View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13122_low_11 (Length: 301)
Name: NF13122_low_11
Description: NF13122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13122_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 58 - 294
Target Start/End: Original strand, 8139168 - 8139395
Alignment:
| Q |
58 |
gatgtctcagttttttatgtttcttgatcattaagtataaatcttaatcatttatgtaaaaatctttctcatttatttaaaaatcttgatcatttatttc |
157 |
Q |
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| T |
8139168 |
gatgtctcagttttttatgtttcttgatcattaagtataaatcttaatcatttatgtaaaaatctttctcatttatttaaaaatcttgatcatttatttc |
8139267 |
T |
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| Q |
158 |
tgcaatcatgatcatttccatgaatgatgaatctgtgtttttgaagcgcatctgttgannnnnnnnnnnnnnnnattgagtctttgttactgaatgcatg |
257 |
Q |
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| T |
8139268 |
tgcaatcatgatcatttctatgaatgatgaatctgtgtttttgaagcgcatctgttgatttttttt---------tttagtctttgttactgaatgcatg |
8139358 |
T |
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| Q |
258 |
cttgaatatcactgtttttggaacgatgtctctgctc |
294 |
Q |
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| T |
8139359 |
cttgaatatcactgtttttggaatgatgtctctgctc |
8139395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 24 - 294
Target Start/End: Complemental strand, 7499769 - 7499529
Alignment:
| Q |
24 |
gcactatctgttaatacatggctggctttagaatgatgtctcagttttttatgtttcttgatcattaagtataaatcttaatcatttatgtaaaaatctt |
123 |
Q |
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| T |
7499769 |
gcactatctgttaatacatggctggttttagaatgatgtctcagttttttatgtttctagatcatgaagtaaaaatcttaatcatttatctaaaaatctt |
7499670 |
T |
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| Q |
124 |
tctcatttatttaaaaatcttgatcatttatttctgcaatcatgatcatttccatgaatgatgaatctgtgtttttgaagcgcatctgttgannnnnnnn |
223 |
Q |
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| T |
7499669 |
tatcattta---------------------tttctgcaatcatgatcacttctatgaatgatgaatctgtg-ttttgaagctcatctgttgatttttttt |
7499592 |
T |
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| Q |
224 |
nnnnnnnnattgagtctttgttactgaatgcatgcttgaatatcactgtttttggaacgatgtctctgctc |
294 |
Q |
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| T |
7499591 |
t--------ttgagtctttgttactgaatgcatgcttgaacatcactgtttttggaatgatgtttctgctc |
7499529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 60 - 195
Target Start/End: Complemental strand, 7503107 - 7502967
Alignment:
| Q |
60 |
tgtctcagttttttatgtttcttgatcattaagtataaatcttaatcatttatgtaaaaatct---ttctcatttatttaaaaatcttgatcatttattt |
156 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||| | ||||||||||||||||| | | |||||||| ||||||| |||||||||||||| |
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| T |
7503107 |
tgtcccagttttttatgtttcttgatcattaagtaaaaatcctgatcatttatgtaaaaatatcattaatcatttatgtaaaaatattgatcatttattt |
7503008 |
T |
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| Q |
157 |
ctgcaatc--atgatcatttccatgaatgatgaatctgtgt |
195 |
Q |
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| T |
7503007 |
ctgcaatcatatgatcacttctatgaatgatgaatctgtgt |
7502967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 288
Target Start/End: Complemental strand, 7502928 - 7502878
Alignment:
| Q |
238 |
tctttgttactgaatgcatgcttgaatatcactgtttttggaacgatgtct |
288 |
Q |
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| T |
7502928 |
tctttgttactgattgcatgcttggatatcactgtttttggaatgatgtct |
7502878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 8139087 - 8139134
Alignment:
| Q |
24 |
gcactatctgttaatacatggctggctttagaatgatgtctcagtttt |
71 |
Q |
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| T |
8139087 |
gcactatcagttaatacatggctgactttggaattatgtctcagtttt |
8139134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 7503160 - 7503119
Alignment:
| Q |
153 |
atttctgcaatcatgatcatttccatgaatgatgaatctgtg |
194 |
Q |
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| T |
7503160 |
atttctgcaatcatgatcacttctatgaatgatgaatttgtg |
7503119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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