View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13125_high_16 (Length: 423)
Name: NF13125_high_16
Description: NF13125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13125_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 233 - 396
Target Start/End: Original strand, 18499121 - 18499284
Alignment:
| Q |
233 |
ctaatgttgaggtatcagaaacagttgttgaggaatagacataacataacattgaaaaatgcaagactcttgaagtggaagttgaaaatggtaagaatta |
332 |
Q |
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| T |
18499121 |
ctaatgttgaggtatcagaaacagttgttgaggaatagacataacataacattgaaaaatgcaagactcttgaagtggaagttgaaaatggtgagaatta |
18499220 |
T |
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| Q |
333 |
agaaaaagaaaattttcaagagctcatcaaagtgttagaaacgtttaaagttaacatgcccatc |
396 |
Q |
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| T |
18499221 |
agaaaaagaaaattttcaagagctcatcaaagtgttagaaaagtttaaagttaacatgcccatc |
18499284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 15 - 147
Target Start/End: Original strand, 18498903 - 18499035
Alignment:
| Q |
15 |
tttaaaaaaggaaaggaaggagtacccatgaaggatttgagtaaagaggtaaaagcaagtcaggttgaaactagagttgtaggtgaaggtgaatctacca |
114 |
Q |
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| T |
18498903 |
tttaaaaaaggaaaggaaggagtacccatgaaggatttgagtaaagaggtaaaagcaagtcaggttgaacctagagttgtaggtgaaggtgaatctacca |
18499002 |
T |
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| Q |
115 |
cttccgagaaaatacaagtaccaacaatggaag |
147 |
Q |
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| T |
18499003 |
cttccaagaaaatacaagtaccaacaatggaag |
18499035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 383
Target Start/End: Original strand, 14419456 - 14419604
Alignment:
| Q |
235 |
aatgttgaggtatcagaaacagttgttgaggaatagacataacataacattgaaaaatgcaagactcttgaagtggaagttgaaaatggtaagaattaag |
334 |
Q |
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| T |
14419456 |
aatgttgaagtatcagaaacaatagttgaggatgatacacaacatgactttaaagaaggaaagactcttgacgtgggaatagaagttggcgagcatcaag |
14419555 |
T |
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| Q |
335 |
aaaaagaaaattttcaagagctcatcaaagtgttagaaacgtttaaagt |
383 |
Q |
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| T |
14419556 |
aaaatgaaaatttttaagagctcatcaaagctttagaaaagtttaaagt |
14419604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 395
Target Start/End: Original strand, 24839527 - 24839589
Alignment:
| Q |
333 |
agaaaaagaaaattttcaagagctcatcaaagtgttagaaacgtttaaagttaacatgcccat |
395 |
Q |
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| T |
24839527 |
agaaaaagaaaattttcaagatctcatcaaagctttagaaaagtataaagctaatatacccat |
24839589 |
T |
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