View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13122_high_6 (Length: 422)
Name: NF13122_high_6
Description: NF13122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13122_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 19 - 412
Target Start/End: Original strand, 47425691 - 47426089
Alignment:
| Q |
19 |
ataaagcccctaaccaacccctcacattcaaagacatattacccctgcaatgtattaaatcactactccacaacaacaccaaacaaaaatcacatcagca |
118 |
Q |
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| T |
47425691 |
ataaagcccctaaccaacccctcacattcaaagacatattacccctgcaatgtattaaatcactactccacaacaacaccaaacaaaaatcacatcagga |
47425790 |
T |
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| Q |
119 |
gtataatttaaactgccggaccacacaaataaggatgtactatattcgaaacttcataagtgggaaggaatagattgttcaatgcctatcaatctagggc |
218 |
Q |
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| T |
47425791 |
gtataatttaaactgccggaccacacaaataaggatgtactatattcgaaacttcataagtgggaaggaatagattgttcaatgcctatcaatctagggc |
47425890 |
T |
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| Q |
219 |
tataaat-tgta--agtagtgtaaagccaaaactagaaaaacatatattaaagccttttctcactaggtatttaaattttttaattctccagatttggac |
315 |
Q |
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| T |
47425891 |
tataaataaggaatagtagtataaagccaaaactagaaaaacatatattaaagccttttctcactaggtatttaaattttttaattctccagatttggac |
47425990 |
T |
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| Q |
316 |
gattatgttagccggaagttgctataaattcattgtgccga--atgatgtcatactaatcaaatgtaaaaaggatatcatatgtaatttggttgttcat |
412 |
Q |
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| T |
47425991 |
gattatgttagctggaagttgctataaattcattgtgccgaatatgatgtcatactaatcaaatgtaaaaaggatatcatacgtaatttggttgttcat |
47426089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 412
Target Start/End: Original strand, 50432185 - 50432303
Alignment:
| Q |
295 |
tttaattctccagatttggacgattatgttagccggaagttgctataaattcattgtgccgaatgatgtcatactaa-tcaaatgtaaaaaggatatcat |
393 |
Q |
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||||||| |||| |||| || ||||| || || |||| |||||||||||||||||||| ||| ||||||||||||| | |||| || ||||||||||| |
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| T |
50432185 |
tttaattttccatatttaaactattatattggctggaaattgctataaattcattgtgctgaacgatgtcatactaattaaaatatatgaaggatatcat |
50432284 |
T |
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| Q |
394 |
atgtaatttggttgttcat |
412 |
Q |
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| T |
50432285 |
gcgaaatttggttcttcat |
50432303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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