View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13122_low_14 (Length: 258)
Name: NF13122_low_14
Description: NF13122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13122_low_14 |
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| [»] chr5 (7 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 7 - 258
Target Start/End: Original strand, 14577585 - 14577836
Alignment:
| Q |
7 |
gtgagatgaatattaagtgactagcggaaaactctcttttgcatcccgctgcttgtgttttccaccaaataagaatctaatagtttgagcacttcgtgat |
106 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
14577585 |
gtgatatgaatattaagtgactagcgaaaaactctcttttgcatcccactgcttgtgttttccatcaaataagaatctaatagttggagcacttcgtgat |
14577684 |
T |
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| Q |
107 |
aagcttcatgaattgtcactctcgagaaatggcaatgctattttttctttggctaatgctagttgtagcgaaagtttacatagcgaattaatcacaaacc |
206 |
Q |
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||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14577685 |
aagcttcgtgaattgtcacactcgagaaacggcaatgctattttttctttggctaatgctagttgtagcgaaagtttacatagcgaattaatcacaaacc |
14577784 |
T |
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| Q |
207 |
tttatatgaatattaagtgattttagcgaaagactctcttttgcatcccacc |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14577785 |
tttatatgaatattaagtgattttagcgaaagactctcttttgcatcccacc |
14577836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 12 - 257
Target Start/End: Original strand, 14577389 - 14577633
Alignment:
| Q |
12 |
atgaatattaagtgac--tagcggaaaactctcttttgcatcccgctgcttgtgttttccaccaaataagaatctaatagtttgagcacttcgtgataag |
109 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| | |||||||||| ||||||||||||| |||| ||| ||||||||||||||||| |
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| T |
14577389 |
atgaatattaagtgaccgtagcggaaaactctcttttgcatcccaccgcttgtgtttat-accaaataagaatttaatggttggagcacttcgtgataag |
14577487 |
T |
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| Q |
110 |
cttcatgaattgtcactctcgagaaatggcaatgctattttttctttggctaatgctagttgtagcgaaagtttacatagcgaattaatcacaaaccttt |
209 |
Q |
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| T |
14577488 |
cttcgtgaattgtcaatctcaagaaatagcaatgctcttttctctttggctaatgctactaaaagcgaaattttacatagcaaattaatcacgaaccgtg |
14577587 |
T |
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| Q |
210 |
atatgaatattaagtgattttagcgaaagactctcttttgcatcccac |
257 |
Q |
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| T |
14577588 |
atatgaatattaagtga--ctagcgaaaaactctcttttgcatcccac |
14577633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 12 - 258
Target Start/End: Original strand, 14578181 - 14578428
Alignment:
| Q |
12 |
atgaatattaagtgact--agcggaaaactctcttttgcatcccgctgcttgtgttttccaccaaataagaatctaatagtttgagcacttcgtgataag |
109 |
Q |
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||||||||||||||||| | |||||||||||||||||||||| | | ||||||||||||||||||||||||||||| ||| ||||||||| ||||||| |
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| T |
14578181 |
atgaatattaagtgactgtaacggaaaactctcttttgcatccaccag-ttgtgttttccaccaaataagaatctaatggttggagcacttcatgataag |
14578279 |
T |
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| Q |
110 |
cttcatgaattgtcactctcgagaaatggcaatgctattttttctttggctaatgctagttgtagcgaaagtttacatagcgaattaatcacaaaccttt |
209 |
Q |
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||| |||||||| | |||||||||| |||||||| |||| |||||||||||||||| ||||||| |||||||||||| | |||||||||| ||| || |
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| T |
14578280 |
ctttgtgaattgttagcctcgagaaatagcaatgctcttttctctttggctaatgctacttgtagcaaaagtttacataccaaattaatcacgaacggtt |
14578379 |
T |
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| Q |
210 |
atatgaatattaagtgattttagcgaaagactctcttttgcatcccacc |
258 |
Q |
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| T |
14578380 |
atatgaatattaagtgaccgtagcggaaaactctcttttgcatcccacc |
14578428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 34 - 254
Target Start/End: Original strand, 14578004 - 14578223
Alignment:
| Q |
34 |
aaaactctcttttgcatcccgctgcttgtgttttccaccaaataagaatctaatagtttgagcacttcgtgataagcttcatgaattgtcactctcgaga |
133 |
Q |
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|||||||||||||||||||| | |||||||||||||||||||||||||||| ||| ||||||||||| ||||||||| |||||||||| ||| |||| |
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| T |
14578004 |
aaaactctcttttgcatcccatcacctgtgttttccaccaaataagaatctaatggttggagcacttcgtaataagcttcgtgaattgtcagtctagaga |
14578103 |
T |
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| Q |
134 |
aatggcaatgctattttttctttggctaatgctagttgtagcgaaagtttacatagcgaattaatcacaaacctttatatgaatattaagtgattttagc |
233 |
Q |
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|||| ||||||| ||| | ||||||||||||||| |||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||| | || | |
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| T |
14578104 |
aatgacaatgctctttct-ctttggctaatgctacttgtagcgaaagtttacatatcgaattaatcacgaaccattatatgaatattaagtgactgtaac |
14578202 |
T |
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| Q |
234 |
gaaagactctcttttgcatcc |
254 |
Q |
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| T |
14578203 |
ggaaaactctcttttgcatcc |
14578223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 105 - 258
Target Start/End: Original strand, 14577282 - 14577435
Alignment:
| Q |
105 |
ataagcttcatgaattgtcactctcgagaaatggcaatgctattttttctttggctaatgctagttgtagcgaaagtttacatagcgaattaatcacaaa |
204 |
Q |
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||||||||| |||||||||| |||| |||||| |||||||| |||| ||||||| ||||| | ||||||||||||||||||||||||||||||||| || |
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| T |
14577282 |
ataagcttcgtgaattgtcagtctcaagaaatagcaatgctcttttctctttggataatgttgcttgtagcgaaagtttacatagcgaattaatcacgaa |
14577381 |
T |
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| Q |
205 |
cctttatatgaatattaagtgattttagcgaaagactctcttttgcatcccacc |
258 |
Q |
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|| ||||||||||||||||||| ||||| || |||||||||||||||||||| |
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| T |
14577382 |
ccgttatatgaatattaagtgaccgtagcggaaaactctcttttgcatcccacc |
14577435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 12 - 256
Target Start/End: Original strand, 14577790 - 14578024
Alignment:
| Q |
12 |
atgaatattaagtgact--agcggaaaactctcttttgcatcccgctgcttgtgttttccaccaaataagaatctaatagtttgagcacttcgtgataag |
109 |
Q |
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||||||||||||||| | |||| || ||||||||||||||||| | ||||||||||||||||||||||||||||||| ||| || ||||| |
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| T |
14577790 |
atgaatattaagtgattttagcgaaagactctcttttgcatcccaccgcttgtgttttccaccaaataagaatctaatggttgaagtacttc-------- |
14577881 |
T |
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| Q |
110 |
cttcatgaattgtcactctcgagaaatggcaatgctattttttctttggctaatgctagttgtagcgaaagtttacatagcgaattaatcacaaaccttt |
209 |
Q |
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||||||||||| |||| ||||| |||||| |||| ||||||||||||| || |||||||||||||||| ||||||||||||||| |||| || |
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| T |
14577882 |
----atgaattgtcaatctctcgaaataataatgctcttttctctttggctaatgttacttgtagcgaaagtttatatagcgaattaatcaagaaccatt |
14577977 |
T |
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| Q |
210 |
atatgaatattaagtgattttagcgaaagactctcttttgcatccca |
256 |
Q |
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|||||||||||| |||| | |||| || |||||||||||||||||| |
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| T |
14577978 |
atatgaatattacgtgaatgtagcataaaactctcttttgcatccca |
14578024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 145
Target Start/End: Original strand, 14578382 - 14578517
Alignment:
| Q |
12 |
atgaatattaagtgac--tagcggaaaactctcttttgcatcccgctgcttgtgttttccaccaaataagaatctaatagtttgagcacttcgtgataag |
109 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||| ||| |||||||| |||||| |
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| T |
14578382 |
atgaatattaagtgaccgtagcggaaaactctcttttgcatcccaccacttatgttttccaccaaataagaatctaatggttgctgcacttcgcgataag |
14578481 |
T |
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| Q |
110 |
cttcatgaattgtcactctcgagaaatggcaatgct |
145 |
Q |
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|||| | |||||||| ||||| |||| |||||||| |
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| T |
14578482 |
cttcgtaaattgtcagtctcgtaaaatagcaatgct |
14578517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 105
Target Start/End: Original strand, 8907232 - 8907327
Alignment:
| Q |
12 |
atgaatattaagtgacta--gcggaaaactctcttttgcatcccgctgcttgtgttttccaccaaataagaatctaatagtttgagcacttcgtga |
105 |
Q |
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||||||||||| |||||| || |||||||| ||||||||| | |||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
8907232 |
atgaatattaaatgactatagcaaaaaactctgttttgcatctcatcgcttgtgttttccaccaaataaaaatctaattgtttgagcacttcgtga |
8907327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 253
Target Start/End: Original strand, 8907180 - 8907273
Alignment:
| Q |
160 |
taatgctagttgtagcgaaagtttacatagcgaattaatcacaaacctttatatgaatattaagtgattttagcgaaagactctcttttgcatc |
253 |
Q |
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|||||||| ||||||| |||||||||||| |||||||||| |||| ||||||||||||||| ||| | |||| ||| ||||| ||||||||| |
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| T |
8907180 |
taatgctacttgtagcaaaagtttacataacgaattaatcgcaaattgttatatgaatattaaatgactatagcaaaaaactctgttttgcatc |
8907273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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