View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13122_high_8 (Length: 360)

Name: NF13122_high_8
Description: NF13122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13122_high_8
NF13122_high_8
[»] chr8 (1 HSPs)
chr8 (13-360)||(43281351-43281708)


Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 13 - 360
Target Start/End: Original strand, 43281351 - 43281708
Alignment:
Q  13 aatatactataaaaatggatcaacaaaatttgatatatttaggagaaaatgttagtagaaaat-------gtta-------gtaatcatattaacataat 98  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||       ||||       |||||||||||||||||||    
T  43281351 aatatactataaaaatggatcaacaaaagttgatgtatttaggagaaaatgttagtagcaaattagcatggttactccatggtaatcatattaacataat 43281450  T
Q  99 taatccattgtcaacagacagatatgaaaacgcttaagcgagaattgaggcttagatagaagagacactttacatttagccttttaacttataccctaaa 198  Q
    |||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  43281451 taatccattgtcaacagacaaatatgaaaacgcttaagcaaaaattgaggcttagatagaagagacactttacatttagccttttaacttatgccctaag 43281550  T
Q  199 agcacaagttaacatttttccttatttatttatattatacatctacctgtaagtgtttaactgttaatgctagcaaaatttagcttatgtgaaacacttt 298  Q
    |||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  43281551 agcacaagttaacatttttcc----ttatttatattatacatctacctgtaagtgtttaactgttaatgctagcaaaacttagcttatgtgaaacacttt 43281646  T
Q  299 agcgtataaataccagtcttgtacttgtagttccnnnnnnnntcctttgttaattaaaagtc 360  Q
    ||||||||||||||||||||||||||||||||||        ||||||||||||||||||||    
T  43281647 agcgtataaataccagtcttgtacttgtagttccaaaaaaaatcctttgttaattaaaagtc 43281708  T

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