View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13125_high_11 (Length: 514)
Name: NF13125_high_11
Description: NF13125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13125_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 5 - 499
Target Start/End: Complemental strand, 26856538 - 26856044
Alignment:
| Q |
5 |
gagaagcaaaggttgcaaagttttccaatcagaagcccccaatgcaaacaaatcaaaatattgtcccaccataatgaatgaaaatggcataagaaactca |
104 |
Q |
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| T |
26856538 |
gagaaacaaaggttgcaaacttttccaatcagaagcccccaatgcaaaaaaatcaaaatattgtcccaccataatgaatgaaaatggcataagaaactca |
26856439 |
T |
|
| Q |
105 |
ttcataatagtcttggtcttttgtaccattgttgctcctaaacgaggtccatcaggagtaaccaaccctaaccagaaagatccattaacaattgctatac |
204 |
Q |
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| T |
26856438 |
ttcataatagtcttggtcttttgtaccattgttgttcctaaacgaggtccatccggtgtaaccaaacccaaccagaaagacccattaacaattgctatac |
26856339 |
T |
|
| Q |
205 |
caaacatgtcagttataaatgccatcacaaaaacccctaaaataatagcaacaacaaaagattgatccacttcttctccttctggtgtttttctattaat |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
26856338 |
caaacatgtcagttataaatgccatcacaaaaacccctaaaataatagcaacaacaaaagattgatccacttcttgtccttctggtgtttttctattaat |
26856239 |
T |
|
| Q |
305 |
ccacatcattgttggcctaatacagcaaaataaaagtattgccacaactacaacagaaatcatgaaccacagagaattatctgattttatttctccttgt |
404 |
Q |
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|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
26856238 |
ccacatcattgttggcctaatacaacaaagtaaaagtattgccacaactacaacagaaatcatgaaccacaaagaattctctgattttatttctccttgt |
26856139 |
T |
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| Q |
405 |
tttcctgcttcaaatgctaaaacaccgccaattccacatgcatcgccgattaatgcggtcgataatgcaagtcgtccgacatctgagtttataag |
499 |
Q |
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|||| |||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26856138 |
cttcccgcttcaaatgctaaaacaccaccaattccaaatgcatcgccgattaacgcggtcgataatgcaagtcgtccgacatctgagtttataag |
26856044 |
T |
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