View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13125_high_17 (Length: 416)
Name: NF13125_high_17
Description: NF13125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13125_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 60 - 403
Target Start/End: Complemental strand, 43626989 - 43626646
Alignment:
| Q |
60 |
cttgaagtaattggtacatatcttttcaccctcgtgtatcatcaaataatcgtgtatcttcaaatgatcaaataatcttatatgcgtttcttgcaattgg |
159 |
Q |
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| T |
43626989 |
cttgatgtaattggtacatatcttttcaccctcgtgtatcatcaaataatcgtgtatcttcaaatgatcaaataatcctatatgcgtttcttgcaattgg |
43626890 |
T |
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| Q |
160 |
gtgagactaacactcacacatgaaatcagcatctcatcttcaatttgttcttttcacatatgacacatataaaaaggtatgtgcataattcatccctgag |
259 |
Q |
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| T |
43626889 |
gtgagactaacactcacacatgaaatcagcatctcatcttcaatttgttcttttcacatatgacacatataaaaaggtatgtgcataattcatccctgag |
43626790 |
T |
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| Q |
260 |
ttgggtctaccaaatattcctttttccagaataaaaagttgcccacggatgaatatggtaggggtatatgcttttctttttagaggatagtatccttaaa |
359 |
Q |
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| T |
43626789 |
ttgggtctaccaaatattcctttttccaaaataaaaagttgcccacggatgaatatggtaggggtatatgcttttctttttagaggatagtatccttaaa |
43626690 |
T |
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| Q |
360 |
atctcacagtcacaacattcatcttttgaattataatatttttg |
403 |
Q |
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| T |
43626689 |
atctcacagtcccaacattcatcttttgaattataatatttttg |
43626646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 43627071 - 43627039
Alignment:
| Q |
36 |
tgtgaaaatttaaaattaaaggtgcttgaagta |
68 |
Q |
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| T |
43627071 |
tgtgaaaatttaaaattaaaggtgcttgaagta |
43627039 |
T |
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