View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13124_high_9 (Length: 353)
Name: NF13124_high_9
Description: NF13124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13124_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 116; Significance: 6e-59; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 8784525 - 8784662
Alignment:
| Q |
8 |
gcagaacctgtgtcacatgggatcatttcagccttggcttgacgagtcatgtttggagttaatgcgaaaaatttaaaattgaaatctcttatatctagga |
107 |
Q |
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| T |
8784525 |
gcagaacgtgtgtcacatgggatcatttcagccttggcttgacgagtcatgtttggagttaatgcgaaaaatttaaaattgaaatctcttatatctagga |
8784624 |
T |
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| Q |
108 |
ttagagcc---ttgttgttattgtatctagtattagga |
142 |
Q |
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| T |
8784625 |
ttagagccttgttgttgttgttgtatctagtattagga |
8784662 |
T |
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Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 8790609 - 8790704
Alignment:
| Q |
16 |
tgtgtcacatgggatcatttcagccttggcttgacgagtcatgtttggagttaatgcgaaaaatttaaaattgaaatctcttatatctaggattag |
111 |
Q |
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| T |
8790609 |
tgtgccacatgggttcatttcagccttggcttgacgagtcttgtttggagttaatgcgaaaactgtaaaattggaatctcttatatctaggattag |
8790704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 109
Target Start/End: Original strand, 8777803 - 8777879
Alignment:
| Q |
33 |
tttcagccttggcttgacgagtcatgtttggagttaatgcgaaaaatttaaaattgaaatctcttatatctaggatt |
109 |
Q |
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| T |
8777803 |
tttcagccttggcgtgacgaatcatgtttagagatattgcaaaaaatataaaaatggcatctcttatatctatgatt |
8777879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 8790728 - 8790780
Alignment:
| Q |
157 |
aatctgcacaggcaagactatttatgtgcaattaaactcatcactgaactata |
209 |
Q |
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| T |
8790728 |
aatctgcacatgcaacaatgtttatgtacaattaaactaatcactgaactata |
8790780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 2539977 - 2539900
Alignment:
| Q |
32 |
atttcagccttggcttgacgagtcatgtttggagttaatgcgaaaaatttaaaattgaaatctcttatatctaggatt |
109 |
Q |
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| T |
2539977 |
atttcagccttggcgtgacgaaacatgtttggagatattgcggaaaatgtaaaaatggaatcttttatatctaggatt |
2539900 |
T |
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