View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13122_low_4 (Length: 529)
Name: NF13122_low_4
Description: NF13122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13122_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 14 - 508
Target Start/End: Complemental strand, 41250128 - 41249644
Alignment:
| Q |
14 |
aatatccgttagttagttagttagttctgaagagaagaaattaaagacattggaaagacatgatcaaatgttttgtattatttgagatgaattttatgag |
113 |
Q |
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| T |
41250128 |
aatatccgttagttagttagttagttctgaagagaagaaattaaagacat-ggaaagacatgatcaaatgttttg---------agatgaattttatgag |
41250039 |
T |
|
| Q |
114 |
actggtatttatttattctgccactggtagttatcagcacagatttggtactttattttcagctggctggatgtgatattgtgatgattgatgtcccaca |
213 |
Q |
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| T |
41250038 |
actggtatttatttattctgccactggtagttatcagcacagatttggtactttattttcagctggctggatgtgatattgtgatgattgatgtcccaca |
41249939 |
T |
|
| Q |
214 |
aaaattatgagtacattttcaaattttgatgagtttaaagatgaatcgatacaggggtgatttgtaatgtagtgatcctatgatgttttgcatagcatga |
313 |
Q |
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| T |
41249938 |
aaaattatgagtatattttcaaattttgatgagtttaaagatgaatcgatacaggggggatttgtaatgtagtgatcctctgatgttttgcatagcatga |
41249839 |
T |
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| Q |
314 |
aatatacattattcaactggttttttatatgcacacacaaaaagctacggttgcaatttctttaaaatataccgtcttgtctttttgttgagtaaatgta |
413 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41249838 |
aatatacattattcaactggttttatatatgcacacacaaaaagctacggttgcaatttctttaaaatataccgtcttgtctttttgttgagtaaatgta |
41249739 |
T |
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| Q |
414 |
atttgtacgtcttcgccatattgacatgttttactgagtaatagaccgtccattatttcatcaaaagatagagaacagagcaaatttacagtgta |
508 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41249738 |
atttgtacgtcttcgccatattgacatgttttactgagtaatagaccgtccattatttcatcaaaagatagagaacagagcaaatttacagtgta |
41249644 |
T |
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