View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13121_low_4 (Length: 270)
Name: NF13121_low_4
Description: NF13121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13121_low_4 |
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| [»] scaffold0038 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 30 - 212
Target Start/End: Original strand, 9830885 - 9831067
Alignment:
| Q |
30 |
taaacataattatttttattactttaataaataactacgaagaagatataaacaatatttcgtaaattcattctcaggttttaggaaaaatacactcatg |
129 |
Q |
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| T |
9830885 |
taaacataattatttttattactttaataaataactacgaagaagatataaacaatatttcgtaaattcattctcaggttttaggaaaaatacactcatg |
9830984 |
T |
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| Q |
130 |
attgttcgttttccatattgcaagataaaagtaataaaagaatgttcatattaaatttgaccacataacttttcaattataat |
212 |
Q |
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| T |
9830985 |
attgttcgtttttcatattgcaagataaaagtaataaaagaatgttcatattaaatttgaccacataacttttcaattataat |
9831067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 141
Target Start/End: Complemental strand, 28116368 - 28116260
Alignment:
| Q |
33 |
acataattatttttattactttaataaataactacgaagaagatataaacaatatttcgtaaattcattctcaggttttaggaaaaatacactcatgatt |
132 |
Q |
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| T |
28116368 |
acataattattttcattacattaataacaaactactaagaagatataaacaatattttgtaaattcatgcttaggttttagcagaaacacactcgtgctt |
28116269 |
T |
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| Q |
133 |
gttcgtttt |
141 |
Q |
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|||| |||| |
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| T |
28116268 |
gttcttttt |
28116260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 141
Target Start/End: Complemental strand, 28200163 - 28200055
Alignment:
| Q |
31 |
aaacataattatttttattactttaataaataactacgaagaagatataaacaatatttcgtaaattcattctcaggttttaggaaaaatacactcatga |
130 |
Q |
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| T |
28200163 |
aaacataattattttcattacattaataaaaaactacaaagaagatataaacaatatt--gtatattcatgcttaggttttagcataaacgcactcatga |
28200066 |
T |
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| Q |
131 |
ttgttcgtttt |
141 |
Q |
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| T |
28200065 |
tttttcttttt |
28200055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 141
Target Start/End: Complemental strand, 661 - 553
Alignment:
| Q |
31 |
aaacataattatttttattactttaataaataactacgaagaagatataaacaatatttcgtaaattcattctcaggttttaggaaaaatacactcatga |
130 |
Q |
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||||||||||||||| ||||| |||||||| |||||| |||||||||||||||||||| ||| |||||| || ||||||||| | ||| ||||||||| |
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| T |
661 |
aaacataattattttcattacattaataaaaaactacaaagaagatataaacaatatt--gtatattcatgcttaggttttagcataaacgcactcatga |
564 |
T |
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| Q |
131 |
ttgttcgtttt |
141 |
Q |
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|| ||| |||| |
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| T |
563 |
tttttcttttt |
553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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