View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13123_low_4 (Length: 249)
Name: NF13123_low_4
Description: NF13123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13123_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 6 - 211
Target Start/End: Complemental strand, 39705674 - 39705469
Alignment:
| Q |
6 |
agcagcacagacactaatcaaacacattcacgtatgattataatcacacctacttaaaacaaacaaaatatagtcaatccatttggcggagagtggagca |
105 |
Q |
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| T |
39705674 |
agcatcacaaacactaatcaaacacattcacgtatgattataatcacacctagttaaaacaaacaaaatatagtcaatccatttggcggagagtggaaca |
39705575 |
T |
|
| Q |
106 |
tccaattactaatcttgatagaaagttgcaacataatagatggatttgatttcttcactcaactaaccactggatattgatcaatattgcataacatgat |
205 |
Q |
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| T |
39705574 |
tccaattactaatattgatagaaagttgcaacataatagatggatttgatttcttcactcaactaaccactggatattaatcaatattgcacaacatgat |
39705475 |
T |
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| Q |
206 |
tcaatc |
211 |
Q |
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|||||| |
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| T |
39705474 |
tcaatc |
39705469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 2217338 - 2217445
Alignment:
| Q |
16 |
acactaatcaaacacattcacgtatgattataatcacacctacttaaaacaaacaaaa-tatagtcaatccatttggcggagagtggagcatccaattac |
114 |
Q |
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||||||||| | | ||||||| ||||||||| | ||||||||||||||||||||||| | | |||||||||| | ||||||| ||||| ||||||| |
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| T |
2217338 |
acactaatccaccccattcacatatgattatc-taacacctacttaaaacaaacaaaacaacaatcaatccattggtttgagagtgaagcattcaattac |
2217436 |
T |
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| Q |
115 |
taatcttga |
123 |
Q |
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||||||||| |
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| T |
2217437 |
taatcttga |
2217445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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