View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13124_high_3 (Length: 597)
Name: NF13124_high_3
Description: NF13124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13124_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 354 - 583
Target Start/End: Complemental strand, 29821610 - 29821381
Alignment:
| Q |
354 |
cctgattcatctataaacacaataatatggtgcaccatttacacattatcttgtctcaaacactgtcactgttaaaagcagcatacataaaataacacag |
453 |
Q |
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| T |
29821610 |
cctgattcatctataaacacaataatatggtgcaccatttacacattatcttgtctcaaacactgtcactgttaaaagcagcatacataaaataacacag |
29821511 |
T |
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| Q |
454 |
ctaccacagtacaaactagaaggttgtgccaattattgaacaaatggcaacattcactatatgtgaagcatcttcttcctctccatgcagttcaagttcg |
553 |
Q |
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| T |
29821510 |
ctaccacagtacaaactagaaggttgtgccaattattgaacaaatggcaacattcactatatgtgaagcatcttcttcctctccatgcagttcaagttcg |
29821411 |
T |
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| Q |
554 |
accacacggttatgcacctaccatgtgttt |
583 |
Q |
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| T |
29821410 |
accacacggttatgcagctaccatgtgttt |
29821381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 68 - 318
Target Start/End: Complemental strand, 29821954 - 29821701
Alignment:
| Q |
68 |
agacattaatcagtctctatgaaaacgaattaatcagtctttatgaagacaaattaaattttacattattctgacacatttttaccacacttaaaa-ttc |
166 |
Q |
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| T |
29821954 |
agacattaatcaatctctaagaaaacgaattaatcagtctttataaagacgaattatattttacattattctggcacatttttaccacacttaaaagttc |
29821855 |
T |
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| Q |
167 |
atcaacggacgccgaaagnnnnnnngctacatggggaggaggaagaagctttggatatggtggagaga--actcaaaatattacttattaatcaatacta |
264 |
Q |
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| T |
29821854 |
atcaacggacgccgaaagaaaaaaagctacatggggaggaggaagaagctttggatatggtggagagataactcaaaatattacttattaatcaatacta |
29821755 |
T |
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| Q |
265 |
cacaagtgatagatacagttcatggtgtaccaataacattagtctccagattca |
318 |
Q |
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| T |
29821754 |
cacaagtgatagatacagttcatggtgtaccaataacattagtctccagattca |
29821701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 518 - 579
Target Start/End: Original strand, 29570883 - 29570944
Alignment:
| Q |
518 |
gaagcatcttcttcctctccatgcagttcaagttcgaccacacggttatgcacctaccatgt |
579 |
Q |
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| T |
29570883 |
gaagcctcttcttcttcttcttgcagatcaagttcaaccacaagtttatgcacctaccatgt |
29570944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 518 - 583
Target Start/End: Complemental strand, 29830112 - 29830047
Alignment:
| Q |
518 |
gaagcatcttcttcctctccatgcagttcaagttcgaccacacggttatgcacctaccatgtgttt |
583 |
Q |
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| T |
29830112 |
gaagcctcttcttcttcttcttgcagatcaagttcaaccacaagtttatgcagctaccatgtgttt |
29830047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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