View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13120_high_3 (Length: 361)

Name: NF13120_high_3
Description: NF13120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13120_high_3
NF13120_high_3
[»] chr5 (10 HSPs)
chr5 (27-361)||(13447062-13447396)
chr5 (27-349)||(13419511-13419833)
chr5 (27-294)||(13426402-13426669)
chr5 (29-306)||(13413168-13413445)
chr5 (155-275)||(13388988-13389108)
chr5 (154-275)||(13385167-13385288)
chr5 (155-275)||(13454143-13454263)
chr5 (27-101)||(13454015-13454089)
chr5 (29-108)||(13393562-13393641)
chr5 (193-267)||(13393403-13393477)
[»] chr4 (2 HSPs)
chr4 (47-121)||(47601353-47601427)
chr4 (224-264)||(47601530-47601570)


Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 27 - 361
Target Start/End: Original strand, 13447062 - 13447396
Alignment:
Q  27 catcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccaccacgagactt 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13447062 catcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagactt 13447161  T
Q  127 accattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctact 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13447162 accattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcgcaagaacgacatgaatcaaccatgtatcccacccctact 13447261  T
Q  227 ttgtctccaactttaaacttttttactttgcttcccacctctgttactacacccgtaagttcgtgcctatatttattacattagttataaccaaattgag 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  13447262 ttgtctccaactttaaacttttttactttgcttcccacctctgttactacacccgtaagttcgtgcctatatttattacattagttataacgaaattgag 13447361  T
Q  327 caattattttctactcgtttcttttgattgactca 361  Q
    |||||||||||||||||||||||||||||||||||    
T  13447362 caattattttctactcgtttcttttgattgactca 13447396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 27 - 349
Target Start/End: Original strand, 13419511 - 13419833
Alignment:
Q  27 catcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccaccacgagactt 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||  |||||| ||||| ||||    
T  13419511 catcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagtaacctccatatgtgacggtgccatcacgatactt 13419610  T
Q  127 accattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctact 226  Q
      ||    ||||    ||| || | | |||||||||||||| |||||| ||||||||||  || ||||||||||||||||||||||||||||| || |||    
T  13419611 tgcaccacatgtgactgtaaatgttgggcagtaattctcaagatcgtcagcacaattttggcatgaacgacatgaatcaaccatgtatcccacaccaact 13419710  T
Q  227 ttgtctccaactttaaacttttttactttgcttcccacctctgttactacacccgtaagttcgtgcctatatttattacattagttataaccaaattgag 326  Q
    |||||||||||||||||||||| |||||||||||| ||||| ||||||| ||||| |||||| |||||  |||||||| || | |||||| ||||||||     
T  13419711 ttgtctccaactttaaacttttctactttgcttccaacctcggttactatacccgcaagttcatgcctgcatttattaaataaattataaacaaattgaa 13419810  T
Q  327 caattattttctactcgtttctt 349  Q
    ||||||||| |||||| ||||||    
T  13419811 caattatttactactcatttctt 13419833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 27 - 294
Target Start/End: Original strand, 13426402 - 13426669
Alignment:
Q  27 catcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccaccacgagactt 126  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||| ||||   ||||| ||||| ||||    
T  13426402 catcaagaggtaagctatcaggaatgcgaatcacaaagtgctcatctgcaaccattgagtcggaataacctccatatgtgacgctgccatcacgatactt 13426501  T
Q  127 accattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctact 226  Q
    | ||    ||||    || | || || |||||||||||||| ||| || ||||||||||| || ||||||||||||||||||||||||||||| ||||||    
T  13426502 agcaccacatgtaactgtttgttgggggcagtaattctcaagatcttccgcacaattttcgcatgaacgacatgaatcaaccatgtatcccactcctact 13426601  T
Q  227 ttgtctccaactttaaacttttttactttgcttcccacctctgttactacacccgtaagttcgtgcct 294  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||| | ||||| |||||| |||||    
T  13426602 ttgtctccaactttaaacttttctactttgcttccaacctctgttacaatacccgcaagttcatgcct 13426669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 29 - 306
Target Start/End: Original strand, 13413168 - 13413445
Alignment:
Q  29 tcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccaccacgagacttac 128  Q
    |||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||  || ||| ||||| ||||      
T  13413168 tcaagaggtatgttgtcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagtaacctccataagtgacggttccatcacgatacttgg 13413267  T
Q  129 cattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctacttt 228  Q
    ||    ||||      | |||||| |||||||||||||| || |||   ||||| ||  || || ||||||||||||| || ||| || || ||||||||    
T  13413268 caccacatgtgactacaaatttggggcagtaattctcaagattgtcattacaatcttggcatgatcgacatgaatcaatcaagtagccaacacctacttt 13413367  T
Q  229 gtctccaactttaaacttttttactttgcttcccacctctgttactacacccgtaagttcgtgcctatatttattaca 306  Q
    |||||||||||||||||| |  ||||||||||| || |||||||||| ||||| ||| || ||||| |||||||||||    
T  13413368 gtctccaactttaaacttctccactttgcttcctacttctgttactatacccgcaagctcatgcctgtatttattaca 13413445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 155 - 275
Target Start/End: Complemental strand, 13389108 - 13388988
Alignment:
Q  155 cagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttttactt 254  Q
    |||||||| |||| || |||  ||||||||| ||| || |||||||||||||||||||| || || ||||||||||||||||| || ||||||| |||||    
T  13389108 cagtaattttcaagattgtcaacacaattttgacatgatcgacatgaatcaaccatgtagccaacacctactttgtctccaacattgaacttttctactt 13389009  T
Q  255 tgcttcccacctctgttacta 275  Q
    |||||||||||| ||| ||||    
T  13389008 tgcttcccacctttgtcacta 13388988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 275
Target Start/End: Complemental strand, 13385288 - 13385167
Alignment:
Q  154 gcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttttact 253  Q
    ||||||||| |||| || |||  ||||||||| ||| || |||||||||||||  ||||| || || ||||||||||||||||| || ||||||| ||||    
T  13385288 gcagtaattttcaagattgtcaacacaattttgacacgatcgacatgaatcaattatgtagccaacacctactttgtctccaacattgaacttttctact 13385189  T
Q  254 ttgcttcccacctctgttacta 275  Q
    ||||||||||||| ||| ||||    
T  13385188 ttgcttcccacctttgtcacta 13385167  T

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Target: chr5; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 155 - 275
Target Start/End: Original strand, 13454143 - 13454263
Alignment:
Q  155 cagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttttactt 254  Q
    ||||||||||||| ||  ||  ||||||||| ||| ||  |||| |||||||||| | ||||||| |||||| ||||||||||||| |||||||| ||||    
T  13454143 cagtaattctcaagattatcaacacaattttgacatgagtgacaagaatcaaccaagcatcccacacctactctgtctccaactttgaactttttcactt 13454242  T
Q  255 tgcttcccacctctgttacta 275  Q
    |||||||||| ||||| ||||    
T  13454243 tgcttcccacttctgtaacta 13454263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 13454015 - 13454089
Alignment:
Q  27 catcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccat 101  Q
    |||||||||||||   ||| |||||||||| ||||||||||||||| | |||||||||||| ||||| |||||||    
T  13454015 catcaagaggtaactgatctggaatgcgaaacacaaagtgctcgtcggaaaccattgagtcagagaagcctccat 13454089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 108
Target Start/End: Complemental strand, 13393641 - 13393562
Alignment:
Q  29 tcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgat 108  Q
    ||||| ||||||| |||||||||| |||  | ||||||||| ||||||||||||||||| ||| | |||||||| |||||    
T  13393641 tcaagtggtaagccatcaggaatgtgaactataaagtgctcatctgcaaccattgagtcagagtaccctccatatgtgat 13393562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 267
Target Start/End: Complemental strand, 13393477 - 13393403
Alignment:
Q  193 acgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttttactttgcttcccacctc 267  Q
    |||||| |||||||| | | ||||||| || ||||||||||||| ||| ||||| | |||||||||||| |||||    
T  13393477 acgacacgaatcaactaagcatcccacacccactttgtctccaattttgaacttctctactttgcttcctacctc 13393403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 121
Target Start/End: Original strand, 47601353 - 47601427
Alignment:
Q  47 ggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccaccacga 121  Q
    |||||| ||| |||||||||||||||| ||||||||||||| ||| ||||||| || ||| | |||||| |||||    
T  47601353 ggaatgtgaaccacaaagtgctcgtctacaaccattgagtcagagtaacctccgtatgtggtggtgccatcacga 47601427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 47601530 - 47601570
Alignment:
Q  224 actttgtctccaactttaaacttttttactttgcttcccac 264  Q
    ||||||||||||||||| ||||||| |||||||||||||||    
T  47601530 actttgtctccaactttgaacttttctactttgcttcccac 47601570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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