View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13124_low_16 (Length: 211)
Name: NF13124_low_16
Description: NF13124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13124_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 1e-95; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 44224408 - 44224592
Alignment:
| Q |
1 |
cccaaatgtattggcaacaatcatgtttctacccagggatgcgatggctcggaacaatcctgaagccatctgactcatgaaaaacaacacaacgaactgc |
100 |
Q |
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| T |
44224408 |
cccaaatgtattggcaacaatcatgtttctacccagggatgcgatggctcggaacaatcctgaagccatctgactcatgaaaaacaacacaacgaactgc |
44224507 |
T |
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| Q |
101 |
ttgaacatcctgccaaaaattcaagacctcacatcataagtaacacacaaatgcaaactagatagtagaagtgacattcgatact |
185 |
Q |
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| T |
44224508 |
ttgaacatcctgccaaaaattcaagacctcacatcataagtaacacacaaatgcaaactagatagtagaagtgacgttcaatact |
44224592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 44212242 - 44212426
Alignment:
| Q |
1 |
cccaaatgtattggcaacaatcatgtttctacccagggatgcgatggctcggaacaatcctgaagccatctgactcatgaaaaacaacacaacgaactgc |
100 |
Q |
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| T |
44212242 |
cccaaatgtattggcaacaatcatgtttctacccagggatgcgatggctcggaacaatcctgaagccatctgactcatgaaaaacaacacaacgaactgc |
44212341 |
T |
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| Q |
101 |
ttgaacatcctgccaaaaattcaagacctcacatcataagtaacacacaaatgcaaactagatagtagaagtgacattcgatact |
185 |
Q |
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| T |
44212342 |
ttgaacatcctgcctagaattcaagacctcacatcattagtaacatacaaatacaaactagacagtagaactgacattcaatact |
44212426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 44235223 - 44235385
Alignment:
| Q |
1 |
cccaaatgtattggcaacaatcatgtttctacccagggatgcgatggctcggaacaatcctgaagccatctgactcatgaaaaacaacacaacgaactgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
44235223 |
cccaaatgtattggcaacaatcatgtttctacccagggatgcgatggctcggaacaatcctgaagccatctgactcatgaaaaacaacacaaggaactgc |
44235322 |
T |
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| Q |
101 |
ttgaacatcctgccaaaaattcaagacctcacatcataagtaacacacaaatgcaaactagatag |
165 |
Q |
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| T |
44235323 |
ttgaacatcctgcc-aaaattcaagacctcacatcataagtaaca-tcaaatgcaaacaagatag |
44235385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 2885539 - 2885507
Alignment:
| Q |
1 |
cccaaatgtattggcaacaatcatgtttctacc |
33 |
Q |
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| T |
2885539 |
cccaaatgtattggccacaatcatgtttctacc |
2885507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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