View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13121_low_3 (Length: 352)
Name: NF13121_low_3
Description: NF13121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13121_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 11 - 334
Target Start/End: Original strand, 52092912 - 52093235
Alignment:
| Q |
11 |
aatgagtaattttacaacatcttaaaacttcaacaataccttcggatatgcaatagcaatggcaatatctcattctcaggtcaagcccctgcaggtttgg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52092912 |
aatgagtaattttacaacatcttaaaacttcaacaataccttcggatatgcaatagcaatggcaatatctcattctcaggtcaagcccctgcaggtttgg |
52093011 |
T |
|
| Q |
111 |
gaaaagagaaggcaacattttgatgctttcatttttcaaccgtggattgcctgccaaatggagagacttcacttgagggtatacaacaaagtccatcaaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52093012 |
gaaaagagaaggcaacattttgatgctttcatttttcaaccgtggattgcctgccaaatggagagacttcacttgagggtatacaacaaagtccatcaaa |
52093111 |
T |
|
| Q |
211 |
caattacaattcttatcacaaaactttccaataccacttctgatctcgctgaggaaaggacagttcctaactagtgacaccaaggttaattcagtgatat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52093112 |
caattacaattcttatcacaaaactttccaataccacttctgatctcgctgaggaaaggacagttcctaactagtgacaccaaggttaattcagtgatat |
52093211 |
T |
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| Q |
311 |
tggtacaagggctaaggtttatag |
334 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
52093212 |
tggtacaagggctaaggtttatag |
52093235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 17 - 334
Target Start/End: Original strand, 52082722 - 52083039
Alignment:
| Q |
17 |
taattttacaacatcttaaaacttcaacaataccttcggatatgcaatagcaatggcaatatctcattctcaggtcaagcccctgcaggtttgggaaaag |
116 |
Q |
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||||||||||| |||||||||||||||| ||||| || ||||||||||||||||||||||||||| ||||||||| | |||| |||||| ||||| |
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| T |
52082722 |
taattttacaatatcttaaaacttcaacgataccgtcagatatgcaatagcaatggcaatatctc------aggtcaagcacttgcaagtttggaaaaag |
52082815 |
T |
|
| Q |
117 |
agaaggcaacattttgatgctttcatttttcaaccgtggattgcctgccaaatggagagacttcacttgagggtatacaacaaagtccatcaaacaatta |
216 |
Q |
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||||| ||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
52082816 |
agaagccaacattttgatgctttcattcttcaacaatggattgcgagccaaatggagagacttcacttgagggtatacaacaaagtccagcaaagaatta |
52082915 |
T |
|
| Q |
217 |
caattcttatcacaaaactttccaataccac---------ttctgatctcgctgaggaaaggacagttcctaactagtgacaccaaggttaattcagtga |
307 |
Q |
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| |||||||||||||||||||||||| ||| || |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
52082916 |
gagttcttatcacaaaactttccaatatcactgcattccattatgatcttgctgaggaaaggacagttcctaactagtgacagcaaggttaattcagtga |
52083015 |
T |
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| Q |
308 |
tattggtacaagggctaaggtttatag |
334 |
Q |
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||| ||||| ||||||||||||||| |
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| T |
52083016 |
tat---tacaatggctaaggtttatag |
52083039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 1754623 - 1754670
Alignment:
| Q |
16 |
gtaattttacaacatcttaaaacttcaacaataccttcggatatgcaa |
63 |
Q |
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| T |
1754623 |
gtaattttagaacatcttaaaacttcaacgatacctttagatatgcaa |
1754670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 547194 - 547254
Alignment:
| Q |
163 |
gccaaatggagagacttcacttgagggtatacaacaaagtccatcaaacaattacaattct |
223 |
Q |
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||||||||||||||||||| ||||||| ||||||||| ||| | ||| ||||| |||||| |
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| T |
547194 |
gccaaatggagagacttcaattgagggcttacaacaaaatccttgaaagaattagaattct |
547254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 196
Target Start/End: Complemental strand, 27005615 - 27005557
Alignment:
| Q |
138 |
ttcatttttcaaccgtggattgcctgccaaatggagagacttcacttgagggtatacaa |
196 |
Q |
| |
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||||| |||||| ||||||||| | ||||||| |||||||||||||||| |||||||| |
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| T |
27005615 |
ttcatctttcaaacgtggattgtcagccaaatagagagacttcacttgattgtatacaa |
27005557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 197
Target Start/End: Original strand, 33396786 - 33396820
Alignment:
| Q |
163 |
gccaaatggagagacttcacttgagggtatacaac |
197 |
Q |
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|||||||||||||||||||||||| |||||||||| |
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| T |
33396786 |
gccaaatggagagacttcacttgatggtatacaac |
33396820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 197
Target Start/End: Complemental strand, 33708838 - 33708804
Alignment:
| Q |
163 |
gccaaatggagagacttcacttgagggtatacaac |
197 |
Q |
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|||||||||||||||||||||||| |||||||||| |
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| T |
33708838 |
gccaaatggagagacttcacttgatggtatacaac |
33708804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 197
Target Start/End: Complemental strand, 37580641 - 37580607
Alignment:
| Q |
163 |
gccaaatggagagacttcacttgagggtatacaac |
197 |
Q |
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|
|||||||||||||||||||||||| |||||||||| |
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| T |
37580641 |
gccaaatggagagacttcacttgatggtatacaac |
37580607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 196
Target Start/End: Complemental strand, 33093748 - 33093715
Alignment:
| Q |
163 |
gccaaatggagagacttcacttgagggtatacaa |
196 |
Q |
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|||||||||||||||||||||||| ||||||||| |
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| T |
33093748 |
gccaaatggagagacttcacttgacggtatacaa |
33093715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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