View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13119_low_8 (Length: 625)
Name: NF13119_low_8
Description: NF13119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13119_low_8 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 582; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 12 - 625
Target Start/End: Original strand, 40764368 - 40764981
Alignment:
| Q |
12 |
gattattctcatctatagctgtttgaagttttttgaaatacaatgttttctcacacctttctccctatcaaattagtcactattaaccacattatcagct |
111 |
Q |
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| T |
40764368 |
gattattctcatcgatagctgtttgaagttttttgaaatacaatgttttctcacacctttctccctatcaaattagtcactattaaccccattatcagct |
40764467 |
T |
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| Q |
112 |
gaatgccaattcaaatactttgttttttatggtaataaacttatttttctagtgcgtgcaatcttgaactgccaacttcactcctactcctatggttggt |
211 |
Q |
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| T |
40764468 |
gaatgccaattcaaatactttgttttttagggtaataaacttatttttttagtgcgtgcaatcttgaactgccaacttcactcctactcctatggttggt |
40764567 |
T |
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| Q |
212 |
gcttttgcttttgttgtggcagaaagaataacttattatctgcattattgtgtaggatgatatgaagtgcgccgaggcatatgtgaaatttttgtgtcag |
311 |
Q |
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| T |
40764568 |
gcttttgcttttgttgtggcagaaagaataacttattatctgcattattgtgtaggatgatatgaagtgcgccgaggcatatgtgaaatttttgtgtcag |
40764667 |
T |
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| Q |
312 |
tggttactcgacaactgccttgaggatatggaatttatggctgacaaaggttgcattgatcgtttgaaaatggttgcctccacccccttcattcgactta |
411 |
Q |
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| T |
40764668 |
tggttactcgacaactgccttgaggatatggaatttatggctgacaaaggttgcattgatcgtttgaaaatggttgcctccacccccttcattcgactta |
40764767 |
T |
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| Q |
412 |
catatacagaagctgtggaaatactggacgaagctgtgaagaatggtacggaatttgagaatgaagtaacatggggaattgatttagcttctgagcatga |
511 |
Q |
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| T |
40764768 |
catatacagaagctgtggaaatactggaagaagctgtgaagaatggtacggaatttgagaatgaagtaaaatggggaattgatttagcttctgagcatga |
40764867 |
T |
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| Q |
512 |
aaggtacttctacagttgttttttcaagttcttgttcttatcgtattgtgatttttctctattgataaatgttggttgttacttttgtgtgttgtattgt |
611 |
Q |
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| T |
40764868 |
aaggtacttctacagttgttttttcaagttcttgttcttatcgtatcgtgttttttctctattgataaatgttggttgttacttttgtgtgttgtattgt |
40764967 |
T |
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| Q |
612 |
gttttttcttcaat |
625 |
Q |
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| T |
40764968 |
gttttttcttcaat |
40764981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 55 - 600
Target Start/End: Original strand, 42912038 - 42912579
Alignment:
| Q |
55 |
tgttttctcacacctttctccctatcaaattagtcactattaaccacattatcagctgaatgccaattcaaatactttgttttttatggtaataaactta |
154 |
Q |
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| T |
42912038 |
tgttttctcacatctttaacgctatcaaattatttgttattaaccacattatcggctgagtgtcaattcaaatact--gttttttagggtaataaactta |
42912135 |
T |
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| Q |
155 |
tttttctagtgcgtgcaatcttgaactgccaacttcactcctactcctatggttggtgcttttgcttttgttgtggcagaaagaataacttattatctgc |
254 |
Q |
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| T |
42912136 |
tttttctagtgc----aatcttgaactgccaacttcacccctactcctatggttggtgcttttgcttttgctgtggcagaac-aataatttaatatttgc |
42912230 |
T |
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| Q |
255 |
attattgtgtaggatgatatgaagtgcgccgaggcatatgtgaaatttttgtgtcagtggttactcgacaactgccttgaggatatggaatttatggc-- |
352 |
Q |
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| T |
42912231 |
attattgtgtaggatgatatgaagtgcgccgaggcatatgtgaaatttttgtgtcggtggttacttgacaactgccttgaggatatggaatttatggccg |
42912330 |
T |
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| Q |
353 |
-------tgacaaaggttgcattgatcgtttgaaaatggttgcctccacccccttcattcgacttacatatacagaagctgtggaaatactggacgaagc |
445 |
Q |
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||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||| ||| | |
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| T |
42912331 |
acaagtttgataaaggttgcattgatcgtttgaaaatggttgcctcaacccccttcattcgacttacatatacagaagccgtggaaatattggaagaatc |
42912430 |
T |
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| Q |
446 |
tgtgaagaatggtacggaatttgagaatgaagtaacatggggaattgatttagcttctgagcatgaaaggtacttctacagttgttttttcaagttcttg |
545 |
Q |
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| T |
42912431 |
tgtgcagaatggtaagaaatttgagaaggaagtagaatggggaatcgatctagcttcagagcatgaaaggtacttctgtagttattttttcaa---cttg |
42912527 |
T |
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| Q |
546 |
ttcttatcgtattgtgatttttctctattgataaatgttggttgttacttttgtg |
600 |
Q |
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| T |
42912528 |
ttctt---gagttttgttttttctttaatgataaatgttggttgttacttttgtg |
42912579 |
T |
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