View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13120_high_1 (Length: 382)
Name: NF13120_high_1
Description: NF13120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13120_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 378
Target Start/End: Original strand, 11342489 - 11342862
Alignment:
| Q |
18 |
tattatggctcatatttgtcaatgtctgagtcgattgttaactttccggcgagattttccggtcaccattgccggaaacaaccgcaagacagggcaagag |
117 |
Q |
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| T |
11342489 |
tattatggctcatatttgtcaatgtctgagtcgattgttaactttccggcgagattttccggtcaccattgccggaaacaaccgcaagacagggcaagag |
11342588 |
T |
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| Q |
118 |
ttggtggaggaagtggtgtcactagctcatggtcttctccagctgggtgtcacaccaggtgatgttgtagccatctctgcttacaacaggtact------ |
211 |
Q |
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| T |
11342589 |
ttggtggaggaagtggtgtcactagctcatggtcttctccagctgggtgtcacaccaggtgatgttgtagccatctctgcttacaacaggtacttatata |
11342688 |
T |
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| Q |
212 |
--tatatatcattattaaactatatatattcaactatagctgtttttattgactgtgattgagagagtc-----ttagatataatattatgtaaaaaatt |
304 |
Q |
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| T |
11342689 |
tatatatatcattattaaactatatatattcaactatagctgtttttattgactgtgattgagagagtcttatattagatattatattatgtaaaaaatt |
11342788 |
T |
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| Q |
305 |
attaatgtgaggaatagttcttgctagatcatactcaatgattttacaaatggtagatgaattttatttttcat |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11342789 |
attaatgtgaggaatagttcttgctagatcatactcaatgattttacaaatggtagatgaattttatttttcat |
11342862 |
T |
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