View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13122_low_17 (Length: 228)
Name: NF13122_low_17
Description: NF13122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13122_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 14578263 - 14578474
Alignment:
| Q |
1 |
gagcacttcatgataagctttgtgaattgttagcctcgagaaatagaaatgctcttttctctttggctaatgctacttgtagcgaaagtttacataccaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
14578263 |
gagcacttcatgataagctttgtgaattgttagcctcgagaaatagcaatgctcttttctctttggctaatgctacttgtagcaaaagtttacataccaa |
14578362 |
T |
|
| Q |
101 |
attaatcacgaacggttatatgaatattaagtgaccggagcagaaaactctcttttgcatcccaccacttgtgttttccaccaaataagaatctaatggt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
14578363 |
attaatcacgaacggttatatgaatattaagtgaccgtagcggaaaactctcttttgcatcccaccacttatgttttccaccaaataagaatctaatggt |
14578462 |
T |
|
| Q |
201 |
tgctgcacttcg |
212 |
Q |
| |
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|||||||||||| |
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| T |
14578463 |
tgctgcacttcg |
14578474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 216
Target Start/End: Original strand, 14577282 - 14577484
Alignment:
| Q |
13 |
ataagctttgtgaattgttagcctcgagaaatagaaatgctcttttctctttggctaatgctacttgtagcgaaagtttacataccaaattaatcacgaa |
112 |
Q |
| |
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|||||||| ||||||||| || ||| |||||||| ||||||||||||||||||| ||||| | ||||||||||||||||||||| | ||||||||||||| |
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| T |
14577282 |
ataagcttcgtgaattgtcagtctcaagaaatagcaatgctcttttctctttggataatgttgcttgtagcgaaagtttacatagcgaattaatcacgaa |
14577381 |
T |
|
| Q |
113 |
cggttatatgaatattaagtgaccggagcagaaaactctcttttgcatcccaccacttgtgttttccaccaaataagaatctaatggttgctgcacttcg |
212 |
Q |
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| ||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||| ||| ||||||||||||| ||||||||| |||||||| |
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| T |
14577382 |
ccgttatatgaatattaagtgaccgtagcggaaaactctcttttgcatcccaccgcttgtg-tttataccaaataagaatttaatggttggagcacttcg |
14577480 |
T |
|
| Q |
213 |
tgat |
216 |
Q |
| |
|
|||| |
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| T |
14577481 |
tgat |
14577484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 14578063 - 14578276
Alignment:
| Q |
1 |
gagcacttcatgataagctttgtgaattgttagcctcgagaaatagaaatgctcttttctctttggctaatgctacttgtagcgaaagtttacataccaa |
100 |
Q |
| |
|
||||||||| | |||||||| ||||||||| || || ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| | | |
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| T |
14578063 |
gagcacttcgtaataagcttcgtgaattgtcagtctagagaaatgacaatgctcttt-ctctttggctaatgctacttgtagcgaaagtttacatatcga |
14578161 |
T |
|
| Q |
101 |
attaatcacgaacggttatatgaatattaagtgaccggagcagaaaactctcttttgcatcccaccacttgtgttttccaccaaataagaatctaatggt |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| | | | |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
14578162 |
attaatcacgaaccattatatgaatattaagtgactgtaacggaaaactctcttttgcat-ccaccagttgtgttttccaccaaataagaatctaatggt |
14578260 |
T |
|
| Q |
201 |
tgctgcacttcgtgat |
216 |
Q |
| |
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|| ||||||| |||| |
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| T |
14578261 |
tggagcacttcatgat |
14578276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 14577471 - 14577684
Alignment:
| Q |
1 |
gagcacttcatgataagctttgtgaattgttagcctcgagaaatagaaatgctcttttctctttggctaatgctacttgtagcgaaagtttacataccaa |
100 |
Q |
| |
|
||||||||| |||||||||| ||||||||| | ||| |||||||| |||||||||||||||||||||||||||||| ||||||| |||||||| ||| |
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| T |
14577471 |
gagcacttcgtgataagcttcgtgaattgtcaatctcaagaaatagcaatgctcttttctctttggctaatgctactaaaagcgaaattttacatagcaa |
14577570 |
T |
|
| Q |
101 |
attaatcacgaacggttatatgaatattaagtgaccggagcagaaaactctcttttgcatcccaccacttgtgttttccaccaaataagaatctaatggt |
200 |
Q |
| |
|
||||||||||||| || |||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||| || |
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| T |
14577571 |
attaatcacgaaccgtgatatgaatattaagtgac--tagcgaaaaactctcttttgcatcccactgcttgtgttttccatcaaataagaatctaatagt |
14577668 |
T |
|
| Q |
201 |
tgctgcacttcgtgat |
216 |
Q |
| |
|
|| |||||||||||| |
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| T |
14577669 |
tggagcacttcgtgat |
14577684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 14577671 - 14577872
Alignment:
| Q |
1 |
gagcacttcatgataagctttgtgaattgttagcctcgagaaatagaaatgctcttttctctttggctaatgctacttgtagcgaaagtttacataccaa |
100 |
Q |
| |
|
||||||||| |||||||||| ||||||||| | ||||||||| | |||||| |||| |||||||||||||||| |||||||||||||||||||| | | |
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| T |
14577671 |
gagcacttcgtgataagcttcgtgaattgtcacactcgagaaacggcaatgctattttttctttggctaatgctagttgtagcgaaagtttacatagcga |
14577770 |
T |
|
| Q |
101 |
attaatcacgaacggttatatgaatattaagtgaccggagcagaaaactctcttttgcatcccaccacttgtgttttccaccaaataagaatctaatggt |
200 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||| ||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
14577771 |
attaatcacaaacctttatatgaatattaagtgattttagcgaaagactctcttttgcatcccaccgcttgtgttttccaccaaataagaatctaatggt |
14577870 |
T |
|
| Q |
201 |
tg |
202 |
Q |
| |
|
|| |
|
|
| T |
14577871 |
tg |
14577872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 48 - 213
Target Start/End: Original strand, 14577908 - 14578073
Alignment:
| Q |
48 |
aatgctcttttctctttggctaatgctacttgtagcgaaagtttacataccaaattaatcacgaacggttatatgaatattaagtgaccggagcagaaaa |
147 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| ||| | ||||||||| |||| |||||||||||||| |||| | |||| |||| |
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| T |
14577908 |
aatgctcttttctctttggctaatgttacttgtagcgaaagtttatatagcgaattaatcaagaaccattatatgaatattacgtgaatgtagcataaaa |
14578007 |
T |
|
| Q |
148 |
ctctcttttgcatcccaccacttgtgttttccaccaaataagaatctaatggttgctgcacttcgt |
213 |
Q |
| |
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||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
14578008 |
ctctcttttgcatcccatcacctgtgttttccaccaaataagaatctaatggttggagcacttcgt |
14578073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 68 - 215
Target Start/End: Original strand, 8907180 - 8907327
Alignment:
| Q |
68 |
taatgctacttgtagcgaaagtttacataccaaattaatcacgaacggttatatgaatattaagtgaccggagcagaaaactctcttttgcatcccacca |
167 |
Q |
| |
|
|||||||||||||||| |||||||||||| | |||||||| | || |||||||||||||||| |||| |||| |||||||| ||||||||| || | |
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|
| T |
8907180 |
taatgctacttgtagcaaaagtttacataacgaattaatcgcaaattgttatatgaatattaaatgactatagcaaaaaactctgttttgcatctcatcg |
8907279 |
T |
|
| Q |
168 |
cttgtgttttccaccaaataagaatctaatggttgctgcacttcgtga |
215 |
Q |
| |
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||||||||||||||||||||| |||||||| ||| ||||||||||| |
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| T |
8907280 |
cttgtgttttccaccaaataaaaatctaattgtttgagcacttcgtga |
8907327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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