtagcttagagtattagaact 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |  ||| |||||||||||||||    
T  23369679 aacattctcattaattgatgaataatgaaggagtacaacttatatagaaactaagtggtgtactatgttacaatgaggtcaagcatagagtattagaact 23369778  T
Q  104 cttctaactaa 114  Q
    | |||||||||    
T  23369779 catctaactaa 23369789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 286 - 352
Target Start/End: Complemental strand, 11295086 - 11295020
Alignment:
Q  286 aaacattactccataacacccatacaaatcaaagggtgctgtcaccagtcattataactgaaagctg 352  Q
    |||||||||||||||||| |||||||||| ||||| ||| | ||||| ||| |||||||||||||||    
T  11295086 aaacattactccataacatccatacaaattaaaggatgccgccaccaatcactataactgaaagctg 11295020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 286 - 344
Target Start/End: Original strand, 31882082 - 31882140
Alignment:
Q  286 aaacattactccataacacccatacaaatcaaagggtgctgtcaccagtcattataact 344  Q
    ||||||||||||||||||| ||||||||| ||||||||| | ||| |||||||||||||    
T  31882082 aaacattactccataacactcatacaaattaaagggtgccgccacgagtcattataact 31882140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 20769572 - 20769516
Alignment:
Q  158 caaaatgaaatattataaccaccaagagcaattcatctcgcacaagacgtgcaaaga 214  Q
    |||||||||||| ||||| || |||||||| ||||||||||||||| ||||||||||    
T  20769572 caaaatgaaataatataatcatcaagagcagttcatctcgcacaaggcgtgcaaaga 20769516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 159 - 214
Target Start/End: Complemental strand, 11295215 - 11295160
Alignment:
Q  159 aaaatgaaatattataaccaccaagagcaattcatctcgcacaagacgtgcaaaga 214  Q
    ||||||||||||||||| || ||| |||| ||||||| ||||||||||||||||||    
T  11295215 aaaatgaaatattataaacatcaatagcagttcatcttgcacaagacgtgcaaaga 11295160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 381 - 438
Target Start/End: Original strand, 23369788 - 23369845
Alignment:
Q  381 aactaaagcaagataacttgttatgcaagttattacactaactacttcttattctcat 438  Q
    ||||||||| ||||||||||||| ||||||||||  | |||||||| |||||||||||    
T  23369788 aactaaagctagataacttgttacgcaagttattgtagtaactactccttattctcat 23369845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 286 - 358
Target Start/End: Original strand, 31887972 - 31888044
Alignment:
Q  286 aaacattactccataacacccatacaaatcaaagggtgctgtcaccagtcattataactgaaagctggagtta 358  Q
    ||||| ||||||||||||| |||| |||| ||||||||| | |||| |||||||||| | ||||||| |||||    
T  31887972 aaacactactccataacactcatataaataaaagggtgccgccaccggtcattataattaaaagctgaagtta 31888044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 3e-25; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 287 - 362
Target Start/End: Complemental strand, 35431456 - 35431381
Alignment:
Q  287 aacattactccataacacccatacaaatcaaagggtgctgtcaccagtcattataactgaaagctggagttagcct 362  Q
    |||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||| |||||||||    
T  35431456 aacattactccataacacccatacaaattaaagggtgccgccaccagtcattataactgaaagctgaagttagcct 35431381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 154 - 225
Target Start/End: Complemental strand, 35431588 - 35431517
Alignment:
Q  154 aagccaaaatgaaatattataaccaccaagagcaattcatctcgcacaagacgtgcaaagaaaatcgctcct 225  Q
    ||||||||||||||||| |||| |||||||||| |||||||||||||||| |||||||||| || |||||||    
T  35431588 aagccaaaatgaaatataataatcaccaagagctattcatctcgcacaaggcgtgcaaagataaacgctcct 35431517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 292 - 360
Target Start/End: Original strand, 28920307 - 28920375
Alignment:
Q  292 tactccataacacccatacaaatcaaagggtgctgtcaccagtcattataactgaaagctggagttagc 360  Q
    ||||||||||||||||||||||  ||||||||| | ||||||||||||||||||||||| | |||||||    
T  28920307 tactccataacacccatacaaagtaaagggtgccgccaccagtcattataactgaaagcggaagttagc 28920375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 292 - 362
Target Start/End: Complemental strand, 33560468 - 33560398
Alignment:
Q  292 tactccataacacccatacaaatcaaagggtgctgtcaccagtcattataactgaaagctggagttagcct 362  Q
    |||||| |||||||||||||||| ||||||||  | ||| ||||||||||||||||||||| |||||||||    
T  33560468 tactccctaacacccatacaaattaaagggtgtcgccacaagtcattataactgaaagctgaagttagcct 33560398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 225
Target Start/End: Original strand, 3250091 - 3250162
Alignment:
Q  154 aagccaaaatgaaatattataaccaccaagagcaattcatctcgcacaagacgtgcaaagaaaatcgctcct 225  Q
    |||| |||||||||||| |||  |||||||||| |||||||||||||||| |||||||||| || |||||||    
T  3250091 aagctaaaatgaaatataatattcaccaagagctattcatctcgcacaaggcgtgcaaagataaacgctcct 3250162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 287 - 362
Target Start/End: Original strand, 3250222 - 3250297
Alignment:
Q  287 aacattactccataacacccatacaaatcaaagggtgctgtcaccagtcattataactgaaagctggagttagcct 362  Q
    |||||||  ||| |||| |||||| ||| ||||||||| | ||||||||||||||||||||||||| | |||||||    
T  3250222 aacattaacccaaaacaaccataccaattaaagggtgccgccaccagtcattataactgaaagctgaatttagcct 3250297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 286 - 362
Target Start/End: Original strand, 30702406 - 30702482
Alignment:
Q  286 aaacattactccataacacccatacaaatcaaagggtgctgtcaccagtcattataactgaaagctggagttagcct 362  Q
    ||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||| | |||||||||    
T  30702406 aaacattactccataacacccatacaaattaaagggtgccgccaccagtcattataactgaaagcggaagttagcct 30702482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 151 - 226
Target Start/End: Complemental strand, 30288696 - 30288621
Alignment:
Q  151 aagaagccaaaatgaaatattataaccaccaagagcaattcatctcgcacaagacgtgcaaagaaaatcgctcctc 226  Q
    ||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  30288696 aagaagccaaaatgaaatactattaacaccaagagcaattcatctcgcacaagacgtgcaaagagaattgctcctc 30288621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 289 - 362
Target Start/End: Complemental strand, 30288556 - 30288483
Alignment:
Q  289 cattactccataacacccatacaaatcaaagggtgctgtcaccagtcattataactgaaagctggagttagcct 362  Q
    |||||||||||||||||||||||||| ||||||||| | |||| |||||||||||||||||||| |||||||||    
T  30288556 cattactccataacacccatacaaattaaagggtgccgccacccgtcattataactgaaagctgaagttagcct 30288483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 286 - 362
Target Start/End: Original strand, 18004478 - 18004554
Alignment:
Q  286 aaacattactccataacacccatacaaatcaaagggtgctgtcaccagtcattataactgaaagctggagttagcct 362  Q
    ||||||||||||||||||||||||||||| ||||||||| | |||| |||||||||| ||||||||| |||||||||    
T  18004478 aaacattactccataacacccatacaaattaaagggtgccgccaccggtcattataattgaaagctgaagttagcct 18004554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 18004359 - 18004420
Alignment:
Q  165 aaatattataaccaccaagagcaattcatctcgcacaagacgtgcaaagaaaatcgctcctc 226  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||    
T  18004359 aaatattataaccaccaagagcacttcatctcgcacaaggcgtgcaaagaaaaacgctcctc 18004420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 158 - 226
Target Start/End: Original strand, 30702275 - 30702343
Alignment:
Q  158 caaaatgaaatattataaccaccaagagcaattcatctcgcacaagacgtgcaaagaaaatcgctcctc 226  Q
    |||||||||||| ||||| |||||||| || ||||||||||||||| |||||||||| || ||||||||    
T  30702275 caaaatgaaataatataatcaccaagaacagttcatctcgcacaaggcgtgcaaagataaacgctcctc 30702343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 292 - 362
Target Start/End: Complemental strand, 6744468 - 6744398
Alignment:
Q  292 tactccataacacccatacaaatcaaagggtgctgtcaccagtcattataactgaaagctggagttagcct 362  Q
    |||||| |||||||||||||||| || |||||  | ||||||||||||||||||||||||| ||| |||||    
T  6744468 tactccctaacacccatacaaattaacgggtgtcgccaccagtcattataactgaaagctgaagtgagcct 6744398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 362
Target Start/End: Complemental strand, 6654730 - 6654660
Alignment:
Q  292 tactccataacacccatacaaatcaaagggtgctgtcaccagtcattataactgaaagctggagttagcct 362  Q
    |||||| |||||||||||||||| || || ||  | ||||||||||||||||||||||||| ||| |||||    
T  6654730 tactccctaacacccatacaaattaacggatgtcgccaccagtcattataactgaaagctgaagtgagcct 6654660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 362
Target Start/End: Complemental strand, 6735132 - 6735062
Alignment:
Q  292 tactccataacacccatacaaatcaaagggtgctgtcaccagtcattataactgaaagctggagttagcct 362  Q
    |||||| |||||||||||||||| || || ||  | ||||||||||||||||||||||||| ||| |||||    
T  6735132 tactccctaacacccatacaaattaacggatgtcgccaccagtcattataactgaaagctgaagtgagcct 6735062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 13420009 - 13420069
Alignment:
Q  154 aagccaaaatgaaatattataaccaccaagagcaattcatctcgcacaagacgtgcaaaga 214  Q
    ||||||||||  ||||| |||| |||||||||  |||||||||||||||| ||||||||||    
T  13420009 aagccaaaatagaatataataatcaccaagagttattcatctcgcacaaggcgtgcaaaga 13420069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 292 - 350
Target Start/End: Original strand, 23636717 - 23636775
Alignment:
Q  292 tactccataacacccatacaaatcaaagggtgctgtcaccagtcattataactgaaagc 350  Q
    |||||||||||||||||||| |  |||||||||   |||||||| ||||||||||||||    
T  23636717 tactccataacacccatacataataaagggtgcatccaccagtcgttataactgaaagc 23636775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 292 - 362
Target Start/End: Complemental strand, 51410986 - 51410916
Alignment:
Q  292 tactccataacacccatacaaatcaaagggtgctgtcaccagtcattataactgaaagctggagttagcct 362  Q
    ||||||||||||||||||||| | ||||||| | | ||||||||||||||||||||||||| |||||||||    
T  51410986 tactccataacacccatacaagttaaagggttccgccaccagtcattataactgaaagctgaagttagcct 51410916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 151 - 226
Target Start/End: Complemental strand, 28970712 - 28970637
Alignment:
Q  151 aagaagccaaaatgaaatattataaccaccaagagcaattcatctcgcacaagacgtgcaaagaaaatcgctcctc 226  Q
    |||||| ||||||||||||| |||| |||||||||| ||||||||||||||||  ||||||||| |||| ||||||    
T  28970712 aagaaggcaaaatgaaatataataatcaccaagagcgattcatctcgcacaaggtgtgcaaagagaatcactcctc 28970637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 288 - 362
Target Start/End: Original strand, 32590667 - 32590741
Alignment:
Q  288 acattactccataacacccatacaaatcaaagggtgctgtcaccagtcattataactgaaagctggagttagcct 362  Q
    ||||||| ||||||||||||||||||| |||||||||   |||| |||||||||||||||||| | |||||||||    
T  32590667 acattacaccataacacccatacaaattaaagggtgccaccaccggtcattataactgaaagcggaagttagcct 32590741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 132
Target Start/End: Complemental strand, 26216049 - 26215976
Alignment:
Q  60 ggtgtactatatt-acaatgagctgtagcttagagtattagaactcttctaactaattgataactaactaaagc 132  Q
    ||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||| |   |||||||||||||    
T  26216049 ggtgtactatatttacaatgagctgaagcatagagtattagaactcttctaactaactagaaactaactaaagc 26215976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 292 - 352
Target Start/End: Original strand, 3854164 - 3854224
Alignment:
Q  292 tactccataacacccatacaaatcaaagggtgctgtcaccagtcattataactgaaagctg 352  Q
    |||||| |||||||||||||||| ||||||||  | |||||||||||||||||||||||||    
T  3854164 tactccctaacacccatacaaattaaagggtgtcgccaccagtcattataactgaaagctg 3854224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 292 - 352
Target Start/End: Original strand, 43912955 - 43913015
Alignment:
Q  292 tactccataacacccatacaaatcaaagggtgctgtcaccagtcattataactgaaagctg 352  Q
    ||||||||||||||||||||| | ||||||||| | ||||||||| |||||||||||||||    
T  43912955 tactccataacacccatacaagttaaagggtgccgccaccagtcagtataactgaaagctg 43913015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 151 - 226
Target Start/End: Complemental strand, 51411126 - 51411052
Alignment:
Q  151 aagaagccaaaatgaaatattataaccaccaagagcaattcatctcgcacaagacgtgcaaagaaaatcgctcctc 226  Q
    |||||||||||||||||||  |||| |||||||||||||||||||||| ||||  ||||||||| |||| ||||||    
T  51411126 aagaagccaaaatgaaataa-ataatcaccaagagcaattcatctcgcgcaaggtgtgcaaagagaatcactcctc 51411052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 292 - 362
Target Start/End: Complemental strand, 4694062 - 4693992
Alignment:
Q  292 tactccataacacccatacaaatcaaagggtgctgtcaccagtcattataactgaaagctggagttagcct 362  Q
    ||||||||||||| ||||||| | ||||||||  | ||||| ||||||||||||||||||| |||||||||    
T  4694062 tactccataacacacatacaagttaaagggtgtcgccaccattcattataactgaaagctgaagttagcct 4693992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 292 - 352
Target Start/End: Complemental strand, 42914084 - 42914024
Alignment:
Q  292 tactccataacacccatacaaatcaaagggtgctgtcaccagtcattataactgaaagctg 352  Q
    |||||||||||| |||||||| | ||||||||| | |||||||||||||| ||||||||||    
T  42914084 tactccataacatccatacaagttaaagggtgccgccaccagtcattatagctgaaagctg 42914024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 298 - 350
Target Start/End: Complemental strand, 50818481 - 50818429
Alignment:
Q  298 ataacacccatacaaatcaaagggtgctgtcaccagtcattataactgaaagc 350  Q
    |||||||||||||||||||| |  ||| |||||||||||||||||||||||||    
T  50818481 ataacacccatacaaatcaacgcatgccgtcaccagtcattataactgaaagc 50818429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 292 - 358
Target Start/End: Original strand, 51987640 - 51987706
Alignment:
Q  292 tactccataacacccatacaaatcaaagggtgctgtcaccagtcattataactgaaagctggagtta 358  Q
    |||||| |||||||||||||||| ||||||||  | ||   |||||||||||||||||||| |||||    
T  51987640 tactccctaacacccatacaaattaaagggtgtcgccataggtcattataactgaaagctgaagtta 51987706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 438
Target Start/End: Complemental strand, 6528536 - 6528479
Alignment:
Q  381 aactaaagcaagataacttgttatgcaagttattacactaactacttcttattctcat 438  Q
    ||||||||| |||||||||| || ||||||||||   |||||||||||||||| ||||    
T  6528536 aactaaagctagataacttgctacgcaagttattgtgctaactacttcttattttcat 6528479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 43912823 - 43912891
Alignment:
Q  157 ccaaaatgaaatattataaccaccaagagcaattcatctcgcacaagacgtgcaaagaaaatcgctcctc 226  Q
    |||||||||||||  |||| || ||||| ||||||||||||||||||  ||||||||| |||| ||||||    
T  43912823 ccaaaatgaaataa-ataatcatcaagaacaattcatctcgcacaaggtgtgcaaagagaatcactcctc 43912891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 292 - 352
Target Start/End: Original strand, 35246202 - 35246262
Alignment:
Q  292 tactccataacacccatacaaatcaaagggtgctgtcaccagtcattataactgaaagctg 352  Q
    ||||||||||||| ||||||| | ||||||||| | |||||||||||||||||||||||||    
T  35246202 tactccataacactcatacaagttaaagggtgccgccaccagtcattataactgaaagctg 35246262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 139
Target Start/End: Original strand, 21198000 - 21198101
Alignment:
Q  37 tacaacttatatagaagctaagtggtgtactatattacaatgagctgtagcttagagtattagaactcttctaactaattgataactaactaaagcaaga 136  Q
    ||||||||||||||   ||||| |||| ||||||||||||||||   |||| |||||||||| ||||||| |||||||  || ||||||||||||| |||    
T  21198000 tacaacttatatagcctctaagaggtgcactatattacaatgagacatagcatagagtattaaaactcttgtaactaacaga-aactaactaaagctaga 21198098  T
Q  137 taa 139  Q
    |||    
T  21198099 taa 21198101  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 292 - 350
Target Start/End: Original strand, 24233704 - 24233762
Alignment:
Q  292 tactccataacacccatacaaatcaaagggtgctgtcaccagtcattataactgaaagc 350  Q
    ||||||||||||||||||||| | ||| ||||| | |||||||||||||||||||||||    
T  24233704 tactccataacacccatacaagttaaatggtgccgccaccagtcattataactgaaagc 24233762  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 292 - 362
Target Start/End: Complemental strand, 42366379 - 42366309
Alignment:
Q  292 tactccataacacccatacaaatcaaagggtgctgtcaccagtcattataactgaaagctggagttagcct 362  Q
    |||||| |||||||||||||||| ||||||||  | |||| |||||||||| ||||||||| |||||||||    
T  42366379 tactccctaacacccatacaaattaaagggtgtcgccaccggtcattataattgaaagctgaagttagcct 42366309  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 299 - 362
Target Start/End: Complemental strand, 22166574 - 22166511
Alignment:
Q  299 taacacccatacaaatcaaagggtgctgtcaccagtcattataactgaaagctggagttagcct 362  Q
    |||||||||||||||| ||||||||  | ||||||| ||||||||||||||||  |||||||||    
T  22166574 taacacccatacaaattaaagggtgtcgccaccagtaattataactgaaagctcaagttagcct 22166511  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 292 - 362
Target Start/End: Complemental strand, 6218734 - 6218664
Alignment:
Q  292 tactccataacacccatacaaatcaaagggtgctgtcaccagtcattataactgaaagctggagttagcct 362  Q
    |||||| ||||||| |||||||| || |||||    ||||||||||||||||||||||||| ||| |||||    
T  6218734 tactccctaacacctatacaaattaacgggtgtcaccaccagtcattataactgaaagctgaagtgagcct 6218664  T

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Target: scaffold0152 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 139
Target Start/End: Original strand, 1756 - 1857
Alignment:
Q  37 tacaacttatatagaagctaagtggtgtactatattacaatgagctgtagcttagagtattagaactcttctaactaattgataactaactaaagcaaga 136  Q
    ||||||||||||||   ||||| |||| ||||||||||||||||   |||| |||||||||| ||||||| |||||||  || ||||||||||||| |||    
T  1756 tacaacttatatagcctctaagaggtgcactatattacaatgagacatagcatagagtattaaaactcttgtaactaacaga-aactaactaaagctaga 1854  T
Q  137 taa 139  Q
    |||    
T  1855 taa 1857  T

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Target: scaffold0152; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 139
Target Start/End: Original strand, 6003 - 6104
Alignment:
Q  37 tacaacttatatagaagctaagtggtgtactatattacaatgagctgtagcttagagtattagaactcttctaactaattgataactaactaaagcaaga 136  Q
    ||||||||||||||   ||||| |||| ||||||||||||||||   |||| |||||||||| ||||||| |||||||  || ||||||||||||| |||    
T  6003 tacaacttatatagcctctaagaggtgcactatattacaatgagacatagcatagagtattaaaactcttgtaactaacaga-aactaactaaagctaga 6101  T
Q  137 taa 139  Q
    |||    
T  6102 taa 6104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 37 - 139
Target Start/End: Original strand, 15928 - 16029
Alignment:
Q  37 tacaacttatatagaagctaagtggtgtactatattacaatgagctgtagcttagagtattagaactcttctaactaattgataactaactaaagcaaga 136  Q
    ||||||||||||||   ||||| |||| ||||||||||||||||   || | ||| |||||| ||||||| |||||||  || ||||||||||||| |||    
T  15928 tacaacttatatagcctctaagaggtgcactatattacaatgagacatatcatagggtattaaaactcttgtaactaacaga-aactaactaaagctaga 16026  T
Q  137 taa 139  Q
    |||    
T  16027 taa 16029  T

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Target: scaffold0152; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 438
Target Start/End: Original strand, 16014 - 16071
Alignment:
Q  381 aactaaagcaagataacttgttatgcaagttattacactaactacttcttattctcat 438  Q
    ||||||||| |||||||||| || ||||||||||   |||||||||||||||| ||||    
T  16014 aactaaagctagataacttgctacgcaagttattgtgctaactacttcttattttcat 16071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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