View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13124_low_5 (Length: 575)
Name: NF13124_low_5
Description: NF13124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13124_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 7 - 559
Target Start/End: Complemental strand, 25825293 - 25824741
Alignment:
| Q |
7 |
ctgagaagaagtgttttaattcagaagcaggtgaattgttgaaggcaaagaattgcaaggaagttgtagttggtgaaatgctgaagaagagaaggacgag |
106 |
Q |
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|||| |||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
25825293 |
ctgaaaagaagtgttttgattcagaagcaggtgagttgttgaaggcaatgaattgcaaggaagttgtagttggtgaaaggctgaagaagagaaggacgag |
25825194 |
T |
|
| Q |
107 |
gaagaagcgaagaaattgttatacagaacagaagatagaaactgaatgcaaatcagatgatttaagtcctgtttctgttcttgaatttgagcgcaagtct |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25825193 |
gaagaagcgaagaaattgttatacagaacagaagatagaaactgaatgcaaatcagatgatttaagtcctgtttctgttcttgaatttgagcgcaagtct |
25825094 |
T |
|
| Q |
207 |
tgtgtagcaggtttgtttcttttgcgaatttgatgtgttcaacttttttctgttttctagctgcaattgatgcgtcgtgatctttcgtattaagttcatg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25825093 |
tgtgtagcaggtttgtttcttttgcgaatttgatgtgttcaacttttttctgatttctagctgcaattgatgcgtcgtgatctttcgtattaagttcatg |
25824994 |
T |
|
| Q |
307 |
tttaaatcgactacgagtttgatgaaatcacagtgcgccgactggattttaatcatacgctacactaagtataatcatggtgtcactgcgactttgtaaa |
406 |
Q |
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|||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
25824993 |
tttaaatcaactacgagtttgatgaaatcacagtgtgccgatcggattttaatcatacgctaaactaagtataatcatggtgtcactgcgattttgtaaa |
25824894 |
T |
|
| Q |
407 |
attcagtgtcatttcaaacatgcactaagtatagtctttatcaaacgaggctgatccaacctcaattgcaatcacattgcaatcggaaagacataaaaaa |
506 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
25824893 |
attcagtgtcatttcaaacatgcactaagcatagtctttatcaaatgaggctgatccaacctcaattgcaatcacattgcgatcggaaagacataaaaaa |
25824794 |
T |
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| Q |
507 |
tcttaatgtcgtggactagattgccgcaacagaccttatcttataacattgtg |
559 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25824793 |
tcttaatgtcgtggactagattgccgcaacagaccttatcttataacattgtg |
25824741 |
T |
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