View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13121_low_7 (Length: 244)
Name: NF13121_low_7
Description: NF13121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13121_low_7 |
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| [»] scaffold0208 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 31022893 - 31022971
Alignment:
| Q |
23 |
aaaaattcaattcaagcaaagaatctaatggtcaaaccatgagcaattgacaattaactcaagttaaatatttcagtac |
101 |
Q |
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| T |
31022893 |
aaaaattcaattcaagcaaagaatctaatggtcaaaccatgagcaattgacaattaactcaagttaaatatttcagtac |
31022971 |
T |
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Target: chr6; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 24 - 123
Target Start/End: Original strand, 31032783 - 31032883
Alignment:
| Q |
24 |
aaaattcaattcaagcaaagaatctaatggtcaaaccatgagcaattgacaattaactcaagttaaatatttcagta-ctctttaatttcttaacagttg |
122 |
Q |
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| T |
31032783 |
aaaattcaattcaagcaaagaatgtaatggtcgaaccatgagcaattgacaattaactcaagttaaatattttagtacctctttaatttcttgacagttg |
31032882 |
T |
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| Q |
123 |
a |
123 |
Q |
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| T |
31032883 |
a |
31032883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0208 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0208
Description:
Target: scaffold0208; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 3335 - 3298
Alignment:
| Q |
23 |
aaaaattcaattcaagcaaagaatctaatggtcaaacc |
60 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
3335 |
aaaaattcaattcaagcaaagaatctaatggtcaaacc |
3298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 18430228 - 18430148
Alignment:
| Q |
24 |
aaaattcaattcaagcaaagaatctaat-ggtcaaaccatgagc--aattgacaattaactcaagttaaatatttcagtac |
101 |
Q |
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|||||| ||||||| ||| ||||||||| || ||||||||||| ||||||||||||||||||| |||| ||||||||| |
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| T |
18430228 |
aaaatttaattcaaacaatgaatctaattggccaaaccatgagagtaattgacaattaactcaagccaaatgtttcagtac |
18430148 |
T |
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