View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13124_low_6 (Length: 475)
Name: NF13124_low_6
Description: NF13124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13124_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 16 - 471
Target Start/End: Complemental strand, 27867482 - 27867031
Alignment:
| Q |
16 |
caatagtgaaacttgctctttagcttattagcatgtcc--ttttctgtatgaaataatggatgttataaattttctgatgattgaaaaaactagtcattt |
113 |
Q |
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| T |
27867482 |
caatagtgaaacttgccctt-agcttagtagtatgtccacttttcgggatgaaatgata-atgttataaattttctgatgattgaaaaaattagtcattt |
27867385 |
T |
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| Q |
114 |
gataggtnnnnnnnnnnnnngatacatttatgaatagtttaaacgaaggataaaattgaatgaaatgaaacaatcgttacaccaaaacttgacaactcta |
213 |
Q |
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| T |
27867384 |
gattggtataaaaaa-----gatacaattatgaatagtttaaacaaaagataaaattgaatgaaatgaaaccatcgttacaccaaaacttgacaactcta |
27867290 |
T |
|
| Q |
214 |
caaatttaaccaatagatttgacgcaacacaaatttaatgaaacttctgtttctatgattacacgagatgcattacctacatgacgactctacaaattgt |
313 |
Q |
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|||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27867289 |
caaatttaactaatagatttgacgcgacacaaatttaatgaaacttttgtttctatgattacacgagatgcattacctacatgacgactctacaaattgt |
27867190 |
T |
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| Q |
314 |
gtctaggaagctactcgttcgttaccagtgtgctagctacaacgtgtgaaacagtacgcagaca-tgcaaacttaacttgtccatctccagtatctgcca |
412 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
27867189 |
gtctaggaagctactcgttcattaccagtgtgctagctacaacgtgtgaaacagtacgcagacattgcaaacttaactcgtccatctccagtatctgcca |
27867090 |
T |
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| Q |
413 |
aacaacaaacctatagatgacagttagaaactgtcattaatcaaatgtatgggaggcat |
471 |
Q |
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| T |
27867089 |
aacaacaaacctatagatgacagttagcaactgtcattaatcaaatgtatgggaggcat |
27867031 |
T |
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