View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13124_high_4 (Length: 593)
Name: NF13124_high_4
Description: NF13124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13124_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 305
Target Start/End: Original strand, 13080366 - 13080652
Alignment:
| Q |
19 |
tgtcgaacacactcttcatctccatcttcagtttccatcttaggctttataatatttccaaacaaggttttttgaacaacttccttcgcttcaaaaggtg |
118 |
Q |
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| T |
13080366 |
tgtcgaacacactcttcatctccatcttcagtttccaacttaggctttataatatttccaaacaaggttttttgaacaacttccttagcttcaaaaggtg |
13080465 |
T |
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| Q |
119 |
gattttcatattcctctttgaattcattttggtttatacaatcaatattactaggaatatgatcaactacannnnnnncaagttttgatgccttcgttgg |
218 |
Q |
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| T |
13080466 |
gattttcatattcctctttgaattcattttggtttataaaatcaatattactaggaatatgatcaactacatttttttcaagttttgatgccttcgttgg |
13080565 |
T |
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| Q |
219 |
ttcaaatggttcaatgctactttctttaagtctatgcttagtctcaaactctagttctccaaattccttttgttttgaatttccaat |
305 |
Q |
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| T |
13080566 |
ttcaaatggttcaatgctactttctttaagtctatccttagtctcacactctagttctccaaattccttttgttttgaatttccaat |
13080652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 400 - 535
Target Start/End: Original strand, 13075424 - 13075559
Alignment:
| Q |
400 |
tccatctcttgaaacatttgtgttttccttccatcaaatactccaatatcatcattctcttgaaagttttgatttgtaatttctttctcaattctgtccc |
499 |
Q |
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| T |
13075424 |
tccatctcttgaaacttatttggttttcttccatcaaatattccaatatcaacattctcttgaaacttttgatttataatttccttctcaattctgtctc |
13075523 |
T |
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| Q |
500 |
tagttgtgtctccctcaaaaggttcatttggttcaa |
535 |
Q |
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| T |
13075524 |
tagttgtgtctccctcaaaaggctcatttggttcaa |
13075559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 400 - 535
Target Start/End: Original strand, 13079631 - 13079766
Alignment:
| Q |
400 |
tccatctcttgaaacatttgtgttttccttccatcaaatactccaatatcatcattctcttgaaagttttgatttgtaatttctttctcaattctgtccc |
499 |
Q |
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| T |
13079631 |
tccatctcttgaaacttatttggttttcttccatcaaatattccaatatcaacattctcttgaaacttttgatttataatttccttctcaattctatctc |
13079730 |
T |
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| Q |
500 |
tagttgtgtctccctcaaaaggttcatttggttcaa |
535 |
Q |
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| T |
13079731 |
tagtagtgtctccctcaaaaggctcatttggttcaa |
13079766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 308 - 357
Target Start/End: Original strand, 13079539 - 13079588
Alignment:
| Q |
308 |
cttcattttgtatctgctgatatttgtctccattcaatttcttcatagac |
357 |
Q |
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| T |
13079539 |
cttcattttgtatcttctcatatttttctccattcactttcttcatagac |
13079588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 357
Target Start/End: Original strand, 13075336 - 13075381
Alignment:
| Q |
312 |
attttgtatctgctgatatttgtctccattcaatttcttcatagac |
357 |
Q |
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| T |
13075336 |
attttgtatcttctcatatttttctccattcactttcttcatagac |
13075381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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