View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13121_low_2 (Length: 368)

Name: NF13121_low_2
Description: NF13121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13121_low_2
NF13121_low_2
[»] chr1 (29 HSPs)
chr1 (1-197)||(29434653-29434849)
chr1 (208-361)||(29434944-29435097)
chr1 (289-361)||(29763167-29763240)
chr1 (291-361)||(42572705-42572776)
chr1 (298-361)||(27487614-27487678)
chr1 (212-304)||(41804039-41804131)
chr1 (318-361)||(26637204-26637247)
chr1 (318-361)||(44596917-44596960)
chr1 (244-361)||(6434755-6434873)
chr1 (268-361)||(13972093-13972187)
chr1 (212-310)||(46973179-46973276)
chr1 (318-359)||(49927451-49927492)
chr1 (262-361)||(13147521-13147621)
chr1 (298-361)||(14174859-14174923)
chr1 (212-311)||(18975119-18975218)
chr1 (212-279)||(36908553-36908620)
chr1 (212-311)||(46141757-46141856)
chr1 (318-361)||(51269020-51269063)
chr1 (212-316)||(26633505-26633606)
chr1 (269-361)||(29709259-29709352)
chr1 (208-304)||(49927519-49927615)
chr1 (212-311)||(6437538-6437637)
chr1 (209-304)||(11183158-11183253)
chr1 (208-279)||(19054030-19054101)
chr1 (269-354)||(24364680-24364766)
chr1 (331-361)||(41779774-41779804)
chr1 (238-312)||(52802131-52802205)
chr1 (291-347)||(49395657-49395714)
chr1 (318-361)||(49426769-49426813)
[»] chr3 (33 HSPs)
chr3 (209-359)||(41802970-41803121)
chr3 (208-361)||(13896824-13896978)
chr3 (208-359)||(55207613-55207765)
chr3 (238-361)||(52570514-52570638)
chr3 (268-361)||(43476223-43476317)
chr3 (208-359)||(51402348-51402500)
chr3 (238-361)||(34694382-34694506)
chr3 (268-361)||(55385168-55385262)
chr3 (208-311)||(19440227-19440330)
chr3 (212-361)||(49219739-49219889)
chr3 (208-304)||(7247866-7247962)
chr3 (291-361)||(51696522-51696593)
chr3 (269-350)||(24703374-24703456)
chr3 (320-361)||(19454299-19454340)
chr3 (239-358)||(46347672-46347791)
chr3 (318-361)||(2426566-2426609)
chr3 (268-361)||(4004750-4004845)
chr3 (318-361)||(7245174-7245217)
chr3 (268-361)||(36134354-36134449)
chr3 (318-357)||(41137790-41137829)
chr3 (296-361)||(45101796-45101862)
chr3 (329-361)||(34648150-34648182)
chr3 (238-361)||(41577076-41577200)
chr3 (321-361)||(43568951-43568991)
chr3 (208-311)||(2432942-2433045)
chr3 (212-311)||(41579723-41579822)
chr3 (211-294)||(42756133-42756216)
chr3 (262-311)||(1294076-1294125)
chr3 (238-361)||(2271260-2271385)
chr3 (238-303)||(41805682-41805747)
chr3 (238-303)||(46344938-46345003)
chr3 (289-361)||(49609435-49609508)
chr3 (238-310)||(13747719-13747790)
[»] chr7 (19 HSPs)
chr7 (208-359)||(30355189-30355341)
chr7 (208-358)||(28980123-28980275)
chr7 (212-361)||(46863292-46863442)
chr7 (239-361)||(41047779-41047902)
chr7 (264-361)||(40587688-40587786)
chr7 (238-361)||(36394886-36395010)
chr7 (212-316)||(46860486-46860590)
chr7 (298-361)||(21188374-21188438)
chr7 (268-361)||(42682025-42682119)
chr7 (239-303)||(41049196-41049260)
chr7 (268-361)||(17838681-17838776)
chr7 (212-279)||(21185594-21185661)
chr7 (292-357)||(43686859-43686925)
chr7 (320-361)||(34139955-34139996)
chr7 (318-361)||(28115480-28115523)
chr7 (212-310)||(47060902-47060999)
chr7 (238-310)||(37340303-37340375)
chr7 (238-310)||(42499410-42499482)
chr7 (323-359)||(48316259-48316295)
[»] chr2 (20 HSPs)
chr2 (208-359)||(41500184-41500336)
chr2 (208-361)||(43491080-43491234)
chr2 (212-361)||(24512142-24512292)
chr2 (288-361)||(2920464-2920538)
chr2 (208-310)||(25184830-25184931)
chr2 (259-355)||(10365746-10365843)
chr2 (208-361)||(2648088-2648242)
chr2 (208-310)||(35490651-35490753)
chr2 (214-310)||(43943666-43943762)
chr2 (208-310)||(34921759-34921860)
chr2 (212-304)||(2917658-2917750)
chr2 (208-316)||(35493335-35493443)
chr2 (318-361)||(16580568-16580611)
chr2 (318-361)||(40679545-40679588)
chr2 (266-361)||(29093779-29093872)
chr2 (262-311)||(26543988-26544037)
chr2 (320-361)||(39393121-39393162)
chr2 (241-310)||(41183224-41183292)
chr2 (333-361)||(34638234-34638262)
chr2 (212-304)||(45475415-45475507)
[»] chr6 (14 HSPs)
chr6 (212-361)||(12783905-12784055)
chr6 (208-361)||(13401457-13401611)
chr6 (318-361)||(29061352-29061395)
chr6 (318-361)||(29065810-29065853)
chr6 (318-361)||(29074823-29074866)
chr6 (318-361)||(29079587-29079630)
chr6 (318-361)||(29107396-29107439)
chr6 (318-354)||(26855977-26856013)
chr6 (212-311)||(13404631-13404730)
chr6 (318-361)||(17596764-17596807)
chr6 (238-310)||(29076323-29076395)
chr6 (238-310)||(29109856-29109928)
chr6 (238-310)||(29111296-29111368)
chr6 (298-361)||(32034340-32034404)
[»] chr8 (15 HSPs)
chr8 (208-359)||(41858073-41858223)
chr8 (212-361)||(18441389-18441539)
chr8 (211-304)||(41855342-41855435)
chr8 (272-357)||(26451515-26451601)
chr8 (238-359)||(42602461-42602583)
chr8 (212-311)||(18438609-18438708)
chr8 (298-361)||(3395927-3395991)
chr8 (208-310)||(18205757-18205859)
chr8 (208-310)||(40077250-40077352)
chr8 (320-361)||(22547527-22547568)
chr8 (324-361)||(41274680-41274717)
chr8 (318-361)||(24860464-24860507)
chr8 (208-294)||(39751045-39751130)
chr8 (212-301)||(7168063-7168152)
chr8 (238-311)||(42605233-42605306)
[»] chr5 (18 HSPs)
chr5 (209-361)||(18307226-18307379)
chr5 (212-279)||(18310052-18310119)
chr5 (238-361)||(542738-542862)
chr5 (212-347)||(20192328-20192464)
chr5 (212-311)||(3603147-3603246)
chr5 (268-361)||(25497542-25497636)
chr5 (212-304)||(34682232-34682324)
chr5 (212-361)||(3600311-3600462)
chr5 (268-361)||(11346038-11346133)
chr5 (318-359)||(42865754-42865795)
chr5 (212-310)||(18538335-18538433)
chr5 (321-361)||(1401388-1401428)
chr5 (212-304)||(8702204-8702296)
chr5 (212-316)||(25499881-25499985)
chr5 (208-304)||(41201699-41201795)
chr5 (318-361)||(35564343-35564386)
chr5 (212-310)||(34123935-34124033)
chr5 (238-311)||(20200147-20200220)
[»] chr4 (29 HSPs)
chr4 (268-361)||(56138283-56138377)
chr4 (212-343)||(29700268-29700400)
chr4 (238-361)||(958542-958665)
chr4 (262-361)||(44561278-44561378)
chr4 (298-361)||(34530743-34530807)
chr4 (298-361)||(39588127-39588191)
chr4 (306-361)||(56304919-56304975)
chr4 (208-311)||(37959719-37959822)
chr4 (272-361)||(42885484-42885576)
chr4 (268-347)||(4786296-4786376)
chr4 (208-311)||(11494515-11494617)
chr4 (318-361)||(34154376-34154419)
chr4 (318-361)||(51429277-51429320)
chr4 (238-304)||(6280858-6280924)
chr4 (212-316)||(955767-955871)
chr4 (238-357)||(1041936-1042056)
chr4 (208-304)||(8109362-8109458)
chr4 (318-354)||(11287557-11287593)
chr4 (239-311)||(33383807-33383879)
chr4 (214-310)||(41023363-41023459)
chr4 (212-300)||(49572910-49572998)
chr4 (298-359)||(6283417-6283479)
chr4 (212-310)||(9889969-9890067)
chr4 (212-310)||(21470878-21470976)
chr4 (238-316)||(51426538-51426616)
chr4 (321-354)||(23949961-23949994)
chr4 (264-359)||(28081485-28081582)
chr4 (212-276)||(18578624-18578688)
chr4 (260-304)||(21538495-21538539)
[»] scaffold0199 (1 HSPs)
scaffold0199 (268-361)||(12335-12430)
[»] scaffold0192 (1 HSPs)
scaffold0192 (318-361)||(18847-18890)
[»] scaffold0176 (1 HSPs)
scaffold0176 (320-361)||(880-921)
[»] scaffold0794 (1 HSPs)
scaffold0794 (241-310)||(5276-5344)
[»] scaffold0618 (1 HSPs)
scaffold0618 (238-303)||(3886-3951)


Alignment Details
Target: chr1 (Bit Score: 173; Significance: 6e-93; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 29434653 - 29434849
Alignment:
Q  1 ttgaaatgaaatatgctgcgatcaacacagtgagagtgtcgtgattgatgacaagttcatacggatacagtagcagctccgtactaaattgcccaaaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||    
T  29434653 ttgaaatgaaatatgctgcgatcaacacagtgagagtgtcgtgattgatgacaagttgatacggatactgtagcagctccgcactaaattgcccaaaatt 29434752  T
Q  101 ccttttcctagcttacagctcgttaaaattagcttataagctgcctgtgagcttagtgcttgttaaaatttgatgcccgctgtttgttgtttctttt 197  Q
    || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  29434753 ccatttcctagcttacagcttgttaaaattagcttataagctgcctgtgagcttagtgcttgttaaaatttgatggccgctgtttgttgtttctttt 29434849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 208 - 361
Target Start/End: Original strand, 29434944 - 29435097
Alignment:
Q  208 cacgagtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgc 307  Q
    ||||| ||||||||| |||| ||  |||  ||||||||| |||||||||| ||||||||||||||||||||||| || ||||||||| ||||||||| ||    
T  29434944 cacgaataaaatacgtttttaccctcttggcagttaactttcgaagaattcaataaccgactgcagttaacttccgatgacaacctcggtagttaactgc 29435043  T
Q  308 cgaagatttttgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
     || |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29435044 agaggatttttgctacaaatttggcagaagttctctcatccattattcatctca 29435097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 289 - 361
Target Start/End: Complemental strand, 29763240 - 29763167
Alignment:
Q  289 aacctcagtagttaaccgccgaagatttt-tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    |||||| ||||||||| ||||| ||| || |||||||||| |||||||||||||||||||||||||||||||||    
T  29763240 aacctcggtagttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 29763167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 291 - 361
Target Start/End: Complemental strand, 42572776 - 42572705
Alignment:
Q  291 cctcagtagttaaccgccgaagatttt-tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    |||| ||||||||| ||||| ||| || |||||||||| |||||||||||||||||||||||||||||||||    
T  42572776 cctcggtagttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 42572705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 298 - 361
Target Start/End: Complemental strand, 27487678 - 27487614
Alignment:
Q  298 agttaaccgccgaagatttt-tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    ||||||| ||||| ||| || |||||||||| |||||||||||||||||||||||||||||||||    
T  27487678 agttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 27487614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 212 - 304
Target Start/End: Complemental strand, 41804131 - 41804039
Alignment:
Q  212 agtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaac 304  Q
    ||||||||||||||||||| | |   |||||||||| ||| ||||| || |||||||||||||||||| | ||||| |||||| |||||||||    
T  41804131 agtaaaatacgcttttgccccttcggcagttaactgccgaggaattcaaaaaccgactgcagttaactgccgaggaaaacctcggtagttaac 41804039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 318 - 361
Target Start/End: Complemental strand, 26637247 - 26637204
Alignment:
Q  318 tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  26637247 tgctacaaatctggcagaagctctctcatccattattcatctca 26637204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 318 - 361
Target Start/End: Original strand, 44596917 - 44596960
Alignment:
Q  318 tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  44596917 tgctacaaatttggcagaaactctctcatccattattcatctca 44596960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 361
Target Start/End: Original strand, 6434755 - 6434873
Alignment:
Q  244 actgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccgaagatttt-tgctacaaatttggcagaagctctc 342  Q
    |||||||| ||||| || || || ||||||||| || || |||| ||| || ||||||||| ||| | ||| || |||||||||| ||| |||||| |||    
T  6434755 actgtcgatgaattaaaaaatcggctgcagttatctgctaaggaaaacttcggtagttaactgccaaggatcttctgctacaaatctggtagaagcactc 6434854  T
Q  343 tcatccattattcatctca 361  Q
    |||||||||||||||||||    
T  6434855 tcatccattattcatctca 6434873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 268 - 361
Target Start/End: Original strand, 13972093 - 13972187
Alignment:
Q  268 ctgcagttaacttctgaggacaacctcagtagttaaccgccgaagatttt-tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    |||||||||||  | ||||| |||||| ||| | ||| ||||| ||| || |||||||||| ||||||||||||||||||| |||||||||||||    
T  13972093 ctgcagttaacagccgaggaaaacctcggtattaaacagccgaggatcttctgctacaaatctggcagaagctctctcatctattattcatctca 13972187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 212 - 310
Target Start/End: Original strand, 46973179 - 46973276
Alignment:
Q  212 agtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccga 310  Q
    ||||||||||| ||||||| ||||  |||||||||| ||| ||||| || ||||| |||||||||||| | ||||| ||||||| |||||||| |||||    
T  46973179 agtaaaatacgattttgcccccttggcagttaactgccgaggaattcaaaaaccggctgcagttaactgccgaggaaaacctca-tagttaactgccga 46973276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 318 - 359
Target Start/End: Complemental strand, 49927492 - 49927451
Alignment:
Q  318 tgctacaaatttggcagaagctctctcatccattattcatct 359  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  49927492 tgctacaaatctggcagaagctctctcatccattattcatct 49927451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 262 - 361
Target Start/End: Original strand, 13147521 - 13147621
Alignment:
Q  262 aaccgactgcagttaacttctgaggacaacctcagtagttaaccgccgaagatttt-tgctacaaatttggcagaagctctctcatccattattcatctc 360  Q
    |||||||||||||||||| | ||||| ||||||   ||||||| | ||| ||| || |||||||||| ||| | || |||||||||||||||||||||||    
T  13147521 aaccgactgcagttaactaccgaggaaaacctcgacagttaactgtcgatgatcttctgctacaaatctggtaaaaactctctcatccattattcatctc 13147620  T
Q  361 a 361  Q
    |    
T  13147621 a 13147621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 298 - 361
Target Start/End: Complemental strand, 14174923 - 14174859
Alignment:
Q  298 agttaaccgccgaagatttt-tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    ||||||| ||||| ||| || ||||| |||| |||||||||||||||||||||||||||||||||    
T  14174923 agttaactgccgaggatcttctgctaaaaatctggcagaagctctctcatccattattcatctca 14174859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 311
Target Start/End: Complemental strand, 18975218 - 18975119
Alignment:
Q  212 agtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccgaa 311  Q
    ||||||||||| ||||||| |||   | |||||||||||| |||||||||||| |  ||||||||||| | ||||| ||| || ||||||||| ||||||    
T  18975218 agtaaaatacgtttttgccccctcggcggttaactgtcgaggaatttaataactggttgcagttaactgcagaggaaaacttcggtagttaactgccgaa 18975119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 279
Target Start/End: Original strand, 36908553 - 36908620
Alignment:
Q  212 agtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaact 279  Q
    ||||||||||  |||||||||||   |||||||||||||||||||| || ||||| ||||||||||||    
T  36908553 agtaaaatacatttttgcctcctcggcagttaactgtcgaagaattcaaaaaccggctgcagttaact 36908620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 311
Target Start/End: Original strand, 46141757 - 46141856
Alignment:
Q  212 agtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccgaa 311  Q
    ||||||||||| |||||||  ||   |||||||||| ||| ||||| |||||||| |||||||||||| | ||||| ||| || ||||||||| ||||||    
T  46141757 agtaaaatacgattttgccctctcggcagttaactgccgaggaattcaataaccggctgcagttaactgccgaggaaaacatcggtagttaactgccgaa 46141856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 318 - 361
Target Start/End: Original strand, 51269020 - 51269063
Alignment:
Q  318 tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    |||||||||||| |||||||||||||||| ||||||||||||||    
T  51269020 tgctacaaatttagcagaagctctctcattcattattcatctca 51269063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 316
Target Start/End: Original strand, 26633505 - 26633606
Alignment:
Q  212 agtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccgaa 311  Q
    ||||||||||||||||||| |||   | |||||||  ||||||||| || |||||  ||||||||||| | ||||| |||||| ||||||||| ||||||    
T  26633505 agtaaaatacgcttttgccccct---cggttaactaccgaagaattcaaaaaccggttgcagttaactgccgaggaaaacctcggtagttaactgccgaa 26633601  T
Q  312 gattt 316  Q
     ||||    
T  26633602 aattt 26633606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 361
Target Start/End: Complemental strand, 29709352 - 29709259
Alignment:
Q  269 tgcagttaacttctgaggacaacctcagtagttaaccgccgaagat-ttttgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    |||||||||||  |||| | || |||| |||||||| | | ||||| |||||||| |||| | ||||||||||| |||||||||||||||||||    
T  29709352 tgcagttaactgatgagaaaaatctcaatagttaactgtcaaagatcttttgctataaatctagcagaagctctttcatccattattcatctca 29709259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 304
Target Start/End: Complemental strand, 49927615 - 49927519
Alignment:
Q  208 cacgagtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaac 304  Q
    ||||||||||||||| ||||| | |||   |||||||||| |||||||||||| ||||| ||  |||||||| | ||| | |||||| |||||||||    
T  49927615 cacgagtaaaatacgtttttgtcccctcggcagttaactgccgaagaatttaaaaaccggctatagttaactgccgagaaaaacctcggtagttaac 49927519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 311
Target Start/End: Complemental strand, 6437637 - 6437538
Alignment:
Q  212 agtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccgaa 311  Q
    |||||||||||||||||||  ||   |||||||||| ||| ||| | ||||| ||||||||||||||| |  |||| |||||| ||||||| | ||||||    
T  6437637 agtaaaatacgcttttgccctctcggcagttaactgccgaggaagtcaataatcgactgcagttaactaccaaggaaaacctcggtagttatctgccgaa 6437538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 209 - 304
Target Start/End: Original strand, 11183158 - 11183253
Alignment:
Q  209 acgagtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaac 304  Q
    |||||||||||||| ||||||  ||||  ||||||||||  || ||||| || | ||| |||||||||||| | ||||| |||||| |||||||||    
T  11183158 acgagtaaaatacgtttttgctcccttgacagttaactgctgaggaattaaaaatccggctgcagttaactgccgaggaaaacctcggtagttaac 11183253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 19054030 - 19054101
Alignment:
Q  208 cacgagtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaact 279  Q
    ||||||||||||||| ||||||| |||   |||||||||| ||| ||||| || ||||| ||||||||||||    
T  19054030 cacgagtaaaatacgtttttgccccctcgacagttaactgccgaggaattcaaaaaccggctgcagttaact 19054101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 354
Target Start/End: Complemental strand, 24364766 - 24364680
Alignment:
Q  269 tgcagttaacttctgaggacaacctcagtagttaaccgccgaagattt-ttgctacaaatttggcagaagctctctcatccattatt 354  Q
    ||||||||||| ||||||| ||||||   ||||||| ||||| |   | ||||||||||| |||||||||||||| |||||||||||    
T  24364766 tgcagttaactactgaggaaaacctcgacagttaactgccgatgcgctcttgctacaaatctggcagaagctctcacatccattatt 24364680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 331 - 361
Target Start/End: Original strand, 41779774 - 41779804
Alignment:
Q  331 gcagaagctctctcatccattattcatctca 361  Q
    |||||||||||||||||||||||||||||||    
T  41779774 gcagaagctctctcatccattattcatctca 41779804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 312
Target Start/End: Original strand, 52802131 - 52802205
Alignment:
Q  238 cagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccgaag 312  Q
    |||||||||| ||| |||||| | | ||| |||||||||||| | ||||| |||||| ||||||||| |||||||    
T  52802131 cagttaactgccgaggaatttgaaatccggctgcagttaactgccgaggaaaacctcggtagttaactgccgaag 52802205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 347
Target Start/End: Original strand, 49395657 - 49395714
Alignment:
Q  291 cctcagtagttaaccgccgaagatttt-tgctacaaatttggcagaagctctctcatc 347  Q
    |||| ||||||||| ||||| ||| || |||||||||| |||||||||||||||||||    
T  49395657 cctcggtagttaactgccgaggatcttctgctacaaatctggcagaagctctctcatc 49395714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 361
Target Start/End: Original strand, 49426769 - 49426813
Alignment:
Q  318 tgctacaaatttggcagaagctc-tctcatccattattcatctca 361  Q
    |||||||||| |||||||| ||| |||||||||||||||||||||    
T  49426769 tgctacaaatctggcagaatctcctctcatccattattcatctca 49426813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 209 - 359
Target Start/End: Original strand, 41802970 - 41803121
Alignment:
Q  209 acgagtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgcc 308  Q
    |||||||||||||| |||||||  ||   |||||||||| |||||||||||| ||||| |||||||||||| | ||||| |||||| ||||||||| |||    
T  41802970 acgagtaaaatacgtttttgcccactcggcagttaactgccgaagaatttaaaaaccggctgcagttaactgccgaggaaaacctcggtagttaactgcc 41803069  T
Q  309 gaagat-ttttgctacaaatttggcagaagctctctcatccattattcatct 359  Q
    || ||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  41803070 gaggatcttttgctacaaatctggcagaagctctctcatccattattcatct 41803121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 208 - 361
Target Start/End: Complemental strand, 13896978 - 13896824
Alignment:
Q  208 cacgagtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgc 307  Q
    ||||||||||||| | ||||| |||||   ||||||| ||  ||||||||||||||| | ||||||||||||   ||||| |||||| ||||||||| ||    
T  13896978 cacgagtaaaatatgtttttgactcctcggcagttaattgctgaagaatttaataactggctgcagttaactgtcgaggaaaacctcggtagttaactgc 13896879  T
Q  308 cgaagatttt-tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    |||||||||| | |||||||| |||||||||||||||||||||||||||||||||    
T  13896878 cgaagattttctactacaaatctggcagaagctctctcatccattattcatctca 13896824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 208 - 359
Target Start/End: Complemental strand, 55207765 - 55207613
Alignment:
Q  208 cacgagtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgc 307  Q
    |||||||||||||| |||||||| | |   |||||||||| ||||||||| || |||||  ||||||||||| |  ||||||||||  ||||||||| ||    
T  55207765 cacgagtaaaatactcttttgccccatcggcagttaactgccgaagaattcaaaaaccggttgcagttaactgcctaggacaaccttggtagttaactgc 55207666  T
Q  308 cgaagatttt-tgctacaaatttggcagaagctctctcatccattattcatct 359  Q
    ||| ||| || |||||||||| |||||||||||||||||||||||||||||||    
T  55207665 cgaggatcttctgctacaaatctggcagaagctctctcatccattattcatct 55207613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 238 - 361
Target Start/End: Complemental strand, 52570638 - 52570514
Alignment:
Q  238 cagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccgaagat-ttttgctacaaatttggcagaa 336  Q
    |||||||||| ||||||||| || |||||||||||||||||| | ||| | |||||| ||||||||| ||||| ||| || | |||||||| ||||||||    
T  52570638 cagttaactgccgaagaattcaaaaaccgactgcagttaactaccgagaaaaacctcggtagttaactgccgaggatcttctactacaaatctggcagaa 52570539  T
Q  337 gctctctcatccattattcatctca 361  Q
     ||||||||| ||||||||||||||    
T  52570538 actctctcattcattattcatctca 52570514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 268 - 361
Target Start/End: Original strand, 43476223 - 43476317
Alignment:
Q  268 ctgcagttaacttctgaggacaacctcagtagttaaccgccgaagat-ttttgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    |||||||||||| | ||||| |||||| ||||||||| ||||| ||| ||||||||||||| || ||||||||||||||||||||||||||||||    
T  43476223 ctgcagttaactgccgaggaaaacctcggtagttaactgccgaggatcttttgctacaaatctgacagaagctctctcatccattattcatctca 43476317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 208 - 359
Target Start/End: Complemental strand, 51402500 - 51402348
Alignment:
Q  208 cacgagtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgc 307  Q
    ||||||||||||||| |||||| |||| | ||||||| ||  ||| |||| || || ||| || ||||||||   ||||| |||||| ||||||||| ||    
T  51402500 cacgagtaaaatacgtttttgcttcctcagcagttaattgcagaataattcaaaaatcgattgtagttaactgtcgaggaaaacctcggtagttaactgc 51402401  T
Q  308 cgaagatttt-tgctacaaatttggcagaagctctctcatccattattcatct 359  Q
    ||| ||| || |||||||||| || ||||||||||||||||||||||||||||    
T  51402400 cgaggatcttctgctacaaatctgtcagaagctctctcatccattattcatct 51402348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 238 - 361
Target Start/End: Complemental strand, 34694506 - 34694382
Alignment:
Q  238 cagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccgaagatttt-tgctacaaatttggcagaa 336  Q
    |||||||||||||| |||||  | | ||| ||||||| |||| | ||| | |||||| | ||||||| ||||| ||| || |||||||||| ||||||||    
T  34694506 cagttaactgtcgaggaattagaaatccggctgcagtaaactgccgagaaaaacctcgggagttaactgccgaggatcttctgctacaaatctggcagaa 34694407  T
Q  337 gctctctcatccattattcatctca 361  Q
    |||||||||||||||||||||||||    
T  34694406 gctctctcatccattattcatctca 34694382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 268 - 361
Target Start/End: Original strand, 55385168 - 55385262
Alignment:
Q  268 ctgcagttaacttctgaggacaacctcagtagttaaccgccgaagatttt-tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    |||||||||||| | ||||| |||||| ||||||||| | ||| ||| || |||||||||| |||||||||||||||||||||||||| ||||||    
T  55385168 ctgcagttaactgccgaggaaaacctcggtagttaactgtcgaggatcttctgctacaaatctggcagaagctctctcatccattattaatctca 55385262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 208 - 311
Target Start/End: Original strand, 19440227 - 19440330
Alignment:
Q  208 cacgagtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgc 307  Q
    |||||||||||||  ||||||||||||   |||||||||| ||||||||| |  ||||| |||||||||||| | ||||| |||||| ||||||||| ||    
T  19440227 cacgagtaaaataaacttttgcctcctcggcagttaactgccgaagaattcataaaccggctgcagttaactgccgaggaaaacctcggtagttaactgc 19440326  T
Q  308 cgaa 311  Q
    ||||    
T  19440327 cgaa 19440330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 361
Target Start/End: Complemental strand, 49219889 - 49219739
Alignment:
Q  212 agtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccgaa 311  Q
    ||||||||||  |||||||||||    ||||||||| ||| |||||  | | ||| |||||||||||| | ||||| |||||  |||||||||   |||     
T  49219889 agtaaaatacaattttgcctcctcggtagttaactgccgaggaattagaaatccggctgcagttaactgccgaggaaaaccttggtagttaactatcgag 49219790  T
Q  312 gatttt-tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    ||| || ||||||||||||| ||||||||||| ||||||||||||||||||    
T  49219789 gatcttctgctacaaatttgacagaagctctcccatccattattcatctca 49219739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 304
Target Start/End: Complemental strand, 7247962 - 7247866
Alignment:
Q  208 cacgagtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaac 304  Q
    ||||| ||||||||||||||||| |||   |||||||||| ||| ||||| |||||||| ||||||||||||   ||||| |||||| |||||||||    
T  7247962 cacgaataaaatacgcttttgccccctcggcagttaactgccgaggaattcaataaccggctgcagttaactgacgaggaaaacctcggtagttaac 7247866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 361
Target Start/End: Complemental strand, 51696593 - 51696522
Alignment:
Q  291 cctcagtagttaaccgccgaagatttt-tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    |||| ||||||||| ||||| ||| || |||| ||||| |||||||||||||||||||||||||||||||||    
T  51696593 cctcggtagttaactgccgaggatcttctgctgcaaatctggcagaagctctctcatccattattcatctca 51696522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 269 - 350
Target Start/End: Complemental strand, 24703456 - 24703374
Alignment:
Q  269 tgcagttaacttctgaggacaacctcagtagttaaccgccgaagatttt-tgctacaaatttggcagaagctctctcatccat 350  Q
    ||||||||||| | ||||| | |||||| ||||||| ||||| ||| || |||||||||| ||||||||||||||||||||||    
T  24703456 tgcagttaactgccgaggaaatcctcaggagttaactgccgatgatcttctgctacaaatctggcagaagctctctcatccat 24703374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 320 - 361
Target Start/End: Complemental strand, 19454340 - 19454299
Alignment:
Q  320 ctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  19454340 ctacaaatctggcagaagctctctcatccattattcatctca 19454299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 239 - 358
Target Start/End: Complemental strand, 46347791 - 46347672
Alignment:
Q  239 agttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccgaagatttt-tgctacaaatttggcagaag 337  Q
    |||||||||||||| |||| ||||| || |||||||||||| | ||||| ||||||  || ||||| | ||||||| || ||||||||||  || ||||     
T  46347791 agttaactgtcgaa-aattcaataatcggctgcagttaactgccgaggaaaacctcgataattaactgtcgaagatcttctgctacaaatcagggagaaa 46347693  T
Q  338 ctctctcatccattattcatc 358  Q
    |||||||||||||| ||||||    
T  46347692 ctctctcatccattgttcatc 46347672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 318 - 361
Target Start/End: Original strand, 2426566 - 2426609
Alignment:
Q  318 tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||    
T  2426566 tgctataaatttggcagaagctctctcattcattattcatctca 2426609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 361
Target Start/End: Complemental strand, 4004845 - 4004750
Alignment:
Q  268 ctgcagttaacttctgaggacaacctcagtagttaaccgccgaagatttt-tgctacaaatttggcagaagctc-tctcatccattattcatctca 361  Q
    |||||||||||| | ||||| |||||| ||| ||||| ||||| ||| || |||||||||  |||||||| ||| |||||||||||||||||||||    
T  4004845 ctgcagttaactgccgaggaaaacctcggtacttaactgccgaggatcttctgctacaaacctggcagaatctcctctcatccattattcatctca 4004750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 318 - 361
Target Start/End: Original strand, 7245174 - 7245217
Alignment:
Q  318 tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    |||||||||| || ||||||||||||||||||||||||||||||    
T  7245174 tgctacaaatctgacagaagctctctcatccattattcatctca 7245217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 361
Target Start/End: Original strand, 36134354 - 36134449
Alignment:
Q  268 ctgcagttaacttctgaggacaacctcagtagttaaccgccgaagat-ttttgctacaaatttggcagaagct-ctctcatccattattcatctca 361  Q
    |||||||||||| | ||||| |||||| | ||||||| ||||| ||| || |||||||||| |||||||| || |||| |||||||||||||||||    
T  36134354 ctgcagttaactgccgaggaaaacctcgggagttaactgccgaggatcttctgctacaaatctggcagaatctcctcttatccattattcatctca 36134449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 318 - 357
Target Start/End: Original strand, 41137790 - 41137829
Alignment:
Q  318 tgctacaaatttggcagaagctctctcatccattattcat 357  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  41137790 tgctacaaatctggcagaagctctctcatccattattcat 41137829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 45101862 - 45101796
Alignment:
Q  296 gtagttaaccgccgaagatttt-tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    ||||||||| ||||| ||| || |||||||||| ||||||||||||||||||  |||||||||||||    
T  45101862 gtagttaactgccgaggatcttctgctacaaatctggcagaagctctctcatatattattcatctca 45101796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 361
Target Start/End: Complemental strand, 34648182 - 34648150
Alignment:
Q  329 tggcagaagctctctcatccattattcatctca 361  Q
    |||||||||||||||||||||||||||||||||    
T  34648182 tggcagaagctctctcatccattattcatctca 34648150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 361
Target Start/End: Original strand, 41577076 - 41577200
Alignment:
Q  238 cagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccgaagatttt-tgctacaaatttggcagaa 336  Q
    |||||||||||||| ||||| || || ||  |||||||||||   ||  | ||| || ||||| ||| ||||| ||| || |||||||||| | ||||||    
T  41577076 cagttaactgtcgatgaattaaaaaatcggttgcagttaactgtcgacaaaaacttcggtagtaaactgccgaggatcttctgctacaaatcttgcagaa 41577175  T
Q  337 gctctctcatccattattcatctca 361  Q
    ||||||||||||||||| |||||||    
T  41577176 gctctctcatccattatccatctca 41577200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 361
Target Start/End: Original strand, 43568951 - 43568991
Alignment:
Q  321 tacaaatttggcagaagctctctcatccattattcatctca 361  Q
    ||||||| || ||||||||||||||||||||||||||||||    
T  43568951 tacaaatctgacagaagctctctcatccattattcatctca 43568991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 208 - 311
Target Start/End: Complemental strand, 2433045 - 2432942
Alignment:
Q  208 cacgagtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgc 307  Q
    ||||||||||||||||||||  | |||   |||||||||||||| ||||| ||||||||  | |||||||||   ||||| |||||  ||||||||| ||    
T  2433045 cacgagtaaaatacgcttttatcccctcggcagttaactgtcgaggaattcaataaccggatacagttaactgtcgaggaaaaccttggtagttaactgc 2432946  T
Q  308 cgaa 311  Q
    ||||    
T  2432945 cgaa 2432942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 311
Target Start/End: Complemental strand, 41579822 - 41579723
Alignment:
Q  212 agtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccgaa 311  Q
    ||||||||||| |||| || |||   ||||||| ||  || ||||| |||||||| |||||||||||| | ||||| |||||| ||||||||| ||||||    
T  41579822 agtaaaatacgatttttccccctcggcagttaattgctgaggaattcaataaccggctgcagttaactgccgaggaaaacctcggtagttaactgccgaa 41579723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 211 - 294
Target Start/End: Original strand, 42756133 - 42756216
Alignment:
Q  211 gagtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctc 294  Q
    |||||||||||| ||||||| ||| | |||||||||||||| ||||| || | |||  ||||||||||| | ||||| ||||||    
T  42756133 gagtaaaatacgtttttgccccctcagcagttaactgtcgaggaattaaaaatccggttgcagttaactgccgaggaaaacctc 42756216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 311
Target Start/End: Complemental strand, 1294125 - 1294076
Alignment:
Q  262 aaccgactgcagttaacttctgaggacaacctcagtagttaaccgccgaa 311  Q
    |||||||||||||||||||| ||||| |||||| | ||||||| ||||||    
T  1294125 aaccgactgcagttaacttccgaggaaaacctcggcagttaactgccgaa 1294076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 361
Target Start/End: Complemental strand, 2271385 - 2271260
Alignment:
Q  238 cagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccgaagatttt-tgctacaaatttggcagaa 336  Q
    ||||||||||||||||  ||  | | ||| |||||||||||| | ||||  | |||| | ||||||| ||||| ||| || |||||||||| ||||||||    
T  2271385 cagttaactgtcgaagttttagaaatccggctgcagttaactgccgagggaatcctcgggagttaactgccgaggatcttctgctacaaatctggcagaa 2271286  T
Q  337 gctc-tctcatccattattcatctca 361  Q
     ||| |||||||||| ||||||||||    
T  2271285 tctcctctcatccataattcatctca 2271260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 303
Target Start/End: Complemental strand, 41805747 - 41805682
Alignment:
Q  238 cagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaa 303  Q
    |||||||||||||||||||||||  |||| ||||| |||||| | ||||| |||||| | ||||||    
T  41805747 cagttaactgtcgaagaatttaaagaccggctgcaattaactgccgaggaaaacctcgggagttaa 41805682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 303
Target Start/End: Original strand, 46344938 - 46345003
Alignment:
Q  238 cagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaa 303  Q
    |||||||||||||| ||||| || || || |||||||||||| | ||||| |||||| ||||||||    
T  46344938 cagttaactgtcgaggaattcaaaaatcggctgcagttaactgccgaggaaaacctcggtagttaa 46345003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 361
Target Start/End: Original strand, 49609435 - 49609508
Alignment:
Q  289 aacctcagtagttaaccgccgaagatttt-tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    |||||| ||||||||| ||||| ||  || |||||||||| ||||| ||||||||| || ||||||||||||||    
T  49609435 aacctcggtagttaactgccgaggaacttctgctacaaatctggcataagctctcttattcattattcatctca 49609508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 310
Target Start/End: Complemental strand, 13747790 - 13747719
Alignment:
Q  238 cagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccga 310  Q
    |||||||||| ||| |||||| | | ||| |||||||||||| ||||||| |||||| ||||||||| |||||    
T  13747790 cagttaactgccgatgaatttgaaatccggctgcagttaactgctgaggaaaacctc-gtagttaactgccga 13747719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 7e-31; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 208 - 359
Target Start/End: Complemental strand, 30355341 - 30355189
Alignment:
Q  208 cacgagtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgc 307  Q
    ||||||||||||||||||||||| |||   ||||||| ||  |||||||| || || || |||||||||||| | ||||| |||||| ||||||||| ||    
T  30355341 cacgagtaaaatacgcttttgccccctcggcagttaattgctgaagaattcaaaaatcggctgcagttaactgccgaggaaaacctcggtagttaactgc 30355242  T
Q  308 cgaagat-ttttgctacaaatttggcagaagctctctcatccattattcatct 359  Q
    ||| ||| || |||||||||| |||||||||||||||||||||||||||||||    
T  30355241 cgaggatcttctgctacaaatctggcagaagctctctcatccattattcatct 30355189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 208 - 358
Target Start/End: Complemental strand, 28980275 - 28980123
Alignment:
Q  208 cacgagtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctga-ggacaacctcagtagttaaccg 306  Q
    ||||||||||||||| ||||||| ||| | |||||| ||| ||||||||| |||| |||  ||||||||||| | || ||| |||||| ||||||||| |    
T  28980275 cacgagtaaaatacgtttttgccccctcagcagttagctgccgaagaattcaatatccggatgcagttaactgccgaaggaaaacctcggtagttaactg 28980176  T
Q  307 ccgaagatttt-tgctacaaatttggcagaagctctctcatccattattcatc 358  Q
    |||| |||||| |||||||||| || |||||||||||||||||||||||||||    
T  28980175 ccgaggattttctgctacaaatctgacagaagctctctcatccattattcatc 28980123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 212 - 361
Target Start/End: Complemental strand, 46863442 - 46863292
Alignment:
Q  212 agtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccgaa 311  Q
    ||||||||||| ||||||| | |   |||||||||| |||  |||| || ||||| |||||||||||| |  | || || ||| ||||||||| ||||||    
T  46863442 agtaaaatacgtttttgccccatcggcagttaactgccgagaaattgaaaaaccggctgcagttaactgcgaacgaaaatctctgtagttaactgccgaa 46863343  T
Q  312 gatttt-tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    ||| || |||||||||| ||||||||||||| |||||||||||||||||||    
T  46863342 gatcttctgctacaaatctggcagaagctctttcatccattattcatctca 46863292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 239 - 361
Target Start/End: Original strand, 41047779 - 41047902
Alignment:
Q  239 agttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccgaagatttt-tgctacaaatttggcagaag 337  Q
    |||||||||  |||||||||||||| ||  || |||||||| | ||||| ||| || ||||||||| ||||| ||| || |||||||||| |||  ||||    
T  41047779 agttaactgcagaagaatttaataatcgggtgtagttaactgccgaggaaaacttcggtagttaactgccgaggatcttctgctacaaatctggaggaag 41047878  T
Q  338 ctctctcatccattattcatctca 361  Q
    ||||||||||||||||||||||||    
T  41047879 ctctctcatccattattcatctca 41047902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 264 - 361
Target Start/End: Original strand, 40587688 - 40587786
Alignment:
Q  264 ccgactgcagttaacttctgaggacaacctcagtagttaaccgccgaagatttt-tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    ||||||||||||||||   ||||| |||||||||||||||| ||||| ||| || ||||| |||| ||  |||||||||||||||||||||||||||||    
T  40587688 ccgactgcagttaactgtcgaggaaaacctcagtagttaactgccgaggatcttatgctataaatctgaaagaagctctctcatccattattcatctca 40587786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 238 - 361
Target Start/End: Complemental strand, 36395010 - 36394886
Alignment:
Q  238 cagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccgaagatttt-tgctacaaatttggcagaa 336  Q
    ||||||| || ||||||||| |  ||||||||||| |||| | | ||||| |||||| |||||||||  |||| ||| || |||||||||| ||||||||    
T  36395010 cagttaattgccgaagaattcacaaaccgactgcaattaagtgccgaggaaaacctcggtagttaactaccgaggatcttctgctacaaatctggcagaa 36394911  T
Q  337 gctctctcatccattattcatctca 361  Q
    |||||||||||| ||||| ||||||    
T  36394910 gctctctcatccgttattaatctca 36394886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 316
Target Start/End: Original strand, 46860486 - 46860590
Alignment:
Q  212 agtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccgaa 311  Q
    ||||||||||||||||||| |||   |||||||||||||| ||||| || ||||||||||||||||||  |||||  |||||| | ||||||| ||||||    
T  46860486 agtaaaatacgcttttgccccctcggcagttaactgtcgaggaattgaaaaaccgactgcagttaactattgaggcaaacctcggcagttaactgccgaa 46860585  T
Q  312 gattt 316  Q
     ||||    
T  46860586 aattt 46860590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 298 - 361
Target Start/End: Complemental strand, 21188438 - 21188374
Alignment:
Q  298 agttaaccgccgaagatttt-tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    ||||||| ||||| ||| || |||||||||| |||||||||||||||||||||||||||||||||    
T  21188438 agttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 21188374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 268 - 361
Target Start/End: Original strand, 42682025 - 42682119
Alignment:
Q  268 ctgcagttaacttctgaggacaacctcagtagttaaccgccgaagatttt-tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    |||||||||||| | ||||| |||||| ||| ||||| ||||| ||| || |||||||||| | ||| ||| |||||||||||||||||||||||    
T  42682025 ctgcagttaactgccgaggaaaacctcggtaattaactgccgaggatcttctgctacaaatctagcataagttctctcatccattattcatctca 42682119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 239 - 303
Target Start/End: Complemental strand, 41049260 - 41049196
Alignment:
Q  239 agttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaa 303  Q
    ||||||||||||||||||| ||||| || |||||||||||| | ||||| |||||| ||||||||    
T  41049260 agttaactgtcgaagaattcaataatcggctgcagttaactgccgaggaaaacctcggtagttaa 41049196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 361
Target Start/End: Original strand, 17838681 - 17838776
Alignment:
Q  268 ctgcagttaacttctgaggacaacctcagtagttaaccgccgaagatttt-tgctacaaatttggcagaagctc-tctcatccattattcatctca 361  Q
    ||||||| |||| | ||||| ||||||  |||||||| ||||| ||| || |||||||||| |||||||| ||| |||||||||||||||||||||    
T  17838681 ctgcagtaaactaccgaggaaaacctcgatagttaactgccgacgatcttctgctacaaatctggcagaatctcctctcatccattattcatctca 17838776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 279
Target Start/End: Original strand, 21185594 - 21185661
Alignment:
Q  212 agtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaact 279  Q
    ||||||||||| |||||||||||   |||||||||| ||||||||| |||||||| ||| ||||||||    
T  21185594 agtaaaatacgattttgcctcctcggcagttaactgccgaagaattcaataaccggctgtagttaact 21185661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 357
Target Start/End: Complemental strand, 43686925 - 43686859
Alignment:
Q  292 ctcagtagttaaccgccgaagatttt-tgctacaaatttggcagaagctctctcatccattattcat 357  Q
    ||||||||||||| |||||  ||||| |||||||||| || || |||||||||||||||||||||||    
T  43686925 ctcagtagttaactgccgagaattttctgctacaaatctgacataagctctctcatccattattcat 43686859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 320 - 361
Target Start/End: Original strand, 34139955 - 34139996
Alignment:
Q  320 ctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    |||||||| ||||||||||||||| |||||||||||||||||    
T  34139955 ctacaaatctggcagaagctctcttatccattattcatctca 34139996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 318 - 361
Target Start/End: Complemental strand, 28115523 - 28115480
Alignment:
Q  318 tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    |||||||||| | ||| |||||||||||||||||||||||||||    
T  28115523 tgctacaaatctagcataagctctctcatccattattcatctca 28115480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 310
Target Start/End: Original strand, 47060902 - 47060999
Alignment:
Q  212 agtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccga 310  Q
    ||||||||||| ||||||| |||   |||||||||||||| ||||| || || || ||| |||||||| | ||||| |||||| ||||||||| |||||    
T  47060902 agtaaaatacgtttttgccccctcggcagttaactgtcgaggaattcaa-aatcggctgtagttaactgccgaggaaaacctcggtagttaactgccga 47060999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 310
Target Start/End: Original strand, 37340303 - 37340375
Alignment:
Q  238 cagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccga 310  Q
    |||||||||||||| ||||| || |||||  ||||||||||| | ||| | |||||| ||||||||| |||||    
T  37340303 cagttaactgtcgaggaattcaaaaaccggttgcagttaactgccgagaaaaacctcggtagttaactgccga 37340375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 310
Target Start/End: Original strand, 42499410 - 42499482
Alignment:
Q  238 cagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccga 310  Q
    ||||||| || ||| |||||| | | |||||||||||||||| | ||||| |||||| ||||||||| |||||    
T  42499410 cagttaattgccgaggaatttgaaatccgactgcagttaactgccgaggaaaacctcggtagttaactgccga 42499482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 359
Target Start/End: Complemental strand, 48316295 - 48316259
Alignment:
Q  323 caaatttggcagaagctctctcatccattattcatct 359  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  48316295 caaatctggcagaagctctctcatccattattaatct 48316259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 208 - 359
Target Start/End: Complemental strand, 41500336 - 41500184
Alignment:
Q  208 cacgagtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgc 307  Q
    ||||||||||||||||||||||| |||   ||||||||| || ||||||| || | ||| |||||||||||| | ||| | |||||| ||||||||| ||    
T  41500336 cacgagtaaaatacgcttttgccccctcggcagttaactatcaaagaattcaaaatccggctgcagttaactgccgagaaaaacctcggtagttaactgc 41500237  T
Q  308 cgaagat-ttttgctacaaatttggcagaagctctctcatccattattcatct 359  Q
    ||| ||| || |||||||||| ||||| |||||||||||||||||||||||||    
T  41500236 cgaggatcttctgctacaaatctggcataagctctctcatccattattcatct 41500184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 208 - 361
Target Start/End: Original strand, 43491080 - 43491234
Alignment:
Q  208 cacgagtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgc 307  Q
    |||||||||||||  |||||| || |||| |||||||||| ||| |||||||||||||| ||||| ||||||   ||||| |||||  ||||||||| ||    
T  43491080 cacgagtaaaatatacttttgtcttcttaacagttaactgccgaggaatttaataaccggctgcaattaactgtcgaggaaaaccttggtagttaactgc 43491179  T
Q  308 cgaagat-ttttgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    |||  || || || || |||| |||||||||||||||||||||||||||||||||    
T  43491180 cgagaatcttctgttataaatctggcagaagctctctcatccattattcatctca 43491234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 212 - 361
Target Start/End: Original strand, 24512142 - 24512292
Alignment:
Q  212 agtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccgaa 311  Q
    ||||||||||| |||| || |||   ||||||||||| || ||||| || ||||  |||||||||| | | ||  | |||||| ||||||||| |||||     
T  24512142 agtaaaatacgtttttaccccctcgacagttaactgttgaggaattaaaaaaccagctgcagttaattgccgaaaaaaacctcggtagttaactgccgag 24512241  T
Q  312 gatttt-tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    ||| || |||||||||| |||||||||||||||||||||||||||||||||    
T  24512242 gatcttctgctacaaatctggcagaagctctctcatccattattcatctca 24512292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 288 - 361
Target Start/End: Complemental strand, 2920538 - 2920464
Alignment:
Q  288 caacctcagtagttaaccgccgaagatttt-tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    ||||||| ||||||||| ||||| ||| || |||||||||| |||||||||||||||||||||||||||||||||    
T  2920538 caacctcggtagttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 2920464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 208 - 310
Target Start/End: Complemental strand, 25184931 - 25184830
Alignment:
Q  208 cacgagtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgc 307  Q
    ||||||||||||||| ||||||| ||| | |||||||||||||| |||||| | ||||| |||||||||||| | ||||| |||||| ||||||||| ||    
T  25184931 cacgagtaaaatacgtttttgccccctcagcagttaactgtcgaggaatttga-aaccggctgcagttaactgccgaggaaaacctcggtagttaactgc 25184833  T
Q  308 cga 310  Q
    |||    
T  25184832 cga 25184830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 259 - 355
Target Start/End: Complemental strand, 10365843 - 10365746
Alignment:
Q  259 aataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccgaagat-ttttgctacaaatttggcagaagctctctcatccattattc 355  Q
    |||||||| ||| |||||||| | ||||| |||||  ||||||||  ||||| ||| ||||||||||||| ||||| |||||||||||||||||||||    
T  10365843 aataaccggctgtagttaactgccgaggaaaaccttggtagttaaatgccgaggatcttttgctacaaatctggcataagctctctcatccattattc 10365746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 208 - 361
Target Start/End: Original strand, 2648088 - 2648242
Alignment:
Q  208 cacgagtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgc 307  Q
    ||||||||||||||| |||| ||  ||   ||||||  |||||| ||||| |||||| |  || |||||||| | ||||| || ||| ||||||||  ||    
T  2648088 cacgagtaaaatacgttttttccgtctcgacagttacttgtcgaggaattcaataactgtatgtagttaactgccgaggaaaatctcggtagttaattgc 2648187  T
Q  308 cgaagatttt-tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    ||| ||| || |||||||||| |||||||| |||||||||| |||||||||||||    
T  2648188 cgatgatcttctgctacaaatctggcagaaactctctcatcaattattcatctca 2648242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 208 - 310
Target Start/End: Original strand, 35490651 - 35490753
Alignment:
Q  208 cacgagtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgc 307  Q
    ||||||||||||||  |||||||||||   | |||||||| ||||||||| || ||||| |||||||||||| |||| || |||||  ||||||||| ||    
T  35490651 cacgagtaaaatacatttttgcctcctcgacggttaactgccgaagaattcaaaaaccggctgcagttaactgctgaagaaaaccttggtagttaactgc 35490750  T
Q  308 cga 310  Q
    |||    
T  35490751 cga 35490753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 214 - 310
Target Start/End: Original strand, 43943666 - 43943762
Alignment:
Q  214 taaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccga 310  Q
    ||||||||| |||| || ||| | ||||||||| |||| |||||||||||||| ||||||||||||   ||||| || ||| ||||||||| |||||    
T  43943666 taaaatacgatttttccccctcagcagttaactctcgaggaatttaataaccggctgcagttaactgtcgaggaaaaactcggtagttaactgccga 43943762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 310
Target Start/End: Complemental strand, 34921860 - 34921759
Alignment:
Q  208 cacgagtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgc 307  Q
    ||||||||||||||| ||||||| ||   | ||||||||| |||  |||| || ||||| |||||||||||| ||||||| |||||| ||||||||| ||    
T  34921860 cacgagtaaaatacgtttttgccccccggt-agttaactgccgagaaattcaaaaaccggctgcagttaactgctgaggaaaacctcggtagttaactgc 34921762  T
Q  308 cga 310  Q
    |||    
T  34921761 cga 34921759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 304
Target Start/End: Original strand, 2917658 - 2917750
Alignment:
Q  212 agtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaac 304  Q
    ||||||||||| ||||||| |||   |||||||||| |||  |||| || ||||| || ||||||||| | ||||| ||||||||||||||||    
T  2917658 agtaaaatacgtttttgccccctcggcagttaactgccgagaaattgaaaaaccggctacagttaactgccgaggaaaacctcagtagttaac 2917750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 316
Target Start/End: Complemental strand, 35493443 - 35493335
Alignment:
Q  208 cacgagtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgc 307  Q
    ||||||||||||||||||||||| |||    ||||||||| ||| ||||| || ||||  |||||||||||| | ||||| ||  || ||||||||| ||    
T  35493443 cacgagtaaaatacgcttttgccccctcggtagttaactgccgaggaattcaaaaaccagctgcagttaactgccgaggaaaatatcggtagttaactgc 35493344  T
Q  308 cgaagattt 316  Q
    |||| ||||    
T  35493343 cgaaaattt 35493335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 318 - 361
Target Start/End: Original strand, 16580568 - 16580611
Alignment:
Q  318 tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    |||||||||| ||||| ||| |||||||||||||||||||||||    
T  16580568 tgctacaaatctggcaaaagttctctcatccattattcatctca 16580611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 318 - 361
Target Start/End: Complemental strand, 40679588 - 40679545
Alignment:
Q  318 tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    |||||||||| ||| |||| ||||||||||||||||||||||||    
T  40679588 tgctacaaatctggaagaacctctctcatccattattcatctca 40679545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 361
Target Start/End: Complemental strand, 29093872 - 29093779
Alignment:
Q  266 gactgcagttaacttctgaggacaacctcagtagttaaccgccgaagatttt-tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    |||||||||||| | | ||||| |||||  | ||||||| ||||| ||| || |||||||||| |||||||||||||||||   |||||||||||||    
T  29093872 gactgcagttaattgccgaggaaaaccttggcagttaactgccgaggatcttctgctacaaatctggcagaagctctctca---attattcatctca 29093779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 311
Target Start/End: Complemental strand, 26544037 - 26543988
Alignment:
Q  262 aaccgactgcagttaacttctgaggacaacctcagtagttaaccgccgaa 311  Q
    ||||| |||||||||||| ||||||| |||||| ||||||||| ||||||    
T  26544037 aaccggctgcagttaactactgaggaaaacctcggtagttaactgccgaa 26543988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 361
Target Start/End: Original strand, 39393121 - 39393162
Alignment:
Q  320 ctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    |||||||| ||  |||||||||||||||||||||||||||||    
T  39393121 ctacaaatctgatagaagctctctcatccattattcatctca 39393162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 310
Target Start/End: Complemental strand, 41183292 - 41183224
Alignment:
Q  241 ttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccga 310  Q
    ||||||| |||||||||| | ||||| |||||||||||| | ||||| |||||| ||||||||| |||||    
T  41183292 ttaactgccgaagaatttga-aaccggctgcagttaactaccgaggaaaacctcggtagttaactgccga 41183224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 361
Target Start/End: Original strand, 34638234 - 34638262
Alignment:
Q  333 agaagctctctcatccattattcatctca 361  Q
    |||||||||||||||||||||||||||||    
T  34638234 agaagctctctcatccattattcatctca 34638262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 304
Target Start/End: Original strand, 45475415 - 45475507
Alignment:
Q  212 agtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaac 304  Q
    ||||||||||| ||||||| |||   |||||||||| |||  |||| || ||||| || ||||||||| | ||||| |||||| |||||||||    
T  45475415 agtaaaatacgattttgccccctcggcagttaactgccgagaaattcaaaaaccggctacagttaactgccgaggaaaacctcggtagttaac 45475507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 212 - 361
Target Start/End: Complemental strand, 12784055 - 12783905
Alignment:
Q  212 agtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccgaa 311  Q
    ||||||||||||||||||| | |   |||||||||| ||| ||||| |||||||| ||||||||| ||   ||||| |||||||||||||||| |||||     
T  12784055 agtaaaatacgcttttgccccatcggcagttaactgccgatgaattcaataaccggctgcagttagctgtcgaggaaaacctcagtagttaactgccgag 12783956  T
Q  312 gat-ttttgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    ||| || |||||||||| ||| | |||||||||||||||||||||||||||    
T  12783955 gatcttctgctacaaatctggaaaaagctctctcatccattattcatctca 12783905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 208 - 361
Target Start/End: Original strand, 13401457 - 13401611
Alignment:
Q  208 cacgagtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgc 307  Q
    ||||||| ||||| ||||||||| |||   |||||||||| ||| ||||| || || || |||||||||||| || |||| ||  |  |||||||||  |    
T  13401457 cacgagttaaatatgcttttgccccctcggcagttaactgccgaggaattaaaaaatcggctgcagttaactgctaaggaaaatattggtagttaactac 13401556  T
Q  308 cgaagatttt-tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    ||| ||| || |||||||||| || ||||||||||||||||||||||||||||||    
T  13401557 cgaggatcttctgctacaaatatgacagaagctctctcatccattattcatctca 13401611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 318 - 361
Target Start/End: Original strand, 29061352 - 29061395
Alignment:
Q  318 tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    |||||||||| ||| |||||||||||||||||||||||||||||    
T  29061352 tgctacaaatctggtagaagctctctcatccattattcatctca 29061395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 318 - 361
Target Start/End: Original strand, 29065810 - 29065853
Alignment:
Q  318 tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    |||||||||| |||| ||||||||||||||||||||||||||||    
T  29065810 tgctacaaatctggcggaagctctctcatccattattcatctca 29065853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 318 - 361
Target Start/End: Original strand, 29074823 - 29074866
Alignment:
Q  318 tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    |||||||||| |||| ||||||||||||||||||||||||||||    
T  29074823 tgctacaaatctggcggaagctctctcatccattattcatctca 29074866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 318 - 361
Target Start/End: Original strand, 29079587 - 29079630
Alignment:
Q  318 tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    |||||||||| |||| ||||||||||||||||||||||||||||    
T  29079587 tgctacaaatctggcggaagctctctcatccattattcatctca 29079630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 318 - 361
Target Start/End: Original strand, 29107396 - 29107439
Alignment:
Q  318 tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    |||||||||| |||| ||||||||||||||||||||||||||||    
T  29107396 tgctacaaatctggcggaagctctctcatccattattcatctca 29107439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 26855977 - 26856013
Alignment:
Q  318 tgctacaaatttggcagaagctctctcatccattatt 354  Q
    |||||||||| ||||||||||||||||||||||||||    
T  26855977 tgctacaaatctggcagaagctctctcatccattatt 26856013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 311
Target Start/End: Complemental strand, 13404730 - 13404631
Alignment:
Q  212 agtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccgaa 311  Q
    |||||||||||| |||||| |||    ||||||||||||| ||||| |||||||  |||||||||||| | | ||| |||||  ||||||||| ||||||    
T  13404730 agtaaaatacgcgtttgccccctcggtagttaactgtcgaggaattcaataacctgctgcagttaactgccgtggaaaaccttggtagttaactgccgaa 13404631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 318 - 361
Target Start/End: Complemental strand, 17596807 - 17596764
Alignment:
Q  318 tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    ||||| |||| ||||||||||| |||||||||||||||||||||    
T  17596807 tgctataaatctggcagaagctatctcatccattattcatctca 17596764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 310
Target Start/End: Complemental strand, 29076395 - 29076323
Alignment:
Q  238 cagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccga 310  Q
    ||||||||||||||||  ||  | | ||| |||||||||||| ||||||| |||||| ||||||||| |||||    
T  29076395 cagttaactgtcgaagttttagaaatccggctgcagttaactgctgaggaaaacctcggtagttaactgccga 29076323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 310
Target Start/End: Complemental strand, 29109928 - 29109856
Alignment:
Q  238 cagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccga 310  Q
    ||||||||||||||||  ||  | | ||| |||||||||||| ||||||| |||||| ||||||||| |||||    
T  29109928 cagttaactgtcgaagttttagaaatccggctgcagttaactgctgaggaaaacctcggtagttaactgccga 29109856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 310
Target Start/End: Complemental strand, 29111368 - 29111296
Alignment:
Q  238 cagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccga 310  Q
    ||||||||||||||||  ||  | | ||| |||||||||||| ||||||| |||||| ||||||||| |||||    
T  29111368 cagttaactgtcgaagttttagaaatccggctgcagttaactgctgaggaaaacctcggtagttaactgccga 29111296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 361
Target Start/End: Complemental strand, 32034404 - 32034340
Alignment:
Q  298 agttaaccgccgaagatttt-tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    ||||||| ||||| ||| || |||||||||| ||||||||| ||||| ||||||||||| |||||    
T  32034404 agttaactgccgatgatcttctgctacaaatctggcagaagatctcttatccattattcgtctca 32034340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 208 - 359
Target Start/End: Complemental strand, 41858223 - 41858073
Alignment:
Q  208 cacgagtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgc 307  Q
    ||||||||||||||| ||||||| |||   |||||||||| ||||||||| || ||||| |||||||||||| | |||||  ||||| | ||||||| |     
T  41858223 cacgagtaaaatacgtttttgccccctcggcagttaactggcgaagaattcaaaaaccggctgcagttaactgccgagga--acctcgggagttaactgt 41858126  T
Q  308 cgaagatttt-tgctacaaatttggcagaagctctctcatccattattcatct 359  Q
    ||| ||| || |||||||||| |||||||||||||||||||||||||||||||    
T  41858125 cgaggatcttctgctacaaatctggcagaagctctctcatccattattcatct 41858073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 212 - 361
Target Start/End: Complemental strand, 18441539 - 18441389
Alignment:
Q  212 agtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccgaa 311  Q
    ||||||||||| ||||||| |||   |||||||||| |||  |||| ||||||||| || |||||||| | ||| | |||||| | ||||||| |||||     
T  18441539 agtaaaatacgtttttgccccctcggcagttaactgccgagaaattcaataaccgattgtagttaactgccgagaaaaacctcggcagttaactgccgag 18441440  T
Q  312 gatttt-tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    ||| || |||||||||| |||||||| ||||||||||||||||||||||||    
T  18441439 gatcttctgctacaaatctggcagaaactctctcatccattattcatctca 18441389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 211 - 304
Target Start/End: Original strand, 41855342 - 41855435
Alignment:
Q  211 gagtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaac 304  Q
    |||||||||||| |||||||||||   |||||||||||||||||||| || || || |||||||||||| | ||||| |||||| |||||||||    
T  41855342 gagtaaaatacgtttttgcctcctcggcagttaactgtcgaagaattcaaaaatcggctgcagttaactgccgaggaaaacctcggtagttaac 41855435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 272 - 357
Target Start/End: Original strand, 26451515 - 26451601
Alignment:
Q  272 agttaacttctgaggacaacctcagtagttaaccgccgaagatttt-tgctacaaatttggcagaagctctctcatccattattcat 357  Q
    |||||||| | ||||| |||||| ||||||||| ||||| ||| || |||||||||| ||||||||||||||||||| |||||||||    
T  26451515 agttaactgccgaggaaaacctcggtagttaactgccgaggatcttctgctacaaatctggcagaagctctctcatctattattcat 26451601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 359
Target Start/End: Original strand, 42602461 - 42602583
Alignment:
Q  238 cagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccgaagat-ttttgctacaaatttggcagaa 336  Q
    |||||||||| ||||||||| || |||||  ||||||||||| | ||||| |||||| ||||||||| ||||| ||| || || ||||||| || || ||    
T  42602461 cagttaactgccgaagaattcaaaaaccggatgcagttaactgccgaggaaaacctcggtagttaactgccgaggatcttctgatacaaatctgacataa 42602560  T
Q  337 gctctctcatccattattcatct 359  Q
    | | |||||||||||||||||||    
T  42602561 gttgtctcatccattattcatct 42602583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 311
Target Start/End: Original strand, 18438609 - 18438708
Alignment:
Q  212 agtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccgaa 311  Q
    ||||||||||||||||||| | |   ||||||||||| || ||||| |||||||| |||||||||||| | ||||| |||||| | ||||||| ||||||    
T  18438609 agtaaaatacgcttttgccccttcggcagttaactgttgaggaattcaataaccggctgcagttaactgccgaggaaaacctcgggagttaactgccgaa 18438708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 298 - 361
Target Start/End: Original strand, 3395927 - 3395991
Alignment:
Q  298 agttaaccgccgaagatttt-tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    ||||||| ||||| ||| || |||||||||| |||||||| ||||||||||||||||||||||||    
T  3395927 agttaactgccgaggatcttctgctacaaatatggcagaaactctctcatccattattcatctca 3395991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 310
Target Start/End: Original strand, 18205757 - 18205859
Alignment:
Q  208 cacgagtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgc 307  Q
    ||||||||||||||| |||| || |||   | |||||||| ||||||||| || ||||| |||||||||||| |  |||| |||||| ||||||||| ||    
T  18205757 cacgagtaaaatacgtttttaccacctcggcggttaactgccgaagaattcaaaaaccggctgcagttaactgccaaggaaaacctcggtagttaactgc 18205856  T
Q  308 cga 310  Q
    |||    
T  18205857 cga 18205859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 310
Target Start/End: Complemental strand, 40077352 - 40077250
Alignment:
Q  208 cacgagtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgc 307  Q
    ||||||||||||||| ||||||| ||| | | || ||||||| | | ||| || | |||||||||||||||| | ||||| |||||| ||||||||| ||    
T  40077352 cacgagtaaaatacgtttttgccccctcaacggtaaactgtcaaggtattaaaaatccgactgcagttaactgccgaggaaaacctcggtagttaactgc 40077253  T
Q  308 cga 310  Q
    |||    
T  40077252 cga 40077250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 320 - 361
Target Start/End: Original strand, 22547527 - 22547568
Alignment:
Q  320 ctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    |||||||| ||||||||||||||||||| |||||||||||||    
T  22547527 ctacaaatctggcagaagctctctcatcaattattcatctca 22547568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 324 - 361
Target Start/End: Original strand, 41274680 - 41274717
Alignment:
Q  324 aaatttggcagaagctctctcatccattattcatctca 361  Q
    |||| |||||||||||||||||||||||||||||||||    
T  41274680 aaatctggcagaagctctctcatccattattcatctca 41274717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 318 - 361
Target Start/End: Original strand, 24860464 - 24860507
Alignment:
Q  318 tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    ||||| ||||||| |||||||||||||||| |||||||||||||    
T  24860464 tgctataaatttgacagaagctctctcatctattattcatctca 24860507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 294
Target Start/End: Original strand, 39751045 - 39751130
Alignment:
Q  208 cacgagtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctc 294  Q
    ||||||||||||||| ||||||| ||||  || ||||||| ||| |||||| | ||||| |||||||||||| | ||||| ||||||    
T  39751045 cacgagtaaaatacgtttttgcccccttggcaattaactgccgatgaatttga-aaccggctgcagttaactgccgaggaaaacctc 39751130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 301
Target Start/End: Original strand, 7168063 - 7168152
Alignment:
Q  212 agtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagtt 301  Q
    ||||||||||| ||||||| |||   | |||| ||| ||||||||| || ||||| |||||||||||| | ||||| |||||| ||||||    
T  7168063 agtaaaatacgattttgccccctcgactgttagctgccgaagaattcaaaaaccggctgcagttaactgccgaggaaaacctcggtagtt 7168152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 311
Target Start/End: Complemental strand, 42605306 - 42605233
Alignment:
Q  238 cagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccgaa 311  Q
    |||||||||||||||||||| || || || |||||||||||| | || || ||| || ||||||||| ||||||    
T  42605306 cagttaactgtcgaagaattcaaaaatcggctgcagttaactgccgatgaaaacatcggtagttaactgccgaa 42605233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 209 - 361
Target Start/End: Original strand, 18307226 - 18307379
Alignment:
Q  209 acgagtaaaatacgcttttgcctccttat-cagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgc 307  Q
    |||||||||||||| |||||| |||||   |||||||||||||| ||||| || || || ||| |||||||| | ||||| |||||| ||||||||| ||    
T  18307226 acgagtaaaatacgtttttgc-tccttcggcagttaactgtcgaggaattaaaaaatcggctgtagttaactgccgaggaaaacctcggtagttaactgc 18307324  T
Q  308 cgaagatttt-tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    ||| ||| || |||||||||| |||||||||| ||||||||||||||||||||||    
T  18307325 cgaggatcttctgctacaaatctggcagaagccctctcatccattattcatctca 18307379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 18310119 - 18310052
Alignment:
Q  212 agtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaact 279  Q
    ||||||||||| ||||||||||| | |||||||||||||| ||||| |||||||||||||||||||||    
T  18310119 agtaaaatacgtttttgcctcctcagcagttaactgtcgaggaattcaataaccgactgcagttaact 18310052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 238 - 361
Target Start/End: Complemental strand, 542862 - 542738
Alignment:
Q  238 cagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccgaagatttt-tgctacaaatttggcagaa 336  Q
    |||||||||||||| |||||  | | ||| |||||| ||||| | ||||| |  ||| ||||||||| ||||| ||| || |||||||||| ||||||||    
T  542862 cagttaactgtcgaggaattagaaatccggctgcagctaactgccgaggaaactctcggtagttaactgccgaggatcttctgctacaaatctggcagaa 542763  T
Q  337 gctctctcatccattattcatctca 361  Q
    | |||||||||||||||||||||||    
T  542762 gttctctcatccattattcatctca 542738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 347
Target Start/End: Original strand, 20192328 - 20192464
Alignment:
Q  212 agtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccgaa 311  Q
    ||||||||||| ||||||| | |  |||||||||||  |||||||| ||||| || |||||||||||| | ||||| ||| ||  |||||||  |||||     
T  20192328 agtaaaatacgattttgccccttcgtcagttaactgctgaagaattcaataatcggctgcagttaactgccgaggaaaacttcgatagttaaatgccgag 20192427  T
Q  312 gat-ttttgctacaaatttggcagaagctctctcatc 347  Q
    ||| || |||||||||| |||||||||||||||||||    
T  20192428 gatcttctgctacaaatctggcagaagctctctcatc 20192464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 212 - 311
Target Start/End: Complemental strand, 3603246 - 3603147
Alignment:
Q  212 agtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccgaa 311  Q
    ||||||||||| ||||||  |||   |||||||||| ||||||||| |||||| | |||||||||||||| ||||| |||||| ||||||||| ||||||    
T  3603246 agtaaaatacgtttttgctccctcgacagttaactgccgaagaattcaataactggctgcagttaacttccgaggaaaacctcggtagttaactgccgaa 3603147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 268 - 361
Target Start/End: Original strand, 25497542 - 25497636
Alignment:
Q  268 ctgcagttaacttctgaggacaacctcagtagttaaccgccgaagatttt-tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    |||||||||||| | ||||| || ||| ||||||||| |||||  || || ||||||||||  ||||||||||||||||||||||||||||||||    
T  25497542 ctgcagttaactgccgaggaaaatctcggtagttaactgccgagaatcttctgctacaaatcaggcagaagctctctcatccattattcatctca 25497636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 212 - 304
Target Start/End: Original strand, 34682232 - 34682324
Alignment:
Q  212 agtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaac 304  Q
    ||||||||||||||||||  ||||  |||||||||||||| ||||| || ||||| |||||||||||| | ||||| |||||| | |||||||    
T  34682232 agtaaaatacgcttttgctcccttgacagttaactgtcgaggaattcaaaaaccggctgcagttaactgccgaggaaaacctcgggagttaac 34682324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 361
Target Start/End: Original strand, 3600311 - 3600462
Alignment:
Q  212 agtaaaatacgcttttgcctccttatcagttaactgtcgaagaatt-taataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccga 310  Q
    ||||||||| | ||||||| |||   |||||||||| |||| |||| ||||||||  |||||||||||| |  |||| ||||||  |||||||| |||||    
T  3600311 agtaaaatatgtttttgccccctcggcagttaactgccgaataattataataaccagctgcagttaactgccaaggaaaacctcgatagttaacagccga 3600410  T
Q  311 agatttt-tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
     ||| || |||||||||| || |||||| ||| |||| ||||||||||||||    
T  3600411 ggatcttctgctacaaatctgacagaagttctttcatgcattattcatctca 3600462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 268 - 361
Target Start/End: Original strand, 11346038 - 11346133
Alignment:
Q  268 ctgcagttaacttctgaggacaacctcagtagttaaccgccgaagatttt-tgctacaaatttggcagaagctc-tctcatccattattcatctca 361  Q
    |||||||||||| | ||||| |||||| ||||||||| | ||| ||| || |||||||||| |||||||| ||| |||||||||||||||||||||    
T  11346038 ctgcagttaactgccgaggaaaacctcggtagttaactgtcgaggatcttctgctacaaatctggcagaatctcctctcatccattattcatctca 11346133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 318 - 359
Target Start/End: Complemental strand, 42865795 - 42865754
Alignment:
Q  318 tgctacaaatttggcagaagctctctcatccattattcatct 359  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  42865795 tgctacaaatctggcagaagctctctcatccattattcatct 42865754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 310
Target Start/End: Complemental strand, 18538433 - 18538335
Alignment:
Q  212 agtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccga 310  Q
    ||||||||||| ||||||| |||   ||||||| |||||| ||||| || ||||| |||||||||||| | ||||| ||| || ||||||||| |||||    
T  18538433 agtaaaatacgattttgccccctcggcagttaattgtcgaggaattcaaaaaccggctgcagttaactgccgaggaaaacttcggtagttaactgccga 18538335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 361
Target Start/End: Complemental strand, 1401428 - 1401388
Alignment:
Q  321 tacaaatttggcagaagctctctcatccattattcatctca 361  Q
    ||||||| | |||||||||||||||||||||||||||||||    
T  1401428 tacaaatctagcagaagctctctcatccattattcatctca 1401388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 304
Target Start/End: Complemental strand, 8702296 - 8702204
Alignment:
Q  212 agtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaac 304  Q
    ||||||||||| ||||||  |||   |||||||||| ||| ||||| || | | |||||||||||||| ||||||| |||||| |||||||||    
T  8702296 agtaaaatacgattttgctccctcgacagttaactgccgaggaattaaaaatctgactgcagttaactgctgaggaaaacctcggtagttaac 8702204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 316
Target Start/End: Complemental strand, 25499985 - 25499881
Alignment:
Q  212 agtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccgaa 311  Q
    ||||||||||||||||||| |||   ||||||||| |||| ||||| || |||||  ||| ||||||| | ||||| ||||| |||||||||  ||||||    
T  25499985 agtaaaatacgcttttgccccctcggcagttaactatcgaggaattcaaaaaccggttgcggttaactgccgaggaaaaccttagtagttaagtgccgaa 25499886  T
Q  312 gattt 316  Q
     ||||    
T  25499885 aattt 25499881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 304
Target Start/End: Original strand, 41201699 - 41201795
Alignment:
Q  208 cacgagtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaac 304  Q
    ||||||||||||||| ||||| |  ||   || |||| |||||| ||||| |||||||| |||||||||||| | ||||| |||||| |||||||||    
T  41201699 cacgagtaaaatacgattttgtcctctcgacaattaattgtcgaggaattcaataaccggctgcagttaactgccgaggaaaacctcggtagttaac 41201795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 318 - 361
Target Start/End: Original strand, 35564343 - 35564386
Alignment:
Q  318 tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    |||||||||| ||||| |||||||||||||||||||||| ||||    
T  35564343 tgctacaaatctggcataagctctctcatccattattcacctca 35564386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 310
Target Start/End: Complemental strand, 34124033 - 34123935
Alignment:
Q  212 agtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccga 310  Q
    ||||||||||| ||||||| |||   ||||||||||||||  ||||| | | ||| |||||||||||| |  |||| |||||| ||||||||| |||||    
T  34124033 agtaaaatacgattttgccccctcggcagttaactgtcgagaaatttgaaatccggctgcagttaactgccaaggaaaacctcggtagttaactgccga 34123935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 311
Target Start/End: Complemental strand, 20200220 - 20200147
Alignment:
Q  238 cagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccgaa 311  Q
    |||||||||||| |  |||| ||||||| ||||||||||||| | ||||| ||| || ||||||||| ||||||    
T  20200220 cagttaactgtcaagaaattcaataaccaactgcagttaactgccgaggaaaacatctgtagttaactgccgaa 20200147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 268 - 361
Target Start/End: Original strand, 56138283 - 56138377
Alignment:
Q  268 ctgcagttaacttctgaggacaacctcagtagttaaccgccgaagatttt-tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    |||||||||||| | ||||| |||||||||||||||| ||||| ||| || |||||||||| |||||||||||||||||||||||||||||||||    
T  56138283 ctgcagttaactgccgaggaaaacctcagtagttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 56138377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 212 - 343
Target Start/End: Complemental strand, 29700400 - 29700268
Alignment:
Q  212 agtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccgaa 311  Q
    ||||||||||||||||| |||||   ||||||||||  || ||||| |||||||| |||||||||||| | ||||| |||||| ||||||||  |||||     
T  29700400 agtaaaatacgcttttgtctcctcgacagttaactgctgaggaattcaataaccggctgcagttaactgccgaggaaaacctcggtagttaattgccgat 29700301  T
Q  312 gat-ttttgctacaaatttggcagaagctctct 343  Q
    ||| || |||||||||| |||||||||||||||    
T  29700300 gatcttctgctacaaatctggcagaagctctct 29700268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 238 - 361
Target Start/End: Complemental strand, 958665 - 958542
Alignment:
Q  238 cagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccgaagatttt-tgctacaaatttggcagaa 336  Q
    |||||||||| ||| ||||| || |||||  ||||||||||| | ||||| |||||| ||||||||| ||||| ||| || ||||||||||  |||||||    
T  958665 cagttaactg-cgatgaattcaaaaaccggttgcagttaactgccgaggaaaacctcggtagttaactgccgaggatcttctgctacaaatccggcagaa 958567  T
Q  337 gctctctcatccattattcatctca 361  Q
    ||||||||||||||||||| |||||    
T  958566 gctctctcatccattattcttctca 958542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 262 - 361
Target Start/End: Complemental strand, 44561378 - 44561278
Alignment:
Q  262 aaccgactgcagttaacttctgaggacaacctcagtagttaaccgccgaagatttt-tgctacaaatttggcagaagctctctcatccattattcatctc 360  Q
    ||||| |||||||||||| | ||||| || ||| ||||||||| ||||| |||  | |||||||||| ||||||||||||||||||||||||||||||||    
T  44561378 aaccggctgcagttaactaccgaggaaaatctcggtagttaactgccgaggatcgtctgctacaaatctggcagaagctctctcatccattattcatctc 44561279  T
Q  361 a 361  Q
    |    
T  44561278 a 44561278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 298 - 361
Target Start/End: Complemental strand, 34530807 - 34530743
Alignment:
Q  298 agttaaccgccgaagatttt-tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    ||||||| ||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  34530807 agttaactgccgaggatcttctgctacaaatttggcagaagctctctcatccattattcatctca 34530743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 298 - 361
Target Start/End: Original strand, 39588127 - 39588191
Alignment:
Q  298 agttaaccgccgaagatttt-tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    ||||||| ||||| ||| || |||||||||| |||||||||||||||||||||||||||||||||    
T  39588127 agttaactgccgaggatcttctgctacaaatatggcagaagctctctcatccattattcatctca 39588191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 306 - 361
Target Start/End: Original strand, 56304919 - 56304975
Alignment:
Q  306 gccgaagatttt-tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    ||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  56304919 gccgaggattttctgctacaaatctggcagaagctctctcatccattattcatctca 56304975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 311
Target Start/End: Complemental strand, 37959822 - 37959719
Alignment:
Q  208 cacgagtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgc 307  Q
    ||||||||||||||| |||| || |||   ||||||||||| || |||||||||||||  |||||||||||| | ||||| ||| || ||||||||| ||    
T  37959822 cacgagtaaaatacgtttttaccccctcggcagttaactgttgaggaatttaataaccagctgcagttaactgccgaggaaaacatcggtagttaactgc 37959723  T
Q  308 cgaa 311  Q
    ||||    
T  37959722 cgaa 37959719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 361
Target Start/End: Original strand, 42885484 - 42885576
Alignment:
Q  272 agttaacttctgaggacaacctcagtagttaaccgccgaagatttt-tgctacaaa--tttggcagaagctctctcatccattattcatctca 361  Q
    |||||| | ||||||| |||||| | ||||||| ||||| ||| || |||||||||  | |||||||||||||||||||||||||||||||||    
T  42885484 agttaattactgaggaaaacctcggcagttaactgccgatgatcttctgctacaaaaatctggcagaagctctctcatccattattcatctca 42885576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 268 - 347
Target Start/End: Complemental strand, 4786376 - 4786296
Alignment:
Q  268 ctgcagttaacttctgaggacaacctcagtagttaaccgccgaagat-ttttgctacaaatttggcagaagctctctcatc 347  Q
    |||||||||||| ||||||| |||||| || |||||| ||||| ||| || |||||||||| ||| |||||||||||||||    
T  4786376 ctgcagttaactactgaggaaaacctcggttgttaactgccgatgatcttctgctacaaatctggtagaagctctctcatc 4786296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 311
Target Start/End: Original strand, 11494515 - 11494617
Alignment:
Q  208 cacgagtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgc 307  Q
    ||||||||||||||| ||||| | |||   || ||||||||||| ||||| || ||||| |||||||||||| | ||||| |||||| ||||||||| ||    
T  11494515 cacgagtaaaatacgtttttgtcccctcggcaattaactgtcgaggaattcaa-aaccggctgcagttaactgccgaggaaaacctcggtagttaactgc 11494613  T
Q  308 cgaa 311  Q
    ||||    
T  11494614 cgaa 11494617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 318 - 361
Target Start/End: Complemental strand, 34154419 - 34154376
Alignment:
Q  318 tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    |||||||||| ||||||||||||||||||| |||||||||||||    
T  34154419 tgctacaaatctggcagaagctctctcatctattattcatctca 34154376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 318 - 361
Target Start/End: Complemental strand, 51429320 - 51429277
Alignment:
Q  318 tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    |||||||||| ||| |||||||||||||||||||||||||||||    
T  51429320 tgctacaaatctggaagaagctctctcatccattattcatctca 51429277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 304
Target Start/End: Original strand, 6280858 - 6280924
Alignment:
Q  238 cagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaac 304  Q
    |||||||||||| |||||||||| ||||| |||||||||| | ||||||| ||| || |||||||||    
T  6280858 cagttaactgtcaaagaatttaaaaaccggctgcagttaaatactgaggaaaacatcggtagttaac 6280924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 316
Target Start/End: Original strand, 955767 - 955871
Alignment:
Q  212 agtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccgaa 311  Q
    ||||||||||| ||||||||| ||  ||||||||||  || ||||| || || || |||||||||||| | ||| | |||||| ||||||||| ||||||    
T  955767 agtaaaatacgtttttgcctctttggcagttaactgctgaggaattcaaaaatcggctgcagttaactgccgagaaaaacctcggtagttaactgccgaa 955866  T
Q  312 gattt 316  Q
     ||||    
T  955867 aattt 955871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 357
Target Start/End: Original strand, 1041936 - 1042056
Alignment:
Q  238 cagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccgaagatttt-tgctacaaatttggcagaa 336  Q
    |||||||||| ||| |||||  | | |||||||||||||||| | ||| | || ||| ||||||||| ||||| ||| || | |||||||| ||||| ||    
T  1041936 cagttaactgccgaggaattagaaatccgactgcagttaactgccgagaaaaatctcggtagttaactgccgaggatcttctactacaaatctggcataa 1042035  T
Q  337 gctctctcatccattattcat 357  Q
    |||||||||| |||| |||||    
T  1042036 gctctctcattcattgttcat 1042056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 304
Target Start/End: Original strand, 8109362 - 8109458
Alignment:
Q  208 cacgagtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaac 304  Q
    ||||||||||||||| |||| || ||||   ||||||||||||| ||||| |||| ||| || ||||||||| | ||||| |||||| | |||||||    
T  8109362 cacgagtaaaatacgattttacccccttggtagttaactgtcgaggaattaaatatccggctacagttaactgccgaggaaaacctcgggagttaac 8109458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 11287557 - 11287593
Alignment:
Q  318 tgctacaaatttggcagaagctctctcatccattatt 354  Q
    |||||||||| ||||||||||||||||||||||||||    
T  11287557 tgctacaaatgtggcagaagctctctcatccattatt 11287593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 311
Target Start/End: Original strand, 33383807 - 33383879
Alignment:
Q  239 agttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccgaa 311  Q
    |||||| |||||| || ||||| |||||||||||||||||| | ||||| |||||| | ||||||| ||||||    
T  33383807 agttaattgtcgaggattttaaaaaccgactgcagttaactgccgaggaaaacctcggaagttaactgccgaa 33383879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 310
Target Start/End: Original strand, 41023363 - 41023459
Alignment:
Q  214 taaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccga 310  Q
    ||||||||| |||| |||||||  |||||||||| |||  ||||| | | ||| |||||||||||| ||||||| | |||| ||||||||| |||||    
T  41023363 taaaatacgattttacctccttggcagttaactgccgagaaatttgaaatccggctgcagttaactgctgaggaaatcctcggtagttaactgccga 41023459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 300
Target Start/End: Complemental strand, 49572998 - 49572910
Alignment:
Q  212 agtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagt 300  Q
    ||||||||||| ||||||| | |   |||||||||||||| ||||| ||||| || |||||||||||| | ||||| |||||| |||||    
T  49572998 agtaaaatacgtttttgccccatcgacagttaactgtcgaggaattcaataatcggctgcagttaactgccgaggaaaacctcggtagt 49572910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 359
Target Start/End: Complemental strand, 6283479 - 6283417
Alignment:
Q  298 agttaaccgccgaagatttt-tgctacaaatttggcagaagctctctcatccattattcatct 359  Q
    ||||||| ||||| ||| || |||| ||||| |||| ||||||||||||||||||||||||||    
T  6283479 agttaactgccgaggatcttctgcttcaaatctggccgaagctctctcatccattattcatct 6283417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 310
Target Start/End: Original strand, 9889969 - 9890067
Alignment:
Q  212 agtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccga 310  Q
    ||||||||||| |||| || |||   |||||||||| ||| |||||| | | ||| |||||||||||| | ||||| |||||| ||||||||| |||||    
T  9889969 agtaaaatacgattttaccccctcggcagttaactgccgaggaatttgaaatccggctgcagttaactgccgaggaaaacctcggtagttaactgccga 9890067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 310
Target Start/End: Original strand, 21470878 - 21470976
Alignment:
Q  212 agtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccga 310  Q
    ||||||||||| ||||| || ||   |||||||||||||| | ||| || ||| |||||||||||||  | ||||| |||||| ||||||||| |||||    
T  21470878 agtaaaatacgtttttgtcttctcggcagttaactgtcgaggtattcaaaaactgactgcagttaaccgcagaggaaaacctcggtagttaactgccga 21470976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 316
Target Start/End: Original strand, 51426538 - 51426616
Alignment:
Q  238 cagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccgaagattt 316  Q
    |||||||||||||| ||||| || || || |||||||||| | | ||| | |||||||||||||||| |||||| ||||    
T  51426538 cagttaactgtcgaggaattcaaaaatcggctgcagttaattgccgagaaaaacctcagtagttaactgccgaaaattt 51426616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 354
Target Start/End: Original strand, 23949961 - 23949994
Alignment:
Q  321 tacaaatttggcagaagctctctcatccattatt 354  Q
    |||||||||| |||||||||||||||||||||||    
T  23949961 tacaaatttgacagaagctctctcatccattatt 23949994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 359
Target Start/End: Original strand, 28081485 - 28081582
Alignment:
Q  264 ccgactgcagttaacttctgaggacaacctcagtagttaaccgccgaagatttt-tgctacaaatttggcagaagctc-tctcatccattattcatct 359  Q
    |||||||||||||||| | ||||| || |||  |||||||  | ||| ||| || |||||||||| |||||||| ||| |||||||||||||||||||    
T  28081485 ccgactgcagttaactgccgaggaaaatctcgttagttaagtgtcgaggatcttctgctacaaatctggcagaatctcctctcatccattattcatct 28081582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 276
Target Start/End: Original strand, 18578624 - 18578688
Alignment:
Q  212 agtaaaatacgcttttgcctccttatcagttaactgtcgaagaatttaataaccgactgcagtta 276  Q
    ||||||||||  ||||||||||||  |||||||||||||| ||||| || || || |||||||||    
T  18578624 agtaaaatacatttttgcctccttggcagttaactgtcgaggaattcaaaaaacggctgcagtta 18578688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 21538539 - 21538495
Alignment:
Q  260 ataaccgactgcagttaacttctgaggacaacctcagtagttaac 304  Q
    |||||||||||||||||||| ||||||| ||| |||| |||||||    
T  21538539 ataaccgactgcagttaactactgaggaaaacttcagcagttaac 21538495  T

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Target: scaffold0199 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 268 - 361
Target Start/End: Complemental strand, 12430 - 12335
Alignment:
Q  268 ctgcagttaacttctgaggacaacctcagtagttaaccgccgaagatttt-tgctacaaatttggcagaagct-ctctcatccattattcatctca 361  Q
    |||||||||||| | || || |||||| ||||||||| ||||| ||| || |||||||||| |||||||| || ||||||||||||||||||||||    
T  12430 ctgcagttaactgccgatgaaaacctcggtagttaactgccgaggatcttctgctacaaatctggcagaatctactctcatccattattcatctca 12335  T

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Target: scaffold0192 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 318 - 361
Target Start/End: Complemental strand, 18890 - 18847
Alignment:
Q  318 tgctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    |||||||||| ||||||||||| |||||||||||||||||||||    
T  18890 tgctacaaatctggcagaagctttctcatccattattcatctca 18847  T

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Target: scaffold0176 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 320 - 361
Target Start/End: Original strand, 880 - 921
Alignment:
Q  320 ctacaaatttggcagaagctctctcatccattattcatctca 361  Q
    |||||||| ||||||||||||||| |||||||||||||||||    
T  880 ctacaaatctggcagaagctctcttatccattattcatctca 921  T

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Target: scaffold0794 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0794
Description:

Target: scaffold0794; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 310
Target Start/End: Original strand, 5276 - 5344
Alignment:
Q  241 ttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaaccgccga 310  Q
    ||||||| |||||||||| | ||||| |||||||||||| | ||||| |||||| ||||||||| |||||    
T  5276 ttaactgccgaagaatttga-aaccggctgcagttaactaccgaggaaaacctcggtagttaactgccga 5344  T

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Target: scaffold0618 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 303
Target Start/End: Original strand, 3886 - 3951
Alignment:
Q  238 cagttaactgtcgaagaatttaataaccgactgcagttaacttctgaggacaacctcagtagttaa 303  Q
    |||||||||||||| ||||| || || || |||||||||||| | ||||| |||||| ||||||||    
T  3886 cagttaactgtcgaggaattcaaaaatcggctgcagttaactgccgaggaaaacctcggtagttaa 3951  T

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