View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13121_high_1 (Length: 542)

Name: NF13121_high_1
Description: NF13121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13121_high_1
NF13121_high_1
[»] chr1 (12 HSPs)
chr1 (274-537)||(8933455-8933718)
chr1 (368-537)||(10911358-10911535)
chr1 (368-537)||(10909114-10909292)
chr1 (368-537)||(13011704-13011881)
chr1 (368-537)||(29833878-29834046)
chr1 (368-537)||(2403835-2404005)
chr1 (367-537)||(29833075-29833253)
chr1 (368-537)||(2409957-2410127)
chr1 (368-537)||(734579-734756)
chr1 (157-229)||(8933338-8933410)
chr1 (18-67)||(8933200-8933249)
chr1 (372-414)||(419174-419216)
[»] chr7 (21 HSPs)
chr7 (368-537)||(42678571-42678739)
chr7 (368-537)||(8731176-8731353)
chr7 (368-537)||(3932721-3932899)
chr7 (368-537)||(3934960-3935138)
chr7 (368-530)||(8414490-8414662)
chr7 (368-520)||(18395337-18395497)
chr7 (368-537)||(8733495-8733675)
chr7 (368-460)||(36464213-36464305)
chr7 (368-461)||(16496953-16497046)
chr7 (368-462)||(19789177-19789272)
chr7 (368-461)||(16535135-16535228)
chr7 (368-461)||(16630434-16630527)
chr7 (370-462)||(19786871-19786964)
chr7 (368-537)||(3052210-3052387)
chr7 (469-537)||(28610350-28610418)
chr7 (467-537)||(19786769-19786839)
chr7 (467-537)||(19789075-19789145)
chr7 (370-460)||(21769071-21769161)
chr7 (467-537)||(36464331-36464401)
chr7 (367-419)||(42680811-42680863)
chr7 (470-537)||(19093958-19094029)
[»] chr2 (11 HSPs)
chr2 (368-537)||(42277782-42277959)
chr2 (367-537)||(42275555-42275733)
chr2 (374-508)||(8995076-8995210)
chr2 (368-536)||(31486890-31487069)
chr2 (368-536)||(31489174-31489353)
chr2 (367-462)||(5164150-5164245)
chr2 (368-537)||(23860009-23860187)
chr2 (374-455)||(15730012-15730093)
chr2 (469-538)||(29801985-29802054)
chr2 (376-537)||(34576612-34576769)
chr2 (366-430)||(39816087-39816151)
[»] chr5 (11 HSPs)
chr5 (368-537)||(11849917-11850085)
chr5 (368-537)||(11852175-11852343)
chr5 (368-537)||(1779222-1779386)
chr5 (368-537)||(37215469-37215638)
chr5 (367-537)||(23164253-23164418)
chr5 (368-537)||(22600918-22601087)
chr5 (368-537)||(21743628-21743797)
chr5 (423-537)||(37207878-37207992)
chr5 (368-441)||(37207996-37208070)
chr5 (368-447)||(15469179-15469258)
chr5 (469-509)||(1779181-1779221)
[»] chr4 (11 HSPs)
chr4 (368-537)||(13774157-13774336)
chr4 (371-537)||(13776455-13776630)
chr4 (367-537)||(50855770-50855939)
chr4 (368-537)||(45162185-45162364)
chr4 (368-537)||(42468439-42468617)
chr4 (368-537)||(42470768-42470946)
chr4 (368-537)||(19429076-19429255)
chr4 (370-537)||(45167077-45167254)
chr4 (368-537)||(8739399-8739562)
chr4 (468-530)||(24908156-24908218)
chr4 (481-538)||(43179653-43179710)
[»] chr3 (3 HSPs)
chr3 (368-537)||(4530841-4531020)
chr3 (368-537)||(4533138-4533317)
chr3 (469-537)||(18966221-18966289)
[»] scaffold0599 (1 HSPs)
scaffold0599 (365-537)||(1622-1804)
[»] chr8 (7 HSPs)
chr8 (368-537)||(4876998-4877176)
chr8 (368-537)||(4879326-4879504)
chr8 (368-537)||(24519153-24519332)
chr8 (368-536)||(36379465-36379644)
chr8 (367-462)||(21268119-21268215)
chr8 (368-536)||(36377181-36377359)
chr8 (469-537)||(21268240-21268308)
[»] scaffold0050 (2 HSPs)
scaffold0050 (368-537)||(29345-29514)
scaffold0050 (368-537)||(31660-31829)
[»] scaffold1361 (1 HSPs)
scaffold1361 (368-498)||(1-140)
[»] scaffold0008 (1 HSPs)
scaffold0008 (368-461)||(88438-88531)
[»] scaffold0098 (1 HSPs)
scaffold0098 (367-446)||(3706-3785)
[»] chr6 (2 HSPs)
chr6 (370-510)||(20642220-20642359)
chr6 (478-537)||(21199314-21199373)
[»] scaffold0312 (1 HSPs)
scaffold0312 (372-414)||(11355-11397)


Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 274 - 537
Target Start/End: Original strand, 8933455 - 8933718
Alignment:
Q  274 cttatccaagcttttggatatctcaccaacacatatcatctattctttgttagttactccactcatcatgagtaaataaactctctttgtgatatggctc 373  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8933455 cttatccaagcttttggatgtctcaccaacacatatcatctattctttgttagttactccactcatcatgagtaaataaactctctttgtgatatggctc 8933554  T
Q  374 agggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatgattcaatgcttgattcttgcaaaaca 473  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8933555 agggacaaaagaaaaggtagagaaaatagagaaacactctaatattttcaaagaaaagttatattacttgaatgattcaatgcttgattcttgcaaaaca 8933654  T
Q  474 cttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8933655 cttagtggtgagccttatttatactactctaggaaggttctacattacaaactagaattatcta 8933718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 368 - 537
Target Start/End: Complemental strand, 10911535 - 10911358
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatgattcaatgcttgattctt-- 465  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||      
T  10911535 tggctcagggacaaaaggaaaggtagataaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaatgcttgattctttg 10911436  T
Q  466 ------gcaaaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
           | |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||    
T  10911435 aatgtgcctaaacacttagtggtgagccttatttatactactctaggaagggtctacattacaaactagaaatatcta 10911358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 368 - 537
Target Start/End: Complemental strand, 10909292 - 10909114
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaa-gaaaagttatattatttgaatgattcaatgcttgattctt- 465  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||| |||||||||||||| |||||||||||||||||||||||||     
T  10909292 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaacgaaaagttatattacttgaatgattcaatgcttgattcttt 10909193  T
Q  466 -------gcaaaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
            | |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||    
T  10909192 gaatgtgcctaaacacttagtggtgagccttatttatactactctaggaaggctctacattacaaactagaaatatcta 10909114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 368 - 537
Target Start/End: Complemental strand, 13011881 - 13011704
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatgattcaatgcttgattctt-- 465  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||      
T  13011881 tggctcaggaacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattatttgaatgattcaatgcttgattctttg 13011782  T
Q  466 ------gcaaaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
           | |||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||| || ||||||    
T  13011781 aatgtgtctaaacacttagtggtgagccttatttatactactctaggaaggctctacattaaaaactaaaaatatcta 13011704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 368 - 537
Target Start/End: Complemental strand, 29834046 - 29833878
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatgattcaatgcttgattcttgc 467  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||| |||||||||||||| || | |    
T  29834046 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaaggattcaatgcttga-tcatcc 29833948  T
Q  468 aaaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
    ||||||||  || |||||||||||||||||||||||||||||  ||| |||||| |||||||| ||||||    
T  29833947 aaaacactaggtagtgagccttatttatactactctaggaaggctctccattaccaactagaaatatcta 29833878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 368 - 537
Target Start/End: Original strand, 2403835 - 2404005
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaag-ttatattatttgaatgattcaatgcttgattcttg 466  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||||||| | ||||||||  |||||||||||||||| ||| |||||||||  |      
T  2403835 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgc 2403934  T
Q  467 caaaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
    ||||||||| |||||||| ||||||||||||||||||||||||| ||| ||||||||||||||| ||||||    
T  2403935 caaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatcta 2404005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 367 - 537
Target Start/End: Original strand, 29833075 - 29833253
Alignment:
Q  367 atggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatgattcaatgcttgat----- 461  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||         
T  29833075 atggctcagggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaatgcttgatgattt 29833174  T
Q  462 ---tcttgcaaaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
       | |  |||||||||  ||||||||||||||||||||||||||||||||  ||| ||||||||||||||| ||||||    
T  29833175 gaatgtgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatcta 29833253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 368 - 537
Target Start/End: Original strand, 2409957 - 2410127
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaag-ttatattatttgaatgattcaatgcttgattcttg 466  Q
    ||||||||||||||||| ||||||||||||||||||||||| || ||||||| | ||||||||  |||||||||||||||| ||| |||||||||  |      
T  2409957 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctataatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgc 2410056  T
Q  467 caaaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
    |||||||||  ||||||||||||||||||||||||||||||||  ||| ||||||||| ||| | ||||||    
T  2410057 caaaacactaggtggtgagccttatttatactactctaggaaggctctccattacaaattagcaatatcta 2410127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 368 - 537
Target Start/End: Original strand, 734579 - 734756
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatgattcaatgcttgat--tctt 465  Q
    ||||||||||||||||| ||||||||||||||||||||||||  |||||||| | || |||||||||||||| |||||| ||||||||||||||  ||||    
T  734579 tggctcagggacaaaaggaaaggtagagaaaatagagaaaca--ctaatattctcaaggaaaagttatattacttgaatcattcaatgcttgattatctt 734676  T
Q  466 g--------caaaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
    |        |||||||||  |||||||||||||||||||||| |||||||||  ||| ||||||||||||||| ||||||    
T  734677 gagtatgaccaaaacactaggtggtgagccttatttatactattctaggaaggctctccattacaaactagaaatatcta 734756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 8933338 - 8933410
Alignment:
Q  157 caacaaagcaatcaattactaaagacaaaattactacaccaattttgaaaataatccaaccaacacttgagac 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8933338 caacaaagcaatcaattactaaagacaaaattactacaccaattttgaaaataatccaaccaacacttgagac 8933410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 8933200 - 8933249
Alignment:
Q  18 taagtaactagaattcattacttatttaggtgttgaagctttttgaatgg 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8933200 taagtaactagaattcattacttatttaggtgttgaagctttttgaatgg 8933249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 414
Target Start/End: Original strand, 419174 - 419216
Alignment:
Q  372 tcagggacaaaagaaaaggtagagaaaatagagaaacactcta 414  Q
    |||| ||||||||||| ||||||||||||||||||||||||||    
T  419174 tcagagacaaaagaaatggtagagaaaatagagaaacactcta 419216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 6e-60; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 368 - 537
Target Start/End: Original strand, 42678571 - 42678739
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatgattcaatgcttgattcttgc 467  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||| ||| |    
T  42678571 tggctcagggacaaaaggaaaggtagagaaaataaagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaatgcttgatcctt-c 42678669  T
Q  468 aaaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
    ||||||||| |||||||||||||||||||||||  | ||||| |||||||||||||||||||||||||||    
T  42678670 aaaacacttggtggtgagccttatttatactaccttgggaaggttctacattacaaactagaattatcta 42678739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 368 - 537
Target Start/End: Original strand, 8731176 - 8731353
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatgattcaatgcttgattctt-- 465  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||      
T  8731176 tggctcagggacaaaaggaaaggtagataaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaatgcttgattcttta 8731275  T
Q  466 ------gcaaaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
           | |||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||| ||||||    
T  8731276 aatgtgcctaaacacttagtggtgagccttatttatactactctaggaaggctctacattacaaattagaaatatcta 8731353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 368 - 537
Target Start/End: Complemental strand, 3932899 - 3932721
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatgattcaatgcttgatt---ct 464  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||   ||    
T  3932899 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaatgcttgattatgct 3932800  T
Q  465 tg------caaaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
    ||      |||||||||   ||||||||||||||||||||| |||||||||  ||| ||||||||||||||| ||||||    
T  3932799 tgagtatccaaaacactagatggtgagccttatttatactattctaggaaggctctccattacaaactagaaatatcta 3932721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 368 - 537
Target Start/End: Complemental strand, 3935138 - 3934960
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatgattcaatgcttgatt---ct 464  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||   ||    
T  3935138 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaatgcttgattatgct 3935039  T
Q  465 tg------caaaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
    ||      |||||||||   ||||||||||||||||||||| |||||||||  ||| ||||||||||||||| ||||||    
T  3935038 tgagtatccaaaacactagatggtgagccttatttatactattctaggaaggctctccattacaaactagaaatatcta 3934960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 368 - 530
Target Start/End: Original strand, 8414490 - 8414662
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatgattcaatgcttg---attct 464  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||   || ||    
T  8414490 tggctcagggacaaaaggaaaggtagagaaaatagaaaaacactctaatattctcaaagaaaagttatattatttgaatgattcaatgcttgaatatgct 8414589  T
Q  465 tg-------caaaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaa 530  Q
    ||       |||||||||  ||||||||||||||||||||||||||||||||  ||| |||||||||||||||    
T  8414590 tgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaa 8414662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 368 - 520
Target Start/End: Complemental strand, 18395497 - 18395337
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatgattcaatgcttgattctt-- 465  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||| ||||      
T  18395497 tggcttagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaatgcttgactctttt 18395398  T
Q  466 ------gcaaaacacttagtggtgagccttatttatactactctaggaagattctacatta 520  Q
           | |||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  18395397 aatgtgtctaaacacttagtggtgagccttatttatactactctaggaaggctctacatta 18395337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 368 - 537
Target Start/End: Original strand, 8733495 - 8733675
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaag-ttatattatttgaatgattcaatgct---tgattc 463  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||||| | ||||||||| |||||||||||||||| |||||||||   ||||||    
T  8733495 tggctcagggacaaaagagaaggtagagaaaatagagaaactctctaatattctcaaagaaaagattatattatttgaatgcttcaatgcttgatgattc 8733594  T
Q  464 ttg-------caaaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
    |||       |||||||||  ||||||||||||||||||||||||||||||||  ||| | ||||||||||||| ||||||    
T  8733595 ttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctcctttacaaactagaaatatcta 8733675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 368 - 460
Target Start/End: Original strand, 36464213 - 36464305
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatgattcaatgcttga 460  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||    
T  36464213 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaatgcttga 36464305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 368 - 461
Target Start/End: Original strand, 16496953 - 16497046
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatgattcaatgcttgat 461  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||| | ||||||||||||||||| || ||||||||||||||||||    
T  16496953 tggctcagggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttaaatgattcaatgcttgat 16497046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 368 - 462
Target Start/End: Complemental strand, 19789272 - 19789177
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaa-gaaaagttatattatttgaatgattcaatgcttgatt 462  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||| |||||||||||||| |||||| |||||||||||||||    
T  19789272 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattcaatgcttgatt 19789177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 368 - 461
Target Start/End: Original strand, 16535135 - 16535228
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatgattcaatgcttgat 461  Q
    |||||| ||||||||||  ||||||||||||||||||||||||||||||||| | ||||||||||||||||| || ||||||||||||||||||    
T  16535135 tggctcggggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttaaatgattcaatgcttgat 16535228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 368 - 461
Target Start/End: Complemental strand, 16630527 - 16630434
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatgattcaatgcttgat 461  Q
    |||||| ||||||||||  ||||||||||||||||||||||||||||||||| | ||||||||||||||||| || ||||||||||||||||||    
T  16630527 tggctcggggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttaaatgattcaatgcttgat 16630434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 370 - 462
Target Start/End: Complemental strand, 19786964 - 19786871
Alignment:
Q  370 gctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaa-gaaaagttatattatttgaatgattcaatgcttgatt 462  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| | ||| |||||||||||||| |||||| |||||||||||||||    
T  19786964 gctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattcaatgcttgatt 19786871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 368 - 537
Target Start/End: Complemental strand, 3052387 - 3052210
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatgattcaatgcttgatt---ct 464  Q
    ||||| ||||||||||| || ||||||||||||| ||||||  |||| |||| | |||||||  |||||||||||||||| |||||||||||| |   ||    
T  3052387 tggctgagggacaaaaggaatggtagagaaaataaagaaac--tctattattctcaaagaaagtttatattatttgaatgcttcaatgcttgagtatact 3052290  T
Q  465 tg-------caaaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
    ||       |||||||||  ||||||||||||||||||||||||||||||||  ||| ||||||||||||||| ||||||    
T  3052289 tgagtatatcaaaacactaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatcta 3052210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 469 - 537
Target Start/End: Original strand, 28610350 - 28610418
Alignment:
Q  469 aaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
    |||||||| |||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||    
T  28610350 aaacacttggtggtgagccttatttatactactctagaaaggctctacattacaaactagaaatatcta 28610418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 467 - 537
Target Start/End: Complemental strand, 19786839 - 19786769
Alignment:
Q  467 caaaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
    |||||||||  ||||||||||||||||||||||||||||||||  ||| ||||||||||||||| ||||||    
T  19786839 caaaacactaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatcta 19786769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 467 - 537
Target Start/End: Complemental strand, 19789145 - 19789075
Alignment:
Q  467 caaaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
    |||||||||  |||||||||||||||||||||||||||| |||  ||| ||||||||||||||| ||||||    
T  19789145 caaaacactaggtggtgagccttatttatactactctagtaaggctctccattacaaactagaaatatcta 19789075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 370 - 460
Target Start/End: Original strand, 21769071 - 21769161
Alignment:
Q  370 gctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatgattcaatgcttga 460  Q
    |||||||||  |||| ||||||||||||||||||||||| || ||||||| | |||||||  |  ||||||||||||| ||||||||||||    
T  21769071 gctcagggatgaaaggaaaggtagagaaaatagagaaactctttaatattctcaaagaaagttgttattatttgaatgtttcaatgcttga 21769161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 467 - 537
Target Start/End: Original strand, 36464331 - 36464401
Alignment:
Q  467 caaaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
    |||||||||  ||||||||||||||||||||||||||||||||  ||| ||||| ||||||||| ||||||    
T  36464331 caaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatcta 36464401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 367 - 419
Target Start/End: Complemental strand, 42680863 - 42680811
Alignment:
Q  367 atggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatt 419  Q
    |||||| ||| ||||||  ||||||||||||||||||||||||||||||||||    
T  42680863 atggctgaggaacaaaatgaaaggtagagaaaatagagaaacactctaatatt 42680811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 470 - 537
Target Start/End: Original strand, 19093958 - 19094029
Alignment:
Q  470 aacacttagtggtgagccttatttatactactctaggaagat----tctacattacaaactagaattatcta 537  Q
    ||||||| |||| || |||||||||||||||||||| ||||     ||||||||||||||||||| ||||||    
T  19093958 aacacttggtggcgaaccttatttatactactctagaaagacgtactctacattacaaactagaaatatcta 19094029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 2e-59; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 368 - 537
Target Start/End: Original strand, 42277782 - 42277959
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatgattcaatgcttgattctt-- 465  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||      
T  42277782 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaatgcttgattctttg 42277881  T
Q  466 ------gcaaaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
           | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  42277882 aatgtgcctaaacacttagtggtgagccttatttatactactctaggaagactctacattacaaactagaaatatcta 42277959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 367 - 537
Target Start/End: Original strand, 42275555 - 42275733
Alignment:
Q  367 atggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatgattcaatgcttgattctt- 465  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||| ||||||||||     
T  42275555 atggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaatacttgattcttt 42275654  T
Q  466 -------gcaaaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
            | |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||    
T  42275655 gaatgtgcctaaacacttagtggtgagccttatttatactactctaggaaggctctacattacaaactagaaatatcta 42275733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 374 - 508
Target Start/End: Original strand, 8995076 - 8995210
Alignment:
Q  374 agggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatgattcaatgcttgattcttgcaaaaca 473  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||| | ||||||||||||||||| |||||||||||||||||||| | || |||||||    
T  8995076 agggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaagttatattacttgaatgattcaatgcttgagtattacaaaaca 8995175  T
Q  474 cttagtggtgagccttatttatactactctaggaa 508  Q
    ||| |||| ||||||||||||||||||||||||||    
T  8995176 cttggtggagagccttatttatactactctaggaa 8995210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 368 - 536
Target Start/End: Complemental strand, 31487069 - 31486890
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaa-gaaaagttatattatttgaatgattcaatgcttgat--tct 464  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||| |||||||||||||| |||||| ||||||||||||||  |||    
T  31487069 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattcaatgcttgattatct 31486970  T
Q  465 tg-------caaaacactta-gtggtgagccttatttatactactctaggaagattctacattacaaactagaattatct 536  Q
    ||       ||||||||||| ||||||||||||||||||||||||||||||||  ||| ||||||||||||||| |||||    
T  31486969 tgagtatgccaaaacacttaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatct 31486890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 368 - 536
Target Start/End: Complemental strand, 31489353 - 31489174
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaa-gaaaagttatattatttgaatgattcaatgcttgat--tct 464  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||| | ||| |||||||||||||| |||||| ||||||||||||||  |||    
T  31489353 tggcttagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattcaatgcttgattatct 31489254  T
Q  465 tg-------caaaacactta-gtggtgagccttatttatactactctaggaagattctacattacaaactagaattatct 536  Q
    ||       ||||||||||| |||||||||||||||||||||||| |||||||  ||| ||||||||||||||| |||||    
T  31489253 tgagtatgccaaaacacttaggtggtgagccttatttatactactttaggaaggctctccattacaaactagaaatatct 31489174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 367 - 462
Target Start/End: Original strand, 5164150 - 5164245
Alignment:
Q  367 atggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatgattcaatgcttgatt 462  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||| ||||||||||||||    
T  5164150 atggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgcttcaatgcttgatt 5164245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 368 - 537
Target Start/End: Complemental strand, 23860187 - 23860009
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatgattcaatgcttgatt--ctt 465  Q
    ||||||||||||||||| ||| | | ||||||||||||||| |||||||||| | |||||||  |  |||||||| |||| |||||||||||| |  |||    
T  23860187 tggctcagggacaaaaggaaaagcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaatgcttgagtatctt 23860088  T
Q  466 gca-------aaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
    | |       |||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  23860087 gaatatacgtaaacacttggtggtgagccttatttatactactctaggaaggctctacattacaaactagaattatcta 23860009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 374 - 455
Target Start/End: Complemental strand, 15730093 - 15730012
Alignment:
Q  374 agggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatgattcaatg 455  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||| | ||| ||||||||||||| |||||||||||||||    
T  15730093 agggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaataaaagttatattacttgaatgattcaatg 15730012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 469 - 538
Target Start/End: Complemental strand, 29802054 - 29801985
Alignment:
Q  469 aaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatctac 538  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||  ||||||||||||||| |||||||    
T  29802054 aaacacttggtggtgagccttatttatactactctaggaagactccccattacaaactagaaatatctac 29801985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 376 - 537
Target Start/End: Original strand, 34576612 - 34576769
Alignment:
Q  376 ggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatgattcaatgcttgattcttgcaaaacact 475  Q
    |||||||||  |||||||||||||||||||||| |||||||||| | |||||||    |||||||||||||| || ||| ||| | |    | |||||||    
T  34576612 ggacaaaaggtaaggtagagaaaatagagaaactctctaatattctcaaagaaag---atattatttgaatgcttgaattcttcaatgc--ctaaacact 34576706  T
Q  476 tagtggtgagccttatttatactactc-taggaagattctacattacaaactagaattatcta 537  Q
    |  ||||||||||||||||||||| || |||||||  ||||||||||||||||||| ||||||    
T  34576707 tgatggtgagccttatttatactaatcttaggaaggctctacattacaaactagaaatatcta 34576769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 366 - 430
Target Start/End: Original strand, 39816087 - 39816151
Alignment:
Q  366 tatggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaa 430  Q
    ||||||||| ||||||||| ||||||||||||||||||||||| |||||||||| | ||||||||    
T  39816087 tatggctcacggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaa 39816151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 3e-55; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 368 - 537
Target Start/End: Original strand, 11849917 - 11850085
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatgattcaatgcttgattcttgc 467  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |  | |    
T  11849917 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattatttgaatgattcaatgcttga-tgatcc 11850015  T
Q  468 aaaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
    ||||||||  ||||||||||||||||||||||||||||||||  ||| |||||| |||||||| ||||||    
T  11850016 aaaacactaggtggtgagccttatttatactactctaggaaggctctccattaccaactagaaatatcta 11850085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 368 - 537
Target Start/End: Original strand, 11852175 - 11852343
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatgattcaatgcttgattcttgc 467  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||    | |    
T  11852175 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaatgcttga-cgatcc 11852273  T
Q  468 aaaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
    ||||||||  ||||||||||||||||||||||||||||||||  ||| |||||| |||||||| ||||||    
T  11852274 aaaacactaggtggtgagccttatttatactactctaggaaggctctccattaccaactagaaatatcta 11852343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 368 - 537
Target Start/End: Original strand, 1779222 - 1779386
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatgattcaatgcttgattcttgc 467  Q
    ||||||||||||||||| |||     ||||||||||| |||||||||||||| | ||||||||||||||||| |||||||||||||| ||||||| || |    
T  1779222 tggctcagggacaaaaggaaa-----agaaaatagaggaacactctaatattctcaaagaaaagttatattacttgaatgattcaatacttgatttttac 1779316  T
Q  468 aaaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
    |||||||||  ||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||    
T  1779317 aaaacacttgttggtgagccttatttataccactctaggaaggctctacattacaaactagaattatcta 1779386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 368 - 537
Target Start/End: Complemental strand, 37215638 - 37215469
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaag-ttatattatttgaatgattcaatgcttgattcttg 466  Q
    |||||||||||||||||  |||||||||||||||||||||| |||||||||| | ||||||||| |||||||||||||||| |||||||||||||  | |    
T  37215638 tggctcagggacaaaagggaaggtagagaaaatagagaaactctctaatattctcaaagaaaagattatattatttgaatgcttcaatgcttgatgat-g 37215540  T
Q  467 caaaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
    |||||||||  ||||||||||||||||||||||||||||||||  ||| |||||| |||||||| ||||||    
T  37215539 caaaacactatgtggtgagccttatttatactactctaggaaggctcttcattaccaactagaaatatcta 37215469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 367 - 537
Target Start/End: Original strand, 23164253 - 23164418
Alignment:
Q  367 atggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatgattcaatgcttgattcttg 466  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||      |     
T  23164253 atggctcagggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaatgctt-----atc 23164347  T
Q  467 caaaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
    |||||||||  |||||| |||||||||||||||||||||||||  ||| |||||| |||||||| ||||||    
T  23164348 caaaacactaggtggtgggccttatttatactactctaggaaggctctccattaccaactagaaatatcta 23164418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 368 - 537
Target Start/End: Complemental strand, 22601087 - 22600918
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaag-ttatattatttgaatgattcaatgcttgattcttg 466  Q
    |||||||||||||||||  |||||||||||||||||||||| |||||||||| | ||||||||| |||||||||||||||| |||||||||||| |  |     
T  22601087 tggctcagggacaaaagggaaggtagagaaaatagagaaactctctaatattctcaaagaaaagattatattatttgaatgcttcaatgcttga-tgatc 22600989  T
Q  467 caaaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
    |||||||||  |||||||||||||||||||||||| ||| |||| ||| |||||| |||||||| ||||||    
T  22600988 caaaacactaggtggtgagccttatttatactactttagcaagactctccattaccaactagaaatatcta 22600918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 368 - 537
Target Start/End: Complemental strand, 21743797 - 21743628
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatgattcaatgcttgattcttgc 467  Q
    |||| |||||||||||| ||||||||||||||||||||||| |||||||||| | |||||||  |||||||||||||||  |||||||||||| | |  |    
T  21743797 tggcccagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaagtttatattatttgaattcttcaatgcttgagtatgcc 21743698  T
Q  468 aaaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
     || ||||| |||||||  |||||||||||||||||||||||  |||||| ||||||||| || ||||||    
T  21743697 taaccacttggtggtgaatcttatttatactactctaggaaggctctacactacaaactaaaaatatcta 21743628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 423 - 537
Target Start/End: Complemental strand, 37207992 - 37207878
Alignment:
Q  423 aaagaaaag-ttatattatttgaatgattcaatgcttgattcttgcaaaacacttagtggtgagccttatttatactactctaggaagattctacattac 521  Q
    ||||||||| |||||||||||||||| |||||||||||||  | ||||||||||  ||||||||||||||||||||||||||||||||  ||| ||||||    
T  37207992 aaagaaaagattatattatttgaatgcttcaatgcttgatgat-gcaaaacactaggtggtgagccttatttatactactctaggaaggctctccattac 37207894  T
Q  522 aaactagaattatcta 537  Q
     |||||||| ||||||    
T  37207893 caactagaaatatcta 37207878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 368 - 441
Target Start/End: Complemental strand, 37208070 - 37207996
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaag-ttatattatt 441  Q
    |||||||||||||||||  |||||||||||||||||||||| |||||||||| |  |||||||| ||||||||||    
T  37208070 tggctcagggacaaaagggaaggtagagaaaatagagaaactctctaatattctcgaagaaaagattatattatt 37207996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 368 - 447
Target Start/End: Complemental strand, 15469258 - 15469179
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatg 447  Q
    ||||||||||||||||| ||||||| | ||||||||||||| |||||||||| | |||||||  |  |||||||||||||    
T  15469258 tggctcagggacaaaaggaaaggtaaaaaaaatagagaaactctctaatattctcaaagaaagttgttattatttgaatg 15469179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 469 - 509
Target Start/End: Original strand, 1779181 - 1779221
Alignment:
Q  469 aaacacttagtggtgagccttatttatactactctaggaag 509  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  1779181 aaacacttggtggtgagccttatttatactactctaggaag 1779221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 2e-47; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 368 - 537
Target Start/End: Complemental strand, 13774336 - 13774157
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatgattcaatgcttgat------ 461  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||          
T  13774336 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaatgcttgatgatgct 13774237  T
Q  462 ----tcttgcaaaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
        | |  |||||||||  ||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||    
T  13774236 tcagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctacattacaaactagaaatatcta 13774157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 371 - 537
Target Start/End: Complemental strand, 13776630 - 13776455
Alignment:
Q  371 ctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaa-gaaaagttatattatttgaatgattcaatgcttgattctt---- 465  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| | ||| |||||||||||||| |||||||||||||||||||||||||        
T  13776630 ctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaacgaaaagttatattacttgaatgattcaatgcttgattctttgaa 13776531  T
Q  466 ----gcaaaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
         | |||||||||| ||||||||||||||||||||||||||||||  ||| ||||||||||||||| ||||||    
T  13776530 tgtgcctaaacacttagcggtgagccttatttatactactctaggaaggctctgcattacaaactagaaatatcta 13776455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 367 - 537
Target Start/End: Original strand, 50855770 - 50855939
Alignment:
Q  367 atggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatgattcaatgcttgattcttg 466  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| |  | |||||||||||||| |||||||||||||||||||| |  |     
T  50855770 atggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcgaggaaaagttatattacttgaatgattcaatgcttga-tgatc 50855868  T
Q  467 caaaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
    |||||||||  ||||||| ||||||||||||||||||||||||  ||| |||||| |||||||| ||||||    
T  50855869 caaaacactaggtggtgaaccttatttatactactctaggaaggctctccattaccaactagaaatatcta 50855939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 368 - 537
Target Start/End: Complemental strand, 45162364 - 45162185
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatgattcaatgct---tgattct 464  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||| |   |||| ||    
T  45162364 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaatgtttgatgatgct 45162265  T
Q  465 tg-------caaaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
    ||       |||||||||  |||||||||||||||||||||| |||||||||| ||| ||||||||||||||| ||||||    
T  45162264 tgagtatgccaaaacactaggtggtgagccttatttatactattctaggaagactctccattacaaactagaaatatcta 45162185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 368 - 537
Target Start/End: Original strand, 42468439 - 42468617
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatgattcaatgcttgattct--- 464  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||| |||||||||||||  |       
T  42468439 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgcttcaatgcttgatgatgct 42468538  T
Q  465 ------tgcaaaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
          | |||||||||   |||||||||||||||||||||||||||||||  ||| ||||||||||||||| ||||||    
T  42468539 tcagtatccaaaacactagatggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatcta 42468617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 368 - 537
Target Start/End: Original strand, 42470768 - 42470946
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatgattcaatgcttgattct--- 464  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||| |||||||||||||  |       
T  42470768 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgcttcaatgcttgatgatgct 42470867  T
Q  465 ------tgcaaaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
          | |||||||||   |||||||||||||||||||||||||||||||  ||| ||||||||||||||| ||||||    
T  42470868 tcagtatccaaaacactagatggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatcta 42470946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 368 - 537
Target Start/End: Original strand, 19429076 - 19429255
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagt-tatattatttgaatgattcaatgcttga--ttct 464  Q
    ||||||| ||||||||| ||||||||||||||||||||||| |||||||||| | |||||||||| ||||||| ||||||||||||||||||||   |||    
T  19429076 tggctcacggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaagtatatattacttgaatgattcaatgcttgagtatct 19429175  T
Q  465 tg-------caaaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
    ||       | |||||||| ||||||||||||||||||||||||||||| ||  ||| ||||||||||||||| ||||||    
T  19429176 tgaatatatctaaacacttggtggtgagccttatttatactactctaggtaggctctccattacaaactagaaatatcta 19429255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 370 - 537
Target Start/End: Complemental strand, 45167254 - 45167077
Alignment:
Q  370 gctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatgattcaatgct---tgattcttg 466  Q
    ||||| ||||||||| |||| ||  ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |   |||| ||||    
T  45167254 gctcatggacaaaaggaaagttaccgaaaatagagaaacactctaatattcttaaaaaaaagttatattatttgaatgattcaatgtttgatgatgcttg 45167155  T
Q  467 -------caaaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
           |||||||||  |||||||||||||||||||||| |||||||||| ||| ||||||||||||||| ||||||    
T  45167154 agtatgccaaaacactaggtggtgagccttatttatactattctaggaagactctccattacaaactagaaatatcta 45167077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 368 - 537
Target Start/End: Complemental strand, 8739562 - 8739399
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatgattcaatgcttgattcttgc 467  Q
    ||||||||||| ||||| ||||  |||||||||| |||||| ||||||| || | || ||||  |  ||||| ||||||  ||||||| |||| |         
T  8739562 tggctcagggataaaaggaaagaaagagaaaataaagaaactctctaatgttctcaaggaaagatattattagttgaattcttcaatgattgagt----- 8739468  T
Q  468 aaaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
     |||||||| ||||| |||||| ||||||| |||||||||||  ||||||||||||||||||| ||||||    
T  8739467 -aaacacttggtggtaagccttgtttatacaactctaggaaggctctacattacaaactagaaatatcta 8739399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 468 - 530
Target Start/End: Original strand, 24908156 - 24908218
Alignment:
Q  468 aaaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaa 530  Q
    ||||||||| ||||||| || ||||||||||||||||||||| ||| || ||||||| |||||    
T  24908156 aaaacacttggtggtgaaccctatttatactactctaggaaggttccacgttacaaagtagaa 24908218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 481 - 538
Target Start/End: Complemental strand, 43179710 - 43179653
Alignment:
Q  481 gtgagccttatttatactactctaggaagattctacattacaaactagaattatctac 538  Q
    |||||||| |||||||||||||||| || | ||| ||||||||||||||| |||||||    
T  43179710 gtgagcctaatttatactactctagaaaaactctgcattacaaactagaaatatctac 43179653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 2e-47; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 368 - 537
Target Start/End: Complemental strand, 4531020 - 4530841
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatgattcaatgcttgat------ 461  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||          
T  4531020 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaatgcttgatgatgct 4530921  T
Q  462 ----tcttgcaaaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
        | |  |||||||||  ||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||    
T  4530920 tcagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctacattacaaactagaaatatcta 4530841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 368 - 537
Target Start/End: Complemental strand, 4533317 - 4533138
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatgattcaatgcttgat------ 461  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||          
T  4533317 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaatgcttgatgatgct 4533218  T
Q  462 ----tcttgcaaaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
        | |  |||||||||  ||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||    
T  4533217 tcagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctacattacaaactagaaatatcta 4533138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 469 - 537
Target Start/End: Original strand, 18966221 - 18966289
Alignment:
Q  469 aaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
    |||||||| |||||||||||||||||||||||||||||||||  || ||| ||| ||||||| ||||||    
T  18966221 aaacacttggtggtgagccttatttatactactctaggaagacactccatgacacactagaaatatcta 18966289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 365 - 537
Target Start/End: Complemental strand, 1804 - 1622
Alignment:
Q  365 atatggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatgattcaatgct---tgat 461  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||  | ||||||||||||||||| |||||||||||||||||   ||||    
T  1804 atatggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatatcctcaaagaaaagttatattacttgaatgattcaatgcttgatgat 1705  T
Q  462 tcttg-------caaaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
     ||||       |||||||||  ||||||||||||||||||||||||||||||||  ||| ||||||||||||||| ||||||    
T  1704 gcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatcta 1622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 3e-43; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 368 - 537
Target Start/End: Complemental strand, 4877176 - 4876998
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatgattcaatgcttgat--tctt 465  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| | || |||||||||||||| |||||| ||||||||||||||  ||||    
T  4877176 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaggaaaagttatattacttgaatcattcaatgcttgattatctt 4877077  T
Q  466 g-------caaaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
    |       |||||||||   |||||||||||||||||||||||||||||||  ||| ||||||||||||||| ||||||    
T  4877076 gagtatgtcaaaacactagatggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatcta 4876998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 368 - 537
Target Start/End: Complemental strand, 4879504 - 4879326
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatgattcaatgcttgat--tctt 465  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| | || |||||||||||||| |||||| ||||||||||||||  ||||    
T  4879504 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaggaaaagttatattacttgaatcattcaatgcttgattatctt 4879405  T
Q  466 g-------caaaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
    |       |||||||||   |||||||||||||||||||||||||||||||  ||| ||||||||||||||| ||||||    
T  4879404 gagtatgtcaaaacactagatggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatcta 4879326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 368 - 537
Target Start/End: Original strand, 24519153 - 24519332
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatgattcaatgcttgatt---ct 464  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| |  |||||||||||||||| ||||||||||||||||||||||   ||    
T  24519153 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagttatattacttgaatgattcaatgcttgattatgct 24519252  T
Q  465 t-------gcaaaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
    |        |||||||||   |||||||||||||||||||||||||||||||  ||| ||||| ||||||||| ||||||    
T  24519253 tcagtatgccaaaacactagatggtgagccttatttatactactctaggaaggctctccattataaactagaaatatcta 24519332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 368 - 536
Target Start/End: Original strand, 36379465 - 36379644
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaa-gaaaagttatattatttgaatgattcaatgcttgat--tct 464  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||| |||||||||||||| |||||| ||||||||||||||  |||    
T  36379465 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattcaatgcttgattatct 36379564  T
Q  465 tg-------caaaacactta-gtggtgagccttatttatactactctaggaagattctacattacaaactagaattatct 536  Q
    ||       ||||||||  | ||||||||||||||||||||||||||||||||  ||| ||||||||||||||| |||||    
T  36379565 tgagtatgccaaaacacccaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatct 36379644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 367 - 462
Target Start/End: Original strand, 21268119 - 21268215
Alignment:
Q  367 atggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaa-gaaaagttatattatttgaatgattcaatgcttgatt 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||| |||||| |||||||||||||||    
T  21268119 atggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattcaatgcttgatt 21268215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 368 - 536
Target Start/End: Original strand, 36377181 - 36377359
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaa-gaaaagttatattatttgaatgattcaatgcttgattctt- 465  Q
    ||||||| ||||||| |||| ||||||||||||||||||||||||||||||| | ||| |||||||||||||| |||||| ||||||||||||||| ||     
T  36377181 tggctcaaggacaaaggaaa-ggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattcaatgcttgattattt 36377279  T
Q  466 --------gcaaaacactta-gtggtgagccttatttatactactctaggaagattctacattacaaactagaattatct 536  Q
             ||||||||||| ||||||||||||||||||||||||||||||||  ||| ||||||||| ||||| |||||    
T  36377280 tgagtatgccaaaacacttaggtggtgagccttatttatactactctaggaaggctctccattacaaagtagaaatatct 36377359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 469 - 537
Target Start/End: Original strand, 21268240 - 21268308
Alignment:
Q  469 aaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
    |||||||  || |||||||||||||||||||||||||||||  ||| ||||||||||||||| ||||||    
T  21268240 aaacactaggtagtgagccttatttatactactctaggaaggctctccattacaaactagaaatatcta 21268308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 368 - 537
Target Start/End: Complemental strand, 29514 - 29345
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatgattcaatgcttgattcttgc 467  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||| || | |||||||  |  |||||||| |||| |||||||||||| | |  |    
T  29514 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatgttctcaaagaaagttgttattatttaaatgcttcaatgcttgagtatgcc 29415  T
Q  468 aaaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
     |  ||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||| || ||||||    
T  29414 tacgcacttggtggtgagccttatttatactactctaggaagactctccattacaaactaaaaatatcta 29345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 368 - 537
Target Start/End: Complemental strand, 31829 - 31660
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatgattcaatgcttgattcttgc 467  Q
    ||||||| ||||||||| ||||||||||||||||||||||| ||||||| || | |||||||  |  ||||||||||||| | |||||||||| | |  |    
T  31829 tggctcaaggacaaaaggaaaggtagagaaaatagagaaactctctaatgttctcaaagaaatttgttattatttgaatgctacaatgcttgagtatgcc 31730  T
Q  468 aaaacacttagtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
     | |||||| ||||||||||||||||||||||||||||||||  ||| ||||||||||||||| ||||||    
T  31729 tacacacttggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatcta 31660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1361 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: scaffold1361
Description:

Target: scaffold1361; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 368 - 498
Target Start/End: Complemental strand, 140 - 1
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaa-gaaaagttatattatttgaatgattcaatgcttgattctt- 465  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||| | ||| |||||||||||||| |||||||||||||||||||||||||     
T  140 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactttaatattctcaaacgaaaagttatattacttgaatgattcaatgcttgattcttt 41  T
Q  466 -------gcaaaacacttagtggtgagccttatttatact 498  Q
            | ||||||||||||||||||||||||||||||    
T  40 gaatgtgcctaaacacttagtggtgagccttatttatact 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 368 - 461
Target Start/End: Complemental strand, 88531 - 88438
Alignment:
Q  368 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatgattcaatgcttgat 461  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||||| | ||||||||||||||||| ||||||||||||||| |||||    
T  88531 tggctcagggacaaaaggaaaggtagagaaaatagagaaagactctaatattctcaaagaaaagttatattacttgaatgattcaatgtttgat 88438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 367 - 446
Target Start/End: Original strand, 3706 - 3785
Alignment:
Q  367 atggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaat 446  Q
    |||||||||||||||||| ||||||||||||||||||| ||| |||||||||| | |||||||  |||||||||||||||    
T  3706 atggctcagggacaaaaggaaaggtagagaaaatagagtaactctctaatattctcaaagaaagtttatattatttgaat 3785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 370 - 510
Target Start/End: Complemental strand, 20642359 - 20642220
Alignment:
Q  370 gctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatatttttaaagaaaagttatattatttgaatgattcaatgcttgattcttgcaa 469  Q
    ||||||||||||||  ||||||||||||||||||||||  |||||||||| | |||||||  |  | ||||||||||| |||||||||||| |  | | |    
T  20642359 gctcagggacaaaatgaaaggtagagaaaatagagaaattctctaatattctcaaagaaatatatttttatttgaatgcttcaatgcttgact-atccta 20642261  T
Q  470 aacacttagtggtgagccttatttatactactctaggaaga 510  Q
     ||||||  || |||||||||||||||||||| ||||||||    
T  20642260 cacacttgatgatgagccttatttatactactgtaggaaga 20642220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 478 - 537
Target Start/End: Complemental strand, 21199373 - 21199314
Alignment:
Q  478 gtggtgagccttatttatactactctaggaagattctacattacaaactagaattatcta 537  Q
    ||||||| ||||||||||| ||||| ||||||  | ||||||||||||||||| ||||||    
T  21199373 gtggtgaaccttatttatagtactccaggaaggctgtacattacaaactagaaatatcta 21199314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 414
Target Start/End: Complemental strand, 11397 - 11355
Alignment:
Q  372 tcagggacaaaagaaaaggtagagaaaatagagaaacactcta 414  Q
    |||| ||||||||||| ||||||||||||||||||||||||||    
T  11397 tcagagacaaaagaaatggtagagaaaatagagaaacactcta 11355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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