View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13124_low_7 (Length: 452)
Name: NF13124_low_7
Description: NF13124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13124_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 17 - 440
Target Start/End: Original strand, 43960050 - 43960481
Alignment:
| Q |
17 |
aatttactgggaatatatctgttactggaaatttcttatcacgtattcttaagtgtgataagaagcaaaggagattttgtttt-cttttctccataacag |
115 |
Q |
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| T |
43960050 |
aatttactgggaatatatctgttactggaaatttcttatcacgtattcttaagtgtgataagaagcaaaggagattttttttttcttttctccataacag |
43960149 |
T |
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| Q |
116 |
atacgtgatcaatatccttcnnnnnnnnnnn---gatacatgatcaataagannnnnnnnnnn---aggcaataagatagagcttgatgatatgaaaatt |
209 |
Q |
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| T |
43960150 |
atacgtgatcaatatccttcaaaaaaaaaataaagatacatgatcaataagatttttttttttttgaggcaataagatagagcttgatgatatgaaaatt |
43960249 |
T |
|
| Q |
210 |
gnnnnnnnnagtnnnnnnnncttgattttaaaattggcatcttaagaggtgagagtaaatgtttt-ttcttcttttgaccgaagatgagagtaatttatc |
308 |
Q |
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| T |
43960250 |
gttttttttagtaaaaaaaacttgattttaaaattggcatcttaagaggtgagagtaagtttttttttcttcttttgaccgaagatgagagtaatttatc |
43960349 |
T |
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| Q |
309 |
aagtaaataaattgatcgctcctattttatcattattatagtgacagtgattttgccttgtgacgttgagagactatgaataaaaacacttcccatacca |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43960350 |
aagtaaataaattgatcgctcctattttatcattattatagtgacagtgattttgccttgtgacgttgagagactatgaataagaacacttcccatacca |
43960449 |
T |
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| Q |
409 |
aacaaattccttacgtatcccgttggcatatt |
440 |
Q |
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| T |
43960450 |
aacaaattccttacgtatcccgttggcatatt |
43960481 |
T |
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