View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13124_low_13 (Length: 244)
Name: NF13124_low_13
Description: NF13124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13124_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 27848319 - 27848561
Alignment:
| Q |
1 |
gaagcaggcggtggatatggtcctgatggaccaggtacgggaagtggtggatttgttcctggttacccgggtgtaggaggtggtggatttgttcctgggg |
100 |
Q |
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| T |
27848319 |
gaagcaggcggtggatatggtcctgatggaccaggtacgggaagtggtggatttgttcctggttacccgggtgtaggaggtggtggatttgttcctgggg |
27848418 |
T |
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| Q |
101 |
taggaggcggtgaatgtgtccctggttacccgtgtgaaggaagtggtggacatgttcctggtggagaagacggtggatatgttcctggtggaccgggtga |
200 |
Q |
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| T |
27848419 |
taggaggcggtgaatgtgtcccaggttacccgtgtgaaggaagtggtggacatgttcctggtggagaagacggtggatatgttcctggtggaccgggtga |
27848518 |
T |
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| Q |
201 |
aggagttggtggacatgttcctggtggaggagacggtggatat |
243 |
Q |
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| T |
27848519 |
aggagttggtggacatgttcctggtggaggagacggtggatat |
27848561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 61 - 228
Target Start/End: Original strand, 27848442 - 27848609
Alignment:
| Q |
61 |
ggttacccgggtgtaggaggtggtggatttgttcctggggtaggaggcggtgaatgtgtccctggttacccgtgtgaaggaagtggtggacatgttcctg |
160 |
Q |
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| T |
27848442 |
ggttacccgtgtgaaggaagtggtggacatgttcctggtggagaagacggtggatatgttcctggtggaccgggtgaaggagttggtggacatgttcctg |
27848541 |
T |
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| Q |
161 |
gtggagaagacggtggatatgttcctggtggaccgggtgaaggagttggtggacatgttcctggtgga |
228 |
Q |
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| T |
27848542 |
gtggaggagacggtggatatgttcctggtggaccgggtgaaggagttggtggacatgttcctggtgga |
27848609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 46 - 165
Target Start/End: Original strand, 27848490 - 27848609
Alignment:
| Q |
46 |
ggtggatttgttcctggttacccgggtgtaggaggtggtggatttgttcctggggtaggaggcggtgaatgtgtccctggttacccgtgtgaaggaagtg |
145 |
Q |
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| T |
27848490 |
ggtggatatgttcctggtggaccgggtgaaggagttggtggacatgttcctggtggaggagacggtggatatgttcctggtggaccgggtgaaggagttg |
27848589 |
T |
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| Q |
146 |
gtggacatgttcctggtgga |
165 |
Q |
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| T |
27848590 |
gtggacatgttcctggtgga |
27848609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 27848589 - 27848646
Alignment:
| Q |
172 |
ggtggatatgttcctggtggaccgggtgaaggagttggtggacatgttcctggtggaggag |
232 |
Q |
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| T |
27848589 |
ggtggacatgttcctggtggaccgggtgaaggaggtggtg---atattcctggtggaggag |
27848646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 27848658 - 27848715
Alignment:
| Q |
172 |
ggtggatatgttcctggtggaccgggtgaaggagttggtggacatgttcctggtggaggag |
232 |
Q |
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| T |
27848658 |
ggtgggtatgttcctggtggaccgggcgaaggaggtggtg---atgttcctggtgaaggag |
27848715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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