View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13122_high_9 (Length: 303)
Name: NF13122_high_9
Description: NF13122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13122_high_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 3 - 285
Target Start/End: Complemental strand, 30690075 - 30689793
Alignment:
| Q |
3 |
cagatatggaaatgctgcaaggcccttcagaaatttcctttgaattatttgatattaatcatgattttctttcctttgatatggttgatttctcatcgag |
102 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30690075 |
cagatatggaaatgcagcaaggcccttcagaaatttcctttgaattatttgatattaatcatgattttctttcctttgatatggttgatttctcatcgag |
30689976 |
T |
|
| Q |
103 |
ttcgcagacaccaattaccgaaaacgagccaaaacaattgatgttgaagtcatcatcatctgaagcaaaagaagtgttgcagaataatactaagatggat |
202 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
30689975 |
ttcgcagacaccaattaccaaaaacgagccaaaacaattgatgttgaagtcatcatcatctgaagcaaacgaagtgttgcagaataatactaagatggat |
30689876 |
T |
|
| Q |
203 |
caaaaatcatcatatataggtgtaagaaaaagaccttggggaaagtatgcagcagagatcagagacacaacaagaggaggaag |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30689875 |
caaaaatcatcatatataggtgtaagaaaaagaccttggggaaagtatgcagcagagatcagagacacaacaagaggaggaag |
30689793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 3 - 276
Target Start/End: Complemental strand, 30672180 - 30671907
Alignment:
| Q |
3 |
cagatatggaaatgctgcaaggcccttcagaaatttcctttgaattatttgatattaatcatgattttctttcctttgatatggttgatttctcatcgag |
102 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30672180 |
cagatatggaaatgctgcaaagcccttctgaaatttcctttgaatcatttggtattaatcatgattttctttcctttgatatggttgatttctcatcgag |
30672081 |
T |
|
| Q |
103 |
ttcgcagacaccaattaccgaaaacgagccaaaacaattgatgttgaagtcatcatcatctgaagcaaaagaagtgttgcagaataatactaagatggat |
202 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
|
|
| T |
30672080 |
ttcgcagacaccagttaccgaaaacgagccaaaacaattgatgttgaagtcatcatcatctgaagcaaaagaagtgttgcagaataataataagatgaat |
30671981 |
T |
|
| Q |
203 |
caaaaatcatcatatataggtgtaagaaaaagaccttggggaaagtatgcagcagagatcagagacacaacaag |
276 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||| || ||||| ||||| || |||||||||||||| |
|
|
| T |
30671980 |
caaaagtcatcattaataggtgtaagaaaaagaccttgggggaaatatgctgcagaaataagagacacaacaag |
30671907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 3 - 285
Target Start/End: Complemental strand, 30710835 - 30710562
Alignment:
| Q |
3 |
cagatatggaaatgctgcaag---gcccttcagaaatttcctttgaattatttgatattaatcatgattttctttcctttgatatggttgatttctcatc |
99 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||| |||| |||| ||| | |||| ||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
30710835 |
cagatatggaaatgctgcaacaaagcccttcggaaattcccttcgaatcattaggtatt---catgattgtcttacctttgatatggttgatttctcatc |
30710739 |
T |
|
| Q |
100 |
gagttcgcagacaccaattaccgaaaacgagccaaaacaattgatgttgaagtcatcatcatctgaagcaaaagaagtgttgcagaataatactaagatg |
199 |
Q |
| |
|
||||| ||||||| ||||| |||||||||||||||||||| |||||||||| |||||||||| ||| |||| ||||||| | | |||||| |
|
|
| T |
30710738 |
gagtttgcagacaataattaacgaaaacgagccaaaacaatcaatgttgaagt------catctgaagctaaacaagtaatgcagaacatttataagatt |
30710645 |
T |
|
| Q |
200 |
gatcaaaaatcatcatatataggtgtaagaaaaagaccttggggaaagtatgcagcagagatcagagacacaacaagaggaggaag |
285 |
Q |
| |
|
|||||||| |||||||||||||| || ||||||| ||||||||| ||||| ||||| |||||||| ||||||||||||||||| |
|
|
| T |
30710644 |
gatcaaaa---gtcatatataggtgttaggaaaagacgttggggaaaatatgctgcagaaatcagagatacaacaagaggaggaag |
30710562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 285
Target Start/End: Complemental strand, 30698753 - 30698679
Alignment:
| Q |
211 |
atcatatataggtgtaagaaaaagaccttggggaaagtatgcagcagagatcagagacacaacaagaggaggaag |
285 |
Q |
| |
|
||||||||||||||| || || ||||||||||| || | ||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
30698753 |
atcatatataggtgtgaggaagagaccttgggggaaatttgctgcagagatcagagatacaacaagaggaggaag |
30698679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 211 - 285
Target Start/End: Complemental strand, 30718910 - 30718836
Alignment:
| Q |
211 |
atcatatataggtgtaagaaaaagaccttggggaaagtatgcagcagagatcagagacacaacaagaggaggaag |
285 |
Q |
| |
|
||||||||||||||| || || ||||||||||| || | ||| |||||||| ||||| ||||||||||||||||| |
|
|
| T |
30718910 |
atcatatataggtgtgaggaagagaccttgggggaaatttgctgcagagattagagatacaacaagaggaggaag |
30718836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 285
Target Start/End: Original strand, 15815132 - 15815204
Alignment:
| Q |
213 |
catatataggtgtaagaaaaagaccttggggaaagtatgcagcagagatcagagacacaacaagaggaggaag |
285 |
Q |
| |
|
||||||||||||| || || ||||||||||| || | ||| ||||| |||||||| ||| ||||||||||||| |
|
|
| T |
15815132 |
catatataggtgtgaggaagagaccttgggggaaatttgctgcagaaatcagagatacagcaagaggaggaag |
15815204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 276
Target Start/End: Complemental strand, 30656809 - 30656746
Alignment:
| Q |
213 |
catatataggtgtaagaaaaagaccttggggaaagtatgcagcagagatcagagacacaacaag |
276 |
Q |
| |
|
||||||||||||| || |||||||||||||| || ||||| ||||| || || ||||||||||| |
|
|
| T |
30656809 |
catatataggtgtgaggaaaagaccttgggggaaatatgctgcagaaataagggacacaacaag |
30656746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 212 - 277
Target Start/End: Original strand, 56539091 - 56539156
Alignment:
| Q |
212 |
tcatatataggtgtaagaaaaagaccttggggaaagtatgcagcagagatcagagacacaacaaga |
277 |
Q |
| |
|
|||||||||||||| |||||||| | ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
56539091 |
tcatatataggtgtgagaaaaagtctttggggaaaatatgcagcagagatcagagacacaacaaga |
56539156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University