View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13124_high_13 (Length: 244)
Name: NF13124_high_13
Description: NF13124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13124_high_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 2020053 - 2019845
Alignment:
| Q |
1 |
gtagacttaacagaagttagatgtaagaatctattagagcaatggttaaagtttgggtttagctaacatgcgctcatagggcatttagagcaattattaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2020053 |
gtagacttaacagaagttagatgtaagaatctatt-----------taaagtttgggtttagctaacatgtgctcatagggcatttagagcaattattaa |
2019965 |
T |
|
| Q |
101 |
agtttggattttgctaacatgcgcacttaggggcacttgttaaagaataaaaactaaaagtttgtgataaaaaagacaatttgtaaactctcaagaaatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2019964 |
agtttggattttgctaacatgcgcacttaggggcacttgttaaagaataaaaactaaaagtttgtgataaaaaagacaatttgtaaactctcaagaaatt |
2019865 |
T |
|
| Q |
201 |
aaatataccatttccaatat |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
2019864 |
aaatataccatttccaatat |
2019845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 3 - 228
Target Start/End: Complemental strand, 2036786 - 2036563
Alignment:
| Q |
3 |
agacttaacagaagttagatgtaagaatctattagagcaatggttaaagtttgggtttagctaacatgcgctcatagggcatttagagcaattattaaag |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || ||||||||| | |||||||| ||||| ||||||| |||||||||| ||||||| |
|
|
| T |
2036786 |
agacttaacagaagttagatgtaagaatctattagagcaatgattgaagtttgggcattgctaacatccgctcttagggcacttagagcaatgattaaag |
2036687 |
T |
|
| Q |
103 |
tttggattttgctaacatgcgcacttaggggcacttgttaaagaataaaaactaaaagtttgtgataaaaaagacaatttgtaaactctcaagaaattaa |
202 |
Q |
| |
|
|| ||||||||||||||||| | ||||||| |||||||||||||||| ||| |||||||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
2036686 |
tt-ggattttgctaacatgctctcttaggg-cacttgttaaagaatacaaattaaaagtttgtgttaaaaaagacaatttgtaaactttcaagaaattaa |
2036589 |
T |
|
| Q |
203 |
atataccatttccaatataatgtttc |
228 |
Q |
| |
|
|||||| ||||| |||||||||||| |
|
|
| T |
2036588 |
atatacaatttcacatataatgtttc |
2036563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 1994599 - 1994532
Alignment:
| Q |
161 |
tttgtgataaaaaagacaatttgtaaactctcaagaaattaaatataccatttccaatataatgtttc |
228 |
Q |
| |
|
|||||||| ||||||| ||||| ||| | ||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
1994599 |
tttgtgatgaaaaagataatttaaaaaatttcaagaaatgaaatacaccatttccaatataatgtttc |
1994532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 1994697 - 1994641
Alignment:
| Q |
14 |
aagttagatgtaagaatctattagagcaatggttaaagtttgggtttagctaacatg |
70 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||| || | ||||||||| |
|
|
| T |
1994697 |
aagttagatggtagaatctattagagcaatgattaaagtttgagtcttgctaacatg |
1994641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 35315715 - 35315675
Alignment:
| Q |
111 |
ttgctaacatgcgcacttaggggcacttgttaaagaataaa |
151 |
Q |
| |
|
||||||||||| || |||||||||||||||||| ||||||| |
|
|
| T |
35315715 |
ttgctaacatgtgcccttaggggcacttgttaaggaataaa |
35315675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University