View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13125_high_12 (Length: 513)
Name: NF13125_high_12
Description: NF13125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13125_high_12 |
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| [»] scaffold0272 (1 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 398; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 14 - 497
Target Start/End: Complemental strand, 33713504 - 33713003
Alignment:
| Q |
14 |
tactatgaattcgattaagggtcctagaggttcttattgttgaaatttaggcctaactcatccaaccaaaaccgacttcgtgggattgtgttaggcccaa |
113 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33713504 |
tactattaattcgattaagggtcctagaggttcttattgttgaaatttaggcctaactcatccaaccaaaaccgacttcatgggattgtgttaggcccaa |
33713405 |
T |
|
| Q |
114 |
ccatgacttctatgacttatgtcccctccgatctttttaatgtagatgatgcgatgattttttgcgtgggtactttatctaacttaagagagatcttaag |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33713404 |
ccatgacttctatgacttatgtcccctccgatctttttaatgtagatgatgtgatgattttttgcgtgggtacttaatctaacttaagagagatcttaag |
33713305 |
T |
|
| Q |
214 |
caattattgattaattatgctagtgtttctggccatgtaaaaatagcaaatctactatctacgttgtccacatcagtaatatcagaagagccataattgt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33713304 |
caattattgattaattatgctagtgtttctggccatgtaaaaatagcaaatctactatctacgttgtccacatcagtaatatcagaagagtcataattgt |
33713205 |
T |
|
| Q |
314 |
tgaacttttgtgtttctctgagacatgtttgcatataaatgtcaagattggaagcaacattacattatatgagtggtaggacaatgga-tcattttgtgt |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||| | ||||||||| |
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| T |
33713204 |
tgaacttttgtgtttctctgagacatgtttgcatataaatgtcaagattggaaacaacattacattatatcagtggtaggacagtggatttattttgtgt |
33713105 |
T |
|
| Q |
413 |
aattggtctcaaaagt-----------------ggttggaagagttgcatttaatttcaaaattattgatagaattggaaggtcctggttccatgtttga |
495 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33713104 |
aattggtctcaaaagtggaatgttagaacttcaggttggaagagttgcatttaatttcaaaattattgatagaattggaaggtcctggtgccatgtttga |
33713005 |
T |
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| Q |
496 |
at |
497 |
Q |
| |
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|| |
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| T |
33713004 |
at |
33713003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 255 - 430
Target Start/End: Original strand, 21252111 - 21252284
Alignment:
| Q |
255 |
aatagcaaatctactatctacgttgtccacatcagtaatatcagaagagccataattgttgaacttttgtgtttctctgagacatgtttgcatataaatg |
354 |
Q |
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||||| ||||||||||||| ||||||| |||| ||||||||| |||||||| ||||||| |||||| |||||| |||||||||||||||||| |||| |
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| T |
21252111 |
aatagaaaatctactatcttcgttgtcgacataagtaatatcgtaagagccaaaattgttt--cttttgcgtttctgtgagacatgtttgcatatcaatg |
21252208 |
T |
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| Q |
355 |
tcaagattggaagcaacattacattatatgagtggtaggacaatggatcattttgtgtaattggtctcaaaagtgg |
430 |
Q |
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| T |
21252209 |
tcaagagtggaaacaacattacattatatcagtggtaggacagtggatcattttgtgtaattggtctcaacagtgg |
21252284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 21214360 - 21214300
Alignment:
| Q |
181 |
gggtactttatctaacttaagagagatcttaagcaattattgattaattatgctagtgtttct |
243 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| | | ||||||| ||||||||| |
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| T |
21214360 |
gggtactttatctaacttaagaga--tcttaagcaattatttaatgattatgcaagtgtttct |
21214300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 34 - 430
Target Start/End: Original strand, 4302 - 4700
Alignment:
| Q |
34 |
gtcctagaggttcttattgttgaaatttaggcctaactcatccaaccaaaaccgacttcgtgggattgtgttaggcccaaccatgacttctatgacttat |
133 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||| |||||||||| | ||| || || ||||||||||||| |
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| T |
4302 |
gtcctagaggttcttattgttgaaatttaggtttaactcatccttacaaaaccgactttgtggtattgtgttagactcaatcacgatttctatgacttat |
4401 |
T |
|
| Q |
134 |
gtcccctccgatctttttaatgtagatgatgcgatga-ttttttgcgtgggtactttatctaacttaagagagatcttaagcaattattgattaa----t |
228 |
Q |
| |
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|||||||||||||||||| ||| |||||||||||||| ||||||||||| |||| ||||||||| || ||||||||||| |||||||||| ||| |
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| T |
4402 |
gtcccctccgatcttttttatgcagatgatgcgatgatttttttgcgtgtgtac-ttatctaacata--agagatcttaaacaattattgaataactata |
4498 |
T |
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| Q |
229 |
tatgctagtgtttctggccatgtaaaaatagcaaatctactatctacgttgtccacatcagtaatatcagaagagccataattgttgaacttttgtgttt |
328 |
Q |
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||||||||||||||||||| |||||||| |||||||||||||||| || ||||||||||||||||||||||||||||| |||||| || | |||| |||| |
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| T |
4499 |
tatgctagtgtttctggccgtgtaaaaagagcaaatctactatcttcgctgtccacatcagtaatatcagaagagccaaaattgtcgatcctttgcgttt |
4598 |
T |
|
| Q |
329 |
ctctgagacatgtttgcatataaatgtcaagattggaagcaacattacattatatgagtggtaggacaatggatcattttgtgtaattggtctcaaaagt |
428 |
Q |
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||||||||||||||||| ||| ||||||||| ||||| |||||||||| | ||| | |||||||||||||||||| |||||||||||||||| |||||| |
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| T |
4599 |
ctctgagacatgtttgcgtatcaatgtcaagggtggaaacaacattacactttattactggtaggacaatggatcactttgtgtaattggtcttaaaagt |
4698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 476
Target Start/End: Original strand, 63980 - 64017
Alignment:
| Q |
440 |
ttgcatttaatttcaaaattatt-gatagaattggaag |
476 |
Q |
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||||||||||||||||||||||| |||||||||||||| |
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| T |
63980 |
ttgcatttaatttcaaaattattcgatagaattggaag |
64017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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