View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13122_high_5 (Length: 443)
Name: NF13122_high_5
Description: NF13122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13122_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 7 - 427
Target Start/End: Original strand, 48286685 - 48287105
Alignment:
| Q |
7 |
cagcagagaagctaagaatcgaaggtgaactaccagaattactattgatggtgctagcaaccgcacttctcaccttagaaggactagaaaaccctctgga |
106 |
Q |
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| T |
48286685 |
cagcagagaagctaagaatcgaaggtgaactaccagaattactattgatggtgctagcaaccgcacttctcaccttagaaggactagaaaaccctctgga |
48286784 |
T |
|
| Q |
107 |
tggagaagacgcagccgatgcccaaagtttactaggcgaagcaggccgcgcatttccccttataggagaagccattgttctcggcgacatcataggtcca |
206 |
Q |
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| T |
48286785 |
tggagaagacgcagccgatgcccaaagtttactaggcgaagcaggccgcgcatttccccttataggagaagccattgttctcggcgacatcataggtcca |
48286884 |
T |
|
| Q |
207 |
tcactgttataccttttcaattgagaattcttagatggaacactgattcttgaagcaggactagttgacaaaggtgaaccaggatcttgtaaccgacgca |
306 |
Q |
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| T |
48286885 |
tcactgttataccttttcaattgagaattcttagatggaacactgatccttgaagcaggactagttgacaaaggtgaaccaggatcttgtaaccgacgca |
48286984 |
T |
|
| Q |
307 |
accggctattagtttcctgccaaaacttggaagaaacaacaataccacgattttccctcggaaccttaagagcaccaagagaagaatcgtgtcctcctcc |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
48286985 |
accggctattagtttcctgccaaaacttggaagaaacaacaataccacgattttccctcggaaccttaagagcaccaagagaagaatcatgtcctcctcc |
48287084 |
T |
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| Q |
407 |
tgaattactgccagatgaaac |
427 |
Q |
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| T |
48287085 |
tgaattactgccagatgaaac |
48287105 |
T |
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