View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13125_high_10 (Length: 538)
Name: NF13125_high_10
Description: NF13125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13125_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 10 - 522
Target Start/End: Complemental strand, 39378336 - 39377841
Alignment:
| Q |
10 |
aagaaaatcttgaagctttgcattctttatctcatggcttgaactaatccctatgtcactctctctagttcctgcggtcgtgttgtgtttctgattaatg |
109 |
Q |
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| T |
39378336 |
aagaaaatcttgaagctttgcattctttatctcatggcttgaactaatccctatgtcactctctctagttcctgcagtcgtgttgtgtttctgattaata |
39378237 |
T |
|
| Q |
110 |
ttgacaacactcccatcaattgcacgaaatctttgatcatctcttgttcctacgatcatgttgtgttgaagattaatgttaacacttccatcgattgtac |
209 |
Q |
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| T |
39378236 |
ttgacaacactcccatcaattgcacgaaatctttgatcatctcttgttcctacgatcatgttgtgttgaagattaatgttaacacttccatcgattgtac |
39378137 |
T |
|
| Q |
210 |
tagatcttcgatggtatcttgttccccgtttcttaccaatgttgacaacactgccatcagctgtactagatcttcgatcgtctcttgttccagccatcgt |
309 |
Q |
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| T |
39378136 |
tagatcttcgatggtatcttgttccccgtttcttacc-----------------catcagctgtactagatcttcgatcgtctcttgttccagccatcgt |
39378054 |
T |
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| Q |
310 |
gttgcgttgctggtcaatattgacaacactgccatcaattgtactagatctttgatggcctcttgctcttgcggttgtgttgtgttgatgatcaatattg |
409 |
Q |
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| T |
39378053 |
gttgcgttgctggtcaatattgacaacactgccatcaattgtactagatctttgatggcctcttgctcttgcggttgtgttgtgttgatgatcaatattg |
39377954 |
T |
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| Q |
410 |
acaacacagtcatcaattgaactagatcttccaaggatatgtttaaaattaccccaaaaataaccacctagactttttctcttgatgcattgtgtgtgac |
509 |
Q |
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| T |
39377953 |
acaacacagtcatcaattgaactagatcttccaaggatatgtttaaaattaccccaaaaataaccacctagactctttctcttgatgcattgtgtgtgac |
39377854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 10 - 520
Target Start/End: Complemental strand, 39395694 - 39395180
Alignment:
| Q |
10 |
aagaaaatcttgaagctttgcattctttatctcatggcttgaactaatcc-ctatgtcactctctctagttcctgcggtcgtgttgtgtttctgattaat |
108 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||| |||||||||||| | |||| | |||||| |||||||||||| |||||||||| ||||| ||| |
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| T |
39395694 |
aagaaagtcttgaagctttgcattctttatctcatggtttgaactaatccgcgatgtaattctctccagttcctgcggttgtgttgtgttgctgatcaat |
39395595 |
T |
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| Q |
109 |
gttgacaacactcccatcaattgcacgaaatctttgatcatctcttgttcctacgatcatgttgtgttgaagattaat---gttaacacttccatcgatt |
205 |
Q |
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| T |
39395594 |
attgacaactctcccatcaattgcaccagattttcgatcatctcttgttcctgcgatcattttatgttgctgatcaatattgttaatacttccatcaatt |
39395495 |
T |
|
| Q |
206 |
gtactagatcttcgatggtatcttgttccccgtttcttaccaatgttgacaacactgccatcagctgtactagatcttcgatcgtctcttgttccagcca |
305 |
Q |
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| T |
39395494 |
gtactagatcttcgatggtaacttgttccgtgtttctgatcaatattgacaacaatgccatcggttgtaccagatctttgatcgtctctttttcctgcca |
39395395 |
T |
|
| Q |
306 |
tcgtgttgcgttgctggtcaatattgacaacactgccatcaattgtactagatctttgatggcctcttgctcttgcggttgtgttgtgttgatgatcaat |
405 |
Q |
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|| ||||||||||||| ||||||||| ||||||||||||| |||| |||||||||| ||||| |||||||| || ||||| ||||||||| |||||| | |
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| T |
39395394 |
tcatgttgcgttgctgatcaatattggcaacactgccatcgattgaactagatcttcgatggtttcttgctcctgtggttgcgttgtgttgttgatcagt |
39395295 |
T |
|
| Q |
406 |
attgacaacacagtcatcaattgaactagatcttccaaggatatgtttaaaattaccccaaaaataaccacctagactttttctcttgatgcattgtgtg |
505 |
Q |
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||| ||| ||||| |||||| | |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
39395294 |
attaacagcacagccatcaactaaactagatcttccaaggatatgtttaaagccaccccaaaaataaccaccaagactttttctcttgatgcattgtgtg |
39395195 |
T |
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| Q |
506 |
tgactatccttattg |
520 |
Q |
| |
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||| ||||||||||| |
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| T |
39395194 |
tgattatccttattg |
39395180 |
T |
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