View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13122_low_16 (Length: 235)
Name: NF13122_low_16
Description: NF13122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13122_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 33079096 - 33079325
Alignment:
| Q |
1 |
caccacgccctctcttctctgactaacctcccctaaataactatgctaattctactgtgccttttggatgccattgaataacttacttcaacta------ |
94 |
Q |
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| T |
33079096 |
caccacgccctctcttctctgactaacctcccctaaataactatgctaattctactgtgccttttggatgccattgaataacttacttcgactagaccct |
33079195 |
T |
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| Q |
95 |
----tctaaccaaacatattcctatcacacatattgaattcaatgtttgtaaactagcattaagaacatgcatatctttatcggaattaagatatgtatg |
190 |
Q |
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| T |
33079196 |
gctatctaaccaaacatattcatatcacacatattgaattcaatgtttgtaaactagcattaagaacatgcatatctttataggaattaagatatgtatg |
33079295 |
T |
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| Q |
191 |
cataattttaatacctgatgatgaaccttt |
220 |
Q |
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||||||||||||||||| |||||||||||| |
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| T |
33079296 |
cataattttaatacctggtgatgaaccttt |
33079325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 41518755 - 41518969
Alignment:
| Q |
17 |
ctctgactaacctcccctaaataactatgctaattctactgtgccttttggatgccattgaataacttacttcaact----------atctaaccaaaca |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| | | | |||||||||||| |||||| ||| ||||||||| |
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| T |
41518755 |
ctctgactaacctcccctaaataactatgctaattctactatgccttttggtttctaatgaataacttacgtcaactagaccctgccatccaaccaaaca |
41518854 |
T |
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| Q |
107 |
tat-tcctatcacacatattgaattcaatgtttgtaaactagcattaagaacatgcatatctttatcggaattaagatatgtatgcataattttaatacc |
205 |
Q |
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| T |
41518855 |
tttatccgatcacccataatgaattcaatgttcctaaagtagtattcagaccatgcatatctttataggaattaagaaatgtaagcataatttatatacc |
41518954 |
T |
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| Q |
206 |
tgatgatgaaccttt |
220 |
Q |
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| T |
41518955 |
tgatgatgcaccttt |
41518969 |
T |
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