View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13122_high_14 (Length: 238)

Name: NF13122_high_14
Description: NF13122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13122_high_14
NF13122_high_14
[»] chr4 (4 HSPs)
chr4 (1-223)||(54396679-54396901)
chr4 (1-121)||(23587525-23587645)
chr4 (3-121)||(23596377-23596495)
chr4 (47-121)||(35132750-35132824)
[»] chr7 (16 HSPs)
chr7 (1-121)||(8102923-8103043)
chr7 (51-121)||(7877525-7877595)
chr7 (1-121)||(39985902-39986022)
chr7 (1-121)||(8590894-8591014)
chr7 (1-121)||(8602230-8602350)
chr7 (47-127)||(10494160-10494240)
chr7 (47-118)||(17260543-17260614)
chr7 (51-112)||(8382677-8382738)
chr7 (52-124)||(8017202-8017274)
chr7 (47-127)||(13333242-13333322)
chr7 (75-118)||(6789842-6789885)
chr7 (47-121)||(3147574-3147648)
chr7 (51-121)||(8636135-8636205)
chr7 (78-124)||(8659696-8659742)
chr7 (78-127)||(1301797-1301846)
chr7 (78-118)||(8585501-8585541)
[»] chr2 (5 HSPs)
chr2 (52-128)||(12234996-12235072)
chr2 (54-121)||(12245198-12245265)
chr2 (3-121)||(17716485-17716603)
chr2 (75-124)||(7542556-7542605)
chr2 (51-121)||(16657309-16657379)
[»] chr1 (1 HSPs)
chr1 (51-124)||(4678347-4678420)


Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 54396679 - 54396901
Alignment:
Q  1 cagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396679 cagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcagg 54396778  T
Q  101 aacagtaacaacagcattcttcactggatgaccaagaaaagcttcagcaacttctctcatcttgatcaacaccattgaagaaatttcctctgctgcaaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396779 aacagtaacaacagcattcttcactggatgaccaagaaaagcttcagcaacttctctcatcttgatcaacaccattgaagaaatttcctctgctgcaaat 54396878  T
Q  201 ttcttctcttcacctttgtaatt 223  Q
    |||||||||||||||||||||||    
T  54396879 ttcttctcttcacctttgtaatt 54396901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 23587645 - 23587525
Alignment:
Q  1 cagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcagg 100  Q
    ||||||| ||||| ||||||||||| ||||||||||| |  || |||||  |||| |||||||| |||||||||||||| ||||| ||||| ||||||||    
T  23587645 cagcagcggtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacgttgtgaatcgttgaagtaagcagg 23587546  T
Q  101 aacagtaacaacagcattctt 121  Q
     ||||| ||||| ||||||||    
T  23587545 cacagttacaacggcattctt 23587525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 121
Target Start/End: Complemental strand, 23596495 - 23596377
Alignment:
Q  3 gcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaa 102  Q
    |||||||| ||||| |||||||| |||| |||||| |  || |||||  |||||||||| || |||||||||||||| ||||| ||||| || ||||| |    
T  23596495 gcagcagtgggctcgttaataattctcatcacattgagtccagaaatgacaccagcatccttagtagcttgacgttgtgaatcgttgaagtatgcaggca 23596396  T
Q  103 cagtaacaacagcattctt 121  Q
    | || ||||| ||||||||    
T  23596395 cggttacaacggcattctt 23596377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 121
Target Start/End: Original strand, 35132750 - 35132824
Alignment:
Q  47 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 121  Q
    |||||||||||||||| | || ||||  |||||||||||| | ||||||||||| ||||||||||| ||||||||    
T  35132750 aatagcaccagcatctatagtggcttttcgttgagaatcactaaaataagcaggcacagtaacaactgcattctt 35132824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 8102923 - 8103043
Alignment:
Q  1 cagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcagg 100  Q
    |||||||||| |||||||||||||| ||||| ||||| ||||| |  ||| ||||||||||||| || |||||||| |||||||||||||| ||||||||    
T  8102923 cagcagcagttggctcattaataattctcaaaacatttaaaccagcgataacaccagcatctttagttgcttgacgctgagaatcattgaagtaagcagg 8103022  T
Q  101 aacagtaacaacagcattctt 121  Q
     ||||| || || ||||||||    
T  8103023 gacagtgacgacggcattctt 8103043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 7877595 - 7877525
Alignment:
Q  51 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 121  Q
    |||||||||||||| || ||||  ||||||||||||||||||||||| || ||||||||||| ||||||||    
T  7877595 gcaccagcatcttttgtggcttttcgttgagaatcattgaaataagccggcacagtaacaactgcattctt 7877525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 39985902 - 39986022
Alignment:
Q  1 cagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcagg 100  Q
    |||||||||| |||||||| ||||| | ||  ||||| | ||| | |||| | |||||||| || ||||||||||| || || ||||| || ||||||||    
T  39985902 cagcagcagtgggctcattgataattcgcatgacattaagaccggcaataactccagcatccttggtagcttgacgctgggagtcattaaagtaagcagg 39986001  T
Q  101 aacagtaacaacagcattctt 121  Q
     ||||||||||||||||||||    
T  39986002 gacagtaacaacagcattctt 39986022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 8590894 - 8591014
Alignment:
Q  1 cagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcagg 100  Q
    |||| ||||| || |||||||| |||| ||  |||||||| || | |||  ||||||||||||| |||||||  |  ||||||||||| |||||||| ||    
T  8590894 cagcggcagttggttcattaattatccgcattacattcaagccagcaatgacaccagcatctttggtagctttcctctgagaatcattaaaataagctgg 8590993  T
Q  101 aacagtaacaacagcattctt 121  Q
     ||||||||||| ||||||||    
T  8590994 cacagtaacaactgcattctt 8591014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 8602230 - 8602350
Alignment:
Q  1 cagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcagg 100  Q
    |||| ||||| |||||||| || |||| ||  ||||| | ||| | ||| |||||||||||||| || ||||  || ||||||||||| |||||||| ||    
T  8602230 cagctgcagttggctcattgattatccgcattacattgagaccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattaaaataagccgg 8602329  T
Q  101 aacagtaacaacagcattctt 121  Q
     ||||||||||| ||||||||    
T  8602330 cacagtaacaactgcattctt 8602350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 127
Target Start/End: Complemental strand, 10494240 - 10494160
Alignment:
Q  47 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcactgg 127  Q
    |||||||||||||||  | ||||| |  ||||||||||| ||||| ||||| || |||||||||||||||||||| |||||    
T  10494240 aatagcaccagcatcaatagtagcctttcgttgagaatcgttgaagtaagccggcacagtaacaacagcattcttgactgg 10494160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 118
Target Start/End: Original strand, 17260543 - 17260614
Alignment:
Q  47 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcatt 118  Q
    |||| ||||||||||| | || ||||  || ||||||||||||||||||||||||||||||| |||| ||||    
T  17260543 aataacaccagcatctatggtggcttttcgctgagaatcattgaaataagcaggaacagtaataacaacatt 17260614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 8382738 - 8382677
Alignment:
Q  51 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaac 112  Q
    |||||||||||||| || ||||  |||||||||||||||||||| ||||| || ||||||||    
T  8382738 gcaccagcatcttttgtggctttccgttgagaatcattgaaatatgcaggcacggtaacaac 8382677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 124
Target Start/End: Complemental strand, 8017274 - 8017202
Alignment:
Q  52 caccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcac 124  Q
    |||| ||||| || || |||||||| || ||||||||||| ||||| ||||| |||||||| |||||||||||    
T  8017274 caccggcatcctttgtggcttgacgctgcgaatcattgaagtaagctggaactgtaacaacggcattcttcac 8017202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 127
Target Start/End: Complemental strand, 13333322 - 13333242
Alignment:
Q  47 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcactgg 127  Q
    |||||||||||||||| | || || |  || |||||||||||||| ||||| || ||||||||||| |||||||| |||||    
T  13333322 aatagcaccagcatctatggtggcctttcgctgagaatcattgaagtaagccggcacagtaacaacggcattcttgactgg 13333242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 118
Target Start/End: Original strand, 6789842 - 6789885
Alignment:
Q  75 cgttgagaatcattgaaataagcaggaacagtaacaacagcatt 118  Q
    |||||||||||||||||||||||||| ||||||| ||| |||||    
T  6789842 cgttgagaatcattgaaataagcaggcacagtaataactgcatt 6789885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 121
Target Start/End: Original strand, 3147574 - 3147648
Alignment:
Q  47 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 121  Q
    |||| ||||||||||| | || ||||  || |||| |||||||||||||||||| || |||||||| ||||||||    
T  3147574 aataacaccagcatctattgtcgctttccgctgagcatcattgaaataagcaggtacggtaacaactgcattctt 3147648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 8636205 - 8636135
Alignment:
Q  51 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 121  Q
    |||||||||||||| || | || ||| |||||||||||||||||||| || |||||||  || ||||||||    
T  8636205 gcaccagcatctttggtggatttacgctgagaatcattgaaataagcgggcacagtaatgactgcattctt 8636135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 124
Target Start/End: Original strand, 8659696 - 8659742
Alignment:
Q  78 tgagaatcattgaaataagcaggaacagtaacaacagcattcttcac 124  Q
    |||||||||||||| || ||||| || ||||||||||||||||||||    
T  8659696 tgagaatcattgaactatgcaggcactgtaacaacagcattcttcac 8659742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 1301797 - 1301846
Alignment:
Q  78 tgagaatcattgaaataagcaggaacagtaacaacagcattcttcactgg 127  Q
    ||||||||||||||||  ||||| |||||||||||||||||  |||||||    
T  1301797 tgagaatcattgaaatgtgcaggcacagtaacaacagcatttgtcactgg 1301846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 8585541 - 8585501
Alignment:
Q  78 tgagaatcattgaaataagcaggaacagtaacaacagcatt 118  Q
    ||||||||||||||||||||||| ||||| ||||| |||||    
T  8585541 tgagaatcattgaaataagcaggcacagtcacaactgcatt 8585501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 12234996 - 12235072
Alignment:
Q  52 caccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcactgga 128  Q
    ||||||||||| | || ||||  |||||||||||||||||||||||||| || |||||||| |||||||| ||||||    
T  12234996 caccagcatctatagttgcttttcgttgagaatcattgaaataagcaggcacggtaacaactgcattcttaactgga 12235072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 12245265 - 12245198
Alignment:
Q  54 ccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 121  Q
    ||||||||| |||| ||||  || ||||||||| | ||||||||||| ||||||||||||||||||||    
T  12245265 ccagcatctatcgttgcttttcgctgagaatcactaaaataagcaggtacagtaacaacagcattctt 12245198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 121
Target Start/End: Complemental strand, 17716603 - 17716485
Alignment:
Q  3 gcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaa 102  Q
    |||||||| |||||||||||||| ||||  | ||| | ||| | ||||||||||||||  || |||||||| |  ||||||  ||| || |||||||| |    
T  17716603 gcagcagtgggctcattaataattctcatgaaattaagaccagcaatagcaccagcatgcttagtagcttgtctctgagaaaaattaaagtaagcaggga 17716504  T
Q  103 cagtaacaacagcattctt 121  Q
    |||||||||| ||||||||    
T  17716503 cagtaacaacggcattctt 17716485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 7542556 - 7542605
Alignment:
Q  75 cgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcac 124  Q
    |||||||||||||| ||||||||||| ||||||||||| |||||| ||||    
T  7542556 cgttgagaatcattaaaataagcaggtacagtaacaactgcattcgtcac 7542605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 16657379 - 16657309
Alignment:
Q  51 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 121  Q
    |||||||||||| | || ||||  || || ||||||||||| ||||| || ||||||||||||||||||||    
T  16657379 gcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacagtaacaacagcattctt 16657309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 124
Target Start/End: Complemental strand, 4678420 - 4678347
Alignment:
Q  51 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcac 124  Q
    |||||||||||| | |||||||  ||||||||||||||||| || ||||| |||||||||||  ||||||||||    
T  4678420 gcaccagcatctatggtagcttttcgttgagaatcattgaagtatgcaggcacagtaacaacgacattcttcac 4678347  T

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