View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13120_high_2 (Length: 380)
Name: NF13120_high_2
Description: NF13120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13120_high_2 |
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| [»] scaffold0154 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 24 - 328
Target Start/End: Complemental strand, 13832398 - 13832090
Alignment:
| Q |
24 |
ttcatgagggagacatta----ctaatcgaaagttttgcacgtattggttagaggaatgggcacacccatcttctttggatccatagataaggaacactc |
119 |
Q |
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| T |
13832398 |
ttcatgagggagacattaattactaatcgaaagttttgcatgtattggttagaggaatgggcacacccatcttctttgtatccatatataaagaacactc |
13832299 |
T |
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| Q |
120 |
tatattcatgttgaacttgtgtgtcaccaatatccataaaacattagcctttgaattcactaccatgttcaatgtcaagggtattgattcacctaaaaca |
219 |
Q |
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| T |
13832298 |
tatattcatgttgaacttgtgtgtcaccaatatccataacacattagcctttgaattcactatcatgttcaatgtcaaaggtattgattcacctaaaaca |
13832199 |
T |
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| Q |
220 |
taatcatctggtactatatgcagtggaatttgacttccttcaaccatcacgtcaatagttctcgcactttttcttggttgataaaaattaggtatctgca |
319 |
Q |
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| T |
13832198 |
taatcatctggtgctatatgcactggaatttgacttccttcaaccttcacgtcaatagatctcgcactttttcttcgttgataaaaattaggtatctgca |
13832099 |
T |
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| Q |
320 |
aaaatataa |
328 |
Q |
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||||||||| |
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| T |
13832098 |
aaaatataa |
13832090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 371
Target Start/End: Complemental strand, 13832036 - 13831993
Alignment:
| Q |
327 |
aaagattgtgattttataaagattaaaaacatatttaagaataat |
371 |
Q |
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| T |
13832036 |
aaagatcgtgattttataaagatt-aaaacatatttaagcataat |
13831993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 332 - 364
Target Start/End: Original strand, 26242231 - 26242263
Alignment:
| Q |
332 |
ttgtgattttataaagattaaaaacatatttaa |
364 |
Q |
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| T |
26242231 |
ttgtgattttatagagattaaaaacatatttaa |
26242263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0154 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0154
Description:
Target: scaffold0154; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 328
Target Start/End: Complemental strand, 932 - 845
Alignment:
| Q |
241 |
agtggaatttgacttccttcaaccatcacgtcaatagttctcgcactttttcttggttgataaaaattaggtatctgcaaaaatataa |
328 |
Q |
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| T |
932 |
agtggaatatgacttcctttcaccatcactttaatagatctttgactttttcttgattgataaaacttaggcatctgcacaaatataa |
845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 332 - 364
Target Start/End: Complemental strand, 30465100 - 30465068
Alignment:
| Q |
332 |
ttgtgattttataaagattaaaaacatatttaa |
364 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
30465100 |
ttgtaattttataaagattaaaaacatatttaa |
30465068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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