View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13122_low_5 (Length: 495)
Name: NF13122_low_5
Description: NF13122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13122_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 455; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 11 - 481
Target Start/End: Complemental strand, 44525695 - 44525225
Alignment:
| Q |
11 |
agaatattgcaagggtcatcttcactctttgaaacagagatagaagcagcacggcggttggcgtcgcgtttgcgggtggttccgatgatgttggtattct |
110 |
Q |
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| T |
44525695 |
agaaaattgcaagggtcatcttcactctttgaaacagagatggaagcagcacggcggttggcgtcgcgtttgcgggtggttccgatgatgttggtattct |
44525596 |
T |
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| Q |
111 |
caaacgccaccgtatcatcatcttcttctagttgtaacaccgaaactccaccttcgaataccaaactttctagctttagctcagcttcttcagaaacggc |
210 |
Q |
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| T |
44525595 |
caaacgccaccgtatcatcatcttcttctagttgtaacaccgaaactccaccttcgaataccaaactttctagctttagctcagcttcttcagaaacggc |
44525496 |
T |
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| Q |
211 |
attcttaagtaaaacactgaaatccgaattgcctcacattgtacaagctggtgacccagttcttcacgagccggcacgtgaagttgatcacagtgagatt |
310 |
Q |
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| T |
44525495 |
attcttaagtaaaacactgaaatccgaattgcctcacattgtacaagctggtgacccagttcttcacgagccggcacgtgaagttgatcacagtgagatt |
44525396 |
T |
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| Q |
311 |
aattcagacaagattcagaagattatcgatgacatgattcttgtcatgagaaatgctcctggaattagtctttctgctcaaaaaattggtatccccttaa |
410 |
Q |
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| T |
44525395 |
aattcagacaagattcagaagattatcgatggcatgattcttgtcatgagaaatgctcctggaattagtctttctgctcaaaaaattggtatccccttaa |
44525296 |
T |
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| Q |
411 |
gggtatgtatgaatcaatatttcatttcggttggacattatacacaccttcaatgtgaagtgttggtgttg |
481 |
Q |
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| T |
44525295 |
gggtatgtatgaatcaatatttcatttcggttggacattacacacaccttcaatgtgaagtgttggtgttg |
44525225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 237 - 417
Target Start/End: Complemental strand, 44530257 - 44530077
Alignment:
| Q |
237 |
aattgcctcacattgtacaagctggtgacccagttcttcacgagccggcacgtgaagttgatcacagtgagattaattcagacaagattcagaagattat |
336 |
Q |
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|||||||| |||||||| |||| ||||| |||||| |||| ||||| |||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
44530257 |
aattgccttacattgtaaaagcaggtgatccagttattcatgagcctgcacgtgaggttgatcacagtgagattaaatcagacaagattcagaatattat |
44530158 |
T |
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| Q |
337 |
cgatgacatgattcttgtcatgagaaatgctcctggaattagtctttctgctcaaaaaattggtatccccttaagggtatg |
417 |
Q |
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||||| |||||||||||||||||||| || |||||| | || || |||| | | ||||||||||||||||||||||||| |
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| T |
44530157 |
tgatgatatgattcttgtcatgagaaaagcccctggagtaggtgttgctgccccacaaattggtatccccttaagggtatg |
44530077 |
T |
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