View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1311_high_13 (Length: 253)

Name: NF1311_high_13
Description: NF1311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1311_high_13
NF1311_high_13
[»] scaffold0595 (1 HSPs)
scaffold0595 (23-253)||(1204-1433)
[»] chr6 (1 HSPs)
chr6 (23-253)||(8328599-8328828)


Alignment Details
Target: scaffold0595 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0595
Description:

Target: scaffold0595; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 23 - 253
Target Start/End: Original strand, 1204 - 1433
Alignment:
Q  23 atcatcagatctataactataaatatagggccattgcaccaggtacaatcacttcacttatttcacatatgctcactaatcaacctannnnnnnnnacat 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||    
T  1204 atcatcagatctataactataaatatagggccattgcaccaggtacaatcacttcacttatttcacatatgctcactaatcaacctattttattt-acat 1302  T
Q  123 gtttgcactcaacctcactttggcggttagagtgtcttttgcaggcacacctccctctttggaggagtgtatgactagtcgcaaaagatccaaccagaac 222  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1303 gtttgcactcagcctcactttggcggttagagtgttttttgcaggcacacctccctctttggaggagtgtatgactagtcgcaaaagatccaaccagaac 1402  T
Q  223 caccgaagaatgaatcacatgaggtacaccc 253  Q
    || ||||||||||||||||||||||||||||    
T  1403 catcgaagaatgaatcacatgaggtacaccc 1433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 23 - 253
Target Start/End: Complemental strand, 8328828 - 8328599
Alignment:
Q  23 atcatcagatctataactataaatatagggccattgcaccaggtacaatcacttcacttatttcacatatgctcactaatcaacctannnnnnnnnacat 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||    
T  8328828 atcatcagatctataactataaatatagggccattgcaccaggtacaatcacttcacttatttcacatatgctcactaatcaacctattttattt-acat 8328730  T
Q  123 gtttgcactcaacctcactttggcggttagagtgtcttttgcaggcacacctccctctttggaggagtgtatgactagtcgcaaaagatccaaccagaac 222  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8328729 gtttgcactcagcctcactttggcggttagagtgttttttgcaggcacacctccctctttggaggagtgtatgactagtcgcaaaagatccaaccagaac 8328630  T
Q  223 caccgaagaatgaatcacatgaggtacaccc 253  Q
    || ||||||||||||||||||||||||||||    
T  8328629 catcgaagaatgaatcacatgaggtacaccc 8328599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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