View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13124_low_8 (Length: 436)
Name: NF13124_low_8
Description: NF13124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13124_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 18 - 428
Target Start/End: Original strand, 40633309 - 40633714
Alignment:
| Q |
18 |
agaagggtgatccatgcattcaaagttggtttatctcttactcttgtatcattgctttatatattggagccactctttaaagggattggccaaaatgcta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40633309 |
agaagggtgatccatgcattcaaagttggtttatctcttactcttgtatcattgctttatatattggagccactctttaaagggattggccaaaatgcta |
40633408 |
T |
|
| Q |
118 |
tttgggctgtcatgactgtcgtagtggttttcgagttcactgcaggtataaaatagtcttgttttgttttgtactttttcatcccatgattttggcgaga |
217 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40633409 |
tttgggctgtcatgactgtcgtggtggttttcgagttcactgcaggtataaaatagtc-----ttgttttgtactttttcatcccatgattttggcgaga |
40633503 |
T |
|
| Q |
218 |
aaatataaataaatgcgaccaataaagcaacaattgtggtttcggctgcaattcaaaactatgatagaaacagtatagtaacacagacacatagtttatt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40633504 |
aaatataaataaatgcgaccaataaagcaacaattgtggttttggctgcaatttaaaactatgatagaaacagtatagtaacacagacacatagtttatt |
40633603 |
T |
|
| Q |
318 |
gatgactttaatttgtaannnnnnnatggcaggggcaactttatgcaaagggctgaatagaggattggggacattattagcaggattattggcatttctt |
417 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40633604 |
gatgactttaatttgtaatttttttatggcaggggcaactttatgcaaagggctgaatagaggattggggacattattagcaggattattggcatttctt |
40633703 |
T |
|
| Q |
418 |
cttgatgatgt |
428 |
Q |
| |
|
|||||| |||| |
|
|
| T |
40633704 |
cttgattatgt |
40633714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 40644923 - 40645072
Alignment:
| Q |
18 |
agaagggtgatccatgcattcaaagttggtttatctcttactcttgtatcattgctttatatattggagccactctttaaagggattggccaaaatgcta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||| | | | |||||||||||||||||||||| |||||| | ||||||| |
|
|
| T |
40644923 |
agaagggtgatccatgcattcaaagttggtttatctctcactcttgtatcattattatttctattggagccactctttaaaggaattggcgagaatgcta |
40645022 |
T |
|
| Q |
118 |
tttgggctgtcatgactgtcgtagtggttttcgagttcactgcaggtata |
167 |
Q |
| |
|
|||||||||||||||| ||||| ||||| ||||| ||||| ||||||||| |
|
|
| T |
40645023 |
tttgggctgtcatgaccgtcgtcgtggtgttcgaattcaccgcaggtata |
40645072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 343 - 428
Target Start/End: Original strand, 40645322 - 40645407
Alignment:
| Q |
343 |
atggcaggggcaactttatgcaaagggctgaatagaggattggggacattattagcaggattattggcatttcttcttgatgatgt |
428 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||| |
|
|
| T |
40645322 |
atggcaggggcaactttatgcaaagggatgaatagaggattggggacattattagcagggttattgtcatttcttcttgattatgt |
40645407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 346 - 414
Target Start/End: Complemental strand, 4782291 - 4782223
Alignment:
| Q |
346 |
gcaggggcaactttatgcaaagggctgaatagaggattggggacattattagcaggattattggcattt |
414 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||||||| | ||||| ||||||||||||||| |
|
|
| T |
4782291 |
gcaggggcaactttatgcaaagggcttaacagaggattggggacactgttagctggattattggcattt |
4782223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 4782951 - 4782914
Alignment:
| Q |
18 |
agaagggtgatccatgcattcaaagttggtttatctct |
55 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
4782951 |
agaagggttatccatgcattcaaagttggtttgtctct |
4782914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 51850188 - 51850336
Alignment:
| Q |
18 |
agaagggtgatccatgcattcaaagttggtttatctcttactcttgtatcattgctttatatattggagccactctttaaagggattggccaaaatgcta |
117 |
Q |
| |
|
||||||||| ||||| | || ||||||||| | || | || |||||||| ||| | ||| || |||||||| | || |||||||| || ||||||||| |
|
|
| T |
51850188 |
agaagggtggtccattctttgaaagttggtcttgctttgacacttgtatctttgttgtatctaatggagccattgttcaaagggataggggaaaatgcta |
51850287 |
T |
|
| Q |
118 |
tttgggctgtcatgactgtcgtagtggttttcgagttcactgcaggtat |
166 |
Q |
| |
|
| ||||||||||||||||| || ||||| | ||||||||||||||||| |
|
|
| T |
51850288 |
tgtgggctgtcatgactgtggttgtggtcatggagttcactgcaggtat |
51850336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 348 - 413
Target Start/End: Original strand, 51850427 - 51850492
Alignment:
| Q |
348 |
aggggcaactttatgcaaagggctgaatagaggattggggacattattagcaggattattggcatt |
413 |
Q |
| |
|
||||| ||| ||||||||||| || |||||||||||||| || || |||||||||| ||||||||| |
|
|
| T |
51850427 |
agggggaaccttatgcaaaggactaaatagaggattgggaactttgttagcaggatcattggcatt |
51850492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University