View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13119_low_70 (Length: 217)

Name: NF13119_low_70
Description: NF13119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13119_low_70
NF13119_low_70
[»] chr8 (9 HSPs)
chr8 (20-204)||(10683340-10683524)
chr8 (46-154)||(44912966-44913074)
chr8 (46-184)||(43811260-43811398)
chr8 (46-184)||(201461-201599)
chr8 (46-184)||(316298-316436)
chr8 (46-184)||(30409580-30409718)
chr8 (97-184)||(28647153-28647240)
chr8 (46-184)||(1287569-1287707)
chr8 (97-184)||(41946058-41946145)
[»] chr3 (6 HSPs)
chr3 (46-184)||(43548457-43548595)
chr3 (46-164)||(22931084-22931202)
chr3 (46-184)||(54171121-54171259)
chr3 (97-184)||(21847870-21847957)
chr3 (46-184)||(756564-756702)
chr3 (46-184)||(9698323-9698461)
[»] chr5 (9 HSPs)
chr5 (46-184)||(12019531-12019669)
chr5 (46-184)||(37659469-37659607)
chr5 (97-184)||(10275279-10275366)
chr5 (46-184)||(7103151-7103289)
chr5 (46-184)||(16794911-16795049)
chr5 (46-149)||(40371024-40371127)
chr5 (21-170)||(16598126-16598275)
chr5 (79-182)||(30048062-30048165)
chr5 (46-184)||(30696038-30696176)
[»] scaffold0044 (1 HSPs)
scaffold0044 (46-184)||(48642-48780)
[»] chr7 (3 HSPs)
chr7 (46-184)||(7943860-7943998)
chr7 (46-181)||(730353-730488)
chr7 (46-184)||(27757639-27757777)
[»] chr6 (4 HSPs)
chr6 (46-184)||(8319281-8319419)
chr6 (92-184)||(17160335-17160427)
chr6 (46-184)||(17881256-17881394)
chr6 (100-184)||(27571563-27571647)
[»] chr4 (5 HSPs)
chr4 (46-184)||(44147800-44147938)
chr4 (99-184)||(31355421-31355506)
chr4 (49-182)||(20290246-20290379)
chr4 (97-184)||(43683007-43683094)
chr4 (46-184)||(27186881-27187019)
[»] chr2 (4 HSPs)
chr2 (46-184)||(8051634-8051772)
chr2 (46-184)||(36671293-36671431)
chr2 (99-184)||(13270358-13270443)
chr2 (97-166)||(35953920-35953989)
[»] chr1 (2 HSPs)
chr1 (46-184)||(39794637-39794775)
chr1 (46-184)||(26312255-26312393)
[»] scaffold0027 (1 HSPs)
scaffold0027 (79-178)||(54226-54325)
[»] scaffold0009 (1 HSPs)
scaffold0009 (71-184)||(64579-64692)


Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 20 - 204
Target Start/End: Original strand, 10683340 - 10683524
Alignment:
Q  20 aatctgaaattgtttaactgcatgtgttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcag 119  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  10683340 aatctgaaattgtttaactgcatgtcttcatctgattgaaaatattaatcagtttggatatgtaatcaacaatttttttatcatcttccatctgcatcag 10683439  T
Q  120 ttcaaatttccttcttagagactgaagcttgatctgctttaccttttcatcacattcatgatactcttctagtatatcctatgct 204  Q
    || |||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||| |||||    
T  10683440 tttaaatttccttcttagagactgaagcttgatctgcttcaccttttcatcaccttcacgatactcttctagtatatcccatgct 10683524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 46 - 154
Target Start/End: Original strand, 44912966 - 44913074
Alignment:
Q  46 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 145  Q
    ||||||||||| | || |||| |||||||||| |||||||||||||| ||||| ||||||||||| ||||||| |||||| || ||||||| ||||||||    
T  44912966 ttcatctgatttacaacattattcagtttggagatgtaatcaacaatcttttgctcatcttccatttgcatcatttcaaactttcttcttaaagactgaa 44913065  T
Q  146 gcttgatct 154  Q
    |||| ||||    
T  44913066 gctttatct 44913074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 46 - 184
Target Start/End: Original strand, 43811260 - 43811398
Alignment:
Q  46 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 145  Q
    ||||||||||| | || |||||| ||||| || ||||| |||  ||| || |||||||||||||| ||||||| ||||||||||||||| ||||| ||||    
T  43811260 ttcatctgattcacaagattaatgagtttagagatgtattcagaaatcttctgatcatcttccatttgcatcaattcaaatttccttctcagagattgaa 43811359  T
Q  146 gcttgatctgctttaccttttcatcacattcatgatact 184  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  43811360 gcttaatcaacttcactttatcatcaccttcatgatact 43811398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 46 - 184
Target Start/End: Original strand, 201461 - 201599
Alignment:
Q  46 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 145  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||||||| |||||||||||||| ||||| ||||    
T  201461 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattgaa 201560  T
Q  146 gcttgatctgctttaccttttcatcacattcatgatact 184  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  201561 gcttaatcaacttcactttatcatcaccttcatgatact 201599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 46 - 184
Target Start/End: Original strand, 316298 - 316436
Alignment:
Q  46 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 145  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||||||| |||||||||||||| ||||| ||||    
T  316298 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattgaa 316397  T
Q  146 gcttgatctgctttaccttttcatcacattcatgatact 184  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  316398 gcttaatcaacttcactttatcatcaccttcatgatact 316436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 46 - 184
Target Start/End: Original strand, 30409580 - 30409718
Alignment:
Q  46 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 145  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||||||| |||||||||||||| ||||| ||||    
T  30409580 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattgaa 30409679  T
Q  146 gcttgatctgctttaccttttcatcacattcatgatact 184  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  30409680 gcttaatcaacttcactttatcatcaccttcatgatact 30409718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 97 - 184
Target Start/End: Complemental strand, 28647240 - 28647153
Alignment:
Q  97 tgatcatcttccatctgcatcagttcaaatttccttcttagagactgaagcttgatctgctttaccttttcatcacattcatgatact 184  Q
    |||||||||||||| ||||||||||||||||||||||||||  | |||||||| |||   || || || ||||||| |||||||||||    
T  28647240 tgatcatcttccatttgcatcagttcaaatttccttcttagttattgaagcttaatcaatttcactttatcatcaccttcatgatact 28647153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 184
Target Start/End: Complemental strand, 1287707 - 1287569
Alignment:
Q  46 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 145  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||||| |||||| ||||||||| |||| || || ||||    
T  1287707 ttcatctgattcacaagattgatgagtttagagatgtattcagaaatcttctgatcatcttccatctacatcagctcaaatttctttctcagtgattgaa 1287608  T
Q  146 gcttgatctgctttaccttttcatcacattcatgatact 184  Q
    |||| |||   || ||||| ||||||| |||||||||||    
T  1287607 gcttaatcgatttcaccttatcatcaccttcatgatact 1287569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 184
Target Start/End: Complemental strand, 41946145 - 41946058
Alignment:
Q  97 tgatcatcttccatctgcatcagttcaaatttccttcttagagactgaagcttgatctgctttaccttttcatcacattcatgatact 184  Q
    |||||||||||||||| |||||| ||||||||||| | ||| || |||||||| |||  ||| || || ||||||| |||||||||||    
T  41946145 tgatcatcttccatctacatcagctcaaatttcctccgtagtgattgaagcttaatcaacttcactttatcatcaccttcatgatact 41946058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 9e-23; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 46 - 184
Target Start/End: Complemental strand, 43548595 - 43548457
Alignment:
Q  46 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 145  Q
    ||||||||||| | || ||| || ||||| |||||||| |||  ||| |||||||||||||||||||||||||| ||||||||||||||||| || ||||    
T  43548595 ttcatctgattcacaagattgatgagtttagatatgtattcagaaatcttttgatcatcttccatctgcatcagctcaaatttccttcttagtgattgaa 43548496  T
Q  146 gcttgatctgctttaccttttcatcacattcatgatact 184  Q
    |||| |||   || || || ||||||| |||||||||||    
T  43548495 gcttaatcaatttcactttatcatcaccttcatgatact 43548457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 46 - 164
Target Start/End: Original strand, 22931084 - 22931202
Alignment:
Q  46 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 145  Q
    ||||||||||| | || |||||||||  |||| |||||||||||||| ||||  ||||||||||| |||||||  ||||||||||||||||   ||||||    
T  22931084 ttcatctgatttacaacattaatcagcatggagatgtaatcaacaatctttttctcatcttccatttgcatcaactcaaatttccttcttaataactgaa 22931183  T
Q  146 gcttgatctgctttacctt 164  Q
    |||| |||||||| |||||    
T  22931184 gctttatctgcttcacctt 22931202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 46 - 184
Target Start/End: Original strand, 54171121 - 54171259
Alignment:
Q  46 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 145  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| ||||||||||||||||| |||||||| |||||||||||||| ||||| ||||    
T  54171121 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttttgatcatcttccatttgcatcagctcaaatttccttctcagagattgaa 54171220  T
Q  146 gcttgatctgctttaccttttcatcacattcatgatact 184  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  54171221 gcttaatcaacttcactttatcatcaccttcatgatact 54171259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 97 - 184
Target Start/End: Complemental strand, 21847957 - 21847870
Alignment:
Q  97 tgatcatcttccatctgcatcagttcaaatttccttcttagagactgaagcttgatctgctttaccttttcatcacattcatgatact 184  Q
    |||||||||||||| |||||||| |||||||||||||| ||||| |||||||| |||  ||| || || ||||||| |||||||||||    
T  21847957 tgatcatcttccatttgcatcagctcaaatttccttctcagagattgaagcttaatcaacttcactttatcatcaccttcatgatact 21847870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 184
Target Start/End: Complemental strand, 756702 - 756564
Alignment:
Q  46 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 145  Q
    ||||||||||| | || ||| || |||||||| ||||| |||  ||| || |||||| |||||||||||||||| |||||||| || || || || ||||    
T  756702 ttcatctgattcacaagattgatgagtttggagatgtattcagaaatcttgtgatcaacttccatctgcatcagctcaaatttactcctcagtgattgaa 756603  T
Q  146 gcttgatctgctttaccttttcatcacattcatgatact 184  Q
    |||| |||   || || || ||||||| |||||||||||    
T  756602 gcttaatcaatttcactttatcatcaccttcatgatact 756564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 184
Target Start/End: Complemental strand, 9698461 - 9698323
Alignment:
Q  46 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 145  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||| ||| |||||||||||||| || || ||||    
T  9698461 ttcatctgattcacaagattgatgagtttagagatgtattcagaaatcttctgatcatcttccatttgcaccagctcaaatttccttctcagtgattgaa 9698362  T
Q  146 gcttgatctgctttaccttttcatcacattcatgatact 184  Q
    |||| |||  ||| || || ||| ||| |||||||||||    
T  9698361 gcttaatcaacttcactttatcaccaccttcatgatact 9698323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 46 - 184
Target Start/End: Complemental strand, 12019669 - 12019531
Alignment:
Q  46 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 145  Q
    ||||||||||| | || |||||| ||||| || ||||| |||  ||| || |||||||||||||| ||||||| ||||||||||||||| ||||| ||||    
T  12019669 ttcatctgattcacaagattaatgagtttagagatgtattcagaaatcttctgatcatcttccatttgcatcaattcaaatttccttctcagagattgaa 12019570  T
Q  146 gcttgatctgctttaccttttcatcacattcatgatact 184  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  12019569 gcttaatcaacttcactttatcatcaccttcatgatact 12019531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 46 - 184
Target Start/End: Complemental strand, 37659607 - 37659469
Alignment:
Q  46 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 145  Q
    ||||||||||| | || |||||| ||||| || ||||| |||  ||| || |||||||||||||| ||||||| ||||||||||||||| ||||| ||||    
T  37659607 ttcatctgattcacaagattaatgagtttagagatgtattcagaaatcttctgatcatcttccatttgcatcaattcaaatttccttctcagagattgaa 37659508  T
Q  146 gcttgatctgctttaccttttcatcacattcatgatact 184  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  37659507 gcttaatcaacttcactttatcatcaccttcatgatact 37659469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 97 - 184
Target Start/End: Complemental strand, 10275366 - 10275279
Alignment:
Q  97 tgatcatcttccatctgcatcagttcaaatttccttcttagagactgaagcttgatctgctttaccttttcatcacattcatgatact 184  Q
    ||||||||||||||||||||||| ||||||||||||||||| || |||||||| |||  ||| || || ||||||| |||||||||||    
T  10275366 tgatcatcttccatctgcatcagctcaaatttccttcttagtgattgaagcttaatcaacttcactttatcatcaccttcatgatact 10275279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 46 - 184
Target Start/End: Original strand, 7103151 - 7103289
Alignment:
Q  46 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 145  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||||||| |||||||||||||| ||||| ||||    
T  7103151 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattgaa 7103250  T
Q  146 gcttgatctgctttaccttttcatcacattcatgatact 184  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  7103251 gcttaatcaacttcactttatcatcaccttcatgatact 7103289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 46 - 184
Target Start/End: Complemental strand, 16795049 - 16794911
Alignment:
Q  46 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 145  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||||||| |||||||||||||| ||||| ||||    
T  16795049 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattgaa 16794950  T
Q  146 gcttgatctgctttaccttttcatcacattcatgatact 184  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  16794949 gcttaatcaacttcactttatcatcaccttcatgatact 16794911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 46 - 149
Target Start/End: Original strand, 40371024 - 40371127
Alignment:
Q  46 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 145  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| ||||||||||||||||||||||| || |||||||    
T  40371024 ttcatctgattcacaagattgatgagtttagagatgtattcagaaatcttctgatcatcttccatttgcatcagttcaaatttccttctcagtgactgaa 40371123  T
Q  146 gctt 149  Q
    ||||    
T  40371124 gctt 40371127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 170
Target Start/End: Original strand, 16598126 - 16598275
Alignment:
Q  21 atctgaaattgtttaactgcatgtgttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagt 120  Q
    ||||||||| |||| ||| ||||  |||||| ||||   || ||||||||  || || |||||||||||||| || || ||||||||||| |||| |  |    
T  16598126 atctgaaatagtttcactccatgccttcatccgattttcaacattaatcatcttagagatgtaatcaacaatcttctgctcatcttccatttgcaactat 16598225  T
Q  121 tcaaatttccttcttagagactgaagcttgatctgctttaccttttcatc 170  Q
    ||||||||||||| || ||| |||||||| |||| ||| |||||||||||    
T  16598226 tcaaatttccttcataaagagtgaagctttatctacttcaccttttcatc 16598275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 79 - 182
Target Start/End: Complemental strand, 30048165 - 30048062
Alignment:
Q  79 atgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaagcttgatctgctttaccttttcatcacattcat 178  Q
    |||||||||| ||| ||||| || |||||||| |||||||  | |||||||||||||| |||| ||||||| |||| ||| ||||| ||||| | |||||    
T  30048165 atgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaagaccgaagctttatctccttcaccttctcatctccttcat 30048066  T
Q  179 gata 182  Q
    ||||    
T  30048065 gata 30048062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 184
Target Start/End: Complemental strand, 30696176 - 30696038
Alignment:
Q  46 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 145  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||||||| |||||||||||||| || || ||||    
T  30696176 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagtgattgaa 30696077  T
Q  146 gcttgatctgctttaccttttcatcacattcatgatact 184  Q
    |||| |||  ||| || || ||||||| |||||| ||||    
T  30696076 gcttaatcaacttcactttatcatcaccttcatggtact 30696038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 46 - 184
Target Start/End: Original strand, 48642 - 48780
Alignment:
Q  46 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 145  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||||||| |||||||||||||| ||||| ||||    
T  48642 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattgaa 48741  T
Q  146 gcttgatctgctttaccttttcatcacattcatgatact 184  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  48742 gcttaatcaacttcactttatcatcaccttcatgatact 48780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 46 - 184
Target Start/End: Original strand, 7943860 - 7943998
Alignment:
Q  46 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 145  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||||||| |||||||||||||| ||||| ||||    
T  7943860 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattgaa 7943959  T
Q  146 gcttgatctgctttaccttttcatcacattcatgatact 184  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  7943960 gcttaatcaacttcactttatcatcaccttcatgatact 7943998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 46 - 181
Target Start/End: Complemental strand, 730488 - 730353
Alignment:
Q  46 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 145  Q
    ||||||||||| | |||||| || |||||||| || || ||| |||| ||||| || || ||||||||||||| |||||| |||||||| | ||||||||    
T  730488 ttcatctgattcacaatattgatgagtttggagatatattcagcaatattttgctcttcctccatctgcatcaattcaaacttccttctcaaagactgaa 730389  T
Q  146 gcttgatctgctttaccttttcatcacattcatgat 181  Q
    |||| |||  ||| ||||| ||||| | ||||||||    
T  730388 gcttaatcaacttcaccttatcatcgccttcatgat 730353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 184
Target Start/End: Complemental strand, 27757777 - 27757639
Alignment:
Q  46 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 145  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||||||| |||||||||||||| ||||| ||||    
T  27757777 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattgaa 27757678  T
Q  146 gcttgatctgctttaccttttcatcacattcatgatact 184  Q
    | || |||  ||| || || ||||||| |||||||||||    
T  27757677 gtttaatcaacttcactttatcatcaccttcatgatact 27757639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 5e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 46 - 184
Target Start/End: Original strand, 8319281 - 8319419
Alignment:
Q  46 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 145  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||||||| |||||||||||||| ||||| ||||    
T  8319281 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattgaa 8319380  T
Q  146 gcttgatctgctttaccttttcatcacattcatgatact 184  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  8319381 gcttaatcaacttcactttatcatcaccttcatgatact 8319419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 184
Target Start/End: Complemental strand, 17160427 - 17160335
Alignment:
Q  92 ttttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaagcttgatctgctttaccttttcatcacattcatgatact 184  Q
    |||||| ||||||||||||||||||||| ||||||||||| || || || |||||||| |||  ||| || || ||||||| |||||| ||||    
T  17160427 tttttttatcatcttccatctgcatcagctcaaatttcctcctcagtgattgaagcttaatcaacttcactttatcatcaccttcatggtact 17160335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 184
Target Start/End: Original strand, 17881256 - 17881394
Alignment:
Q  46 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 145  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| ||||  || |||||||||||||| || || ||||    
T  17881256 ttcatctgattcacaagattgatgagtttagagatgtattcataaatcttatgatcatcttccatttgcaatagctcaaatttccttctcagtgattgaa 17881355  T
Q  146 gcttgatctgctttaccttttcatcacattcatgatact 184  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  17881356 gcttaatcaacttcactttatcatcaccttcatgatact 17881394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 184
Target Start/End: Original strand, 27571563 - 27571647
Alignment:
Q  100 tcatcttccatctgcatcagttcaaatttccttcttagagactgaagcttgatctgctttaccttttcatcacattcatgatact 184  Q
    ||||||||||| |||||||||||||| |||||||| || || |||||||| |||   || || || ||||||| |||||||||||    
T  27571563 tcatcttccatttgcatcagttcaaacttccttctcagtgattgaagcttaatcaatttcactttatcatcaccttcatgatact 27571647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 46 - 184
Target Start/End: Complemental strand, 44147938 - 44147800
Alignment:
Q  46 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 145  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||||||| |||||||||||||| ||||| ||||    
T  44147938 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattgaa 44147839  T
Q  146 gcttgatctgctttaccttttcatcacattcatgatact 184  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  44147838 gcttaatcaacttcactttatcatcaccttcatgatact 44147800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 31355506 - 31355421
Alignment:
Q  99 atcatcttccatctgcatcagttcaaatttccttcttagagactgaagcttgatctgctttaccttttcatcacattcatgatact 184  Q
    ||||||||||||||||||||| |||||||||||||| || |||||||| || |||  ||| || || ||||||| |||||||||||    
T  31355506 atcatcttccatctgcatcagctcaaatttccttctcagtgactgaagtttaatcatcttcactttatcatcaccttcatgatact 31355421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 182
Target Start/End: Complemental strand, 20290379 - 20290246
Alignment:
Q  49 atctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaagct 148  Q
    |||||||| | || ||| || |||||||| ||||||||| |||| || |  ||||| ||||| ||||||| || ||| |||||||| |  ||||||||||    
T  20290379 atctgatttacaacattgattagtttggagatgtaatcagcaatcttcttctcatcctccatttgcatcaatttaaacttccttctcaatgactgaagct 20290280  T
Q  149 tgatctgctttaccttttcatcacattcatgata 182  Q
    | |||||||  ||||| ||||||| |||||||||    
T  20290279 ttatctgctccaccttatcatcaccttcatgata 20290246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 184
Target Start/End: Original strand, 43683007 - 43683094
Alignment:
Q  97 tgatcatcttccatctgcatcagttcaaatttccttcttagagactgaagcttgatctgctttaccttttcatcacattcatgatact 184  Q
    |||||||||||||| || |||||||||||||||||||| || || ||||| || |||  ||| || || ||||||| |||||||||||    
T  43683007 tgatcatcttccatttgtatcagttcaaatttccttctcagtgattgaagtttaatcaacttcactttatcatcaccttcatgatact 43683094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 184
Target Start/End: Complemental strand, 27187019 - 27186881
Alignment:
Q  46 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 145  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||| ||| |||||||||||||| || || ||||    
T  27187019 ttcatctgattcacaagattgatgagtttagagatgtattcagaaatcttctgatcatcttccatttgcaccagctcaaatttccttctcagtgattgaa 27186920  T
Q  146 gcttgatctgctttaccttttcatcacattcatgatact 184  Q
    |||| |||  ||| || || ||| ||| |||||||||||    
T  27186919 gcttaatcaacttcactttatcaccaccttcatgatact 27186881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 46 - 184
Target Start/End: Complemental strand, 8051772 - 8051634
Alignment:
Q  46 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 145  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||||||| |||||||||||||| ||||| ||||    
T  8051772 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattgaa 8051673  T
Q  146 gcttgatctgctttaccttttcatcacattcatgatact 184  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  8051672 gcttaatcaacttcactttatcatcaccttcatgatact 8051634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 46 - 184
Target Start/End: Complemental strand, 36671431 - 36671293
Alignment:
Q  46 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 145  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||||||| |||||||||||||| ||||| ||||    
T  36671431 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattgaa 36671332  T
Q  146 gcttgatctgctttaccttttcatcacattcatgatact 184  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  36671331 gcttaatcaacttcactttatcatcaccttcatgatact 36671293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 184
Target Start/End: Original strand, 13270358 - 13270443
Alignment:
Q  99 atcatcttccatctgcatcagttcaaatttccttcttagagactgaagcttgatctgctttaccttttcatcacattcatgatact 184  Q
    |||||||||||| |||||||| |||||||||||||| || || |||||||| |||  ||| || || ||||||| |||||||||||    
T  13270358 atcatcttccatttgcatcagctcaaatttccttctcagtgattgaagcttaatcaacttcactttatcatcaccttcatgatact 13270443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 166
Target Start/End: Original strand, 35953920 - 35953989
Alignment:
Q  97 tgatcatcttccatctgcatcagttcaaatttccttcttagagactgaagcttgatctgctttacctttt 166  Q
    |||||||||||||| |||||||| |||||||||||||| || || |||||||| |||  |||||| ||||    
T  35953920 tgatcatcttccatttgcatcagctcaaatttccttctcagtgattgaagcttaatcaactttacttttt 35953989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 46 - 184
Target Start/End: Complemental strand, 39794775 - 39794637
Alignment:
Q  46 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 145  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||||||| |||||||||||||| ||||| ||||    
T  39794775 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattgaa 39794676  T
Q  146 gcttgatctgctttaccttttcatcacattcatgatact 184  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  39794675 gcttaatcaacttcactttatcatcaccttcatgatact 39794637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 184
Target Start/End: Complemental strand, 26312393 - 26312255
Alignment:
Q  46 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 145  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||||||| |||||||||||||| ||||| || |    
T  26312393 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattgga 26312294  T
Q  146 gcttgatctgctttaccttttcatcacattcatgatact 184  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  26312293 gcttaatcaacttcactttatcatcaccttcatgatact 26312255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 79 - 178
Target Start/End: Original strand, 54226 - 54325
Alignment:
Q  79 atgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaagcttgatctgctttaccttttcatcacattcat 178  Q
    |||||||||||||| || ||||  |||||||| |  ||||||| ||||||||| || | ||| ||||||||||||||||| ||||||||||||| |||||    
T  54226 atgtaatcaacaatcttatgatattcttccatttatatcagttgaaatttcctcctcaaagattgaagcttgatctgcttcaccttttcatcaccttcat 54325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 71 - 184
Target Start/End: Original strand, 64579 - 64692
Alignment:
Q  71 gtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaagcttgatctgctttaccttttcatc 170  Q
    ||||||| ||||| |||  ||| || ||||||||||||||||||||||| ||||||||||| || || || |||||||| |||   || ||||| |||||    
T  64579 gtttggagatgtattcagaaatcttctgatcatcttccatctgcatcagctcaaatttcctcctcagtgattgaagcttaatcaatttcaccttatcatc 64678  T
Q  171 acattcatgatact 184  Q
    || |||||||||||    
T  64679 accttcatgatact 64692  T

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