View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13121_low_6 (Length: 250)
Name: NF13121_low_6
Description: NF13121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13121_low_6 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 6360793 - 6360559
Alignment:
| Q |
12 |
atgaagaaacacacattttctagtgttttggttccaagtccctttggttgtcttattttgtcatggtcattgaagattgctgaaactactactacattgt |
111 |
Q |
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| T |
6360793 |
atgaagaaacacacattttctagtgttttgattccaagtccctttggttgtcttattttgtcatggtcattgaagattgctgaaactactactactttgt |
6360694 |
T |
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| Q |
112 |
cacacttttccatggccattctatctgcatcaaaatacaaacaaacaagcaaattacaatcctaaacaagcaaatttcattgaataacaattttccatat |
211 |
Q |
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| T |
6360693 |
cacatttttccatggccattctatctgcatcaaaatacaa----acaagcaaattacaatcctaaacaagcaaatttcattgaataacaattttccatat |
6360598 |
T |
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| Q |
212 |
cnnnnnnncttaaattcggggttttaagaaaaggtatgt |
250 |
Q |
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| T |
6360597 |
caaaaaaacttaaattcggggttttaagaaaaggtatgt |
6360559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 13033959 - 13034011
Alignment:
| Q |
24 |
acattttctagtgttttggttccaagtccctttggttgtcttattttgtcatg |
76 |
Q |
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| T |
13033959 |
acattttctagtgttttgggtccatgtacatttggttatcttattttgtcatg |
13034011 |
T |
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