View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13125_high_18 (Length: 391)
Name: NF13125_high_18
Description: NF13125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13125_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 113 - 327
Target Start/End: Original strand, 12999029 - 12999243
Alignment:
| Q |
113 |
gaatggctgataaaagtgtatataatgcaaatgctacatgtactcgaaagggaattaaactaaaatgcacaacacatgcatgcatatatagctttttaat |
212 |
Q |
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| T |
12999029 |
gaatggctgataaaagtgtatataatgcaaatgttacatgtactcgaaagggaattaaactaaaatgcacaacacatgcatgcatatatagctttttaat |
12999128 |
T |
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| Q |
213 |
tagggtttcaaagatgtttttctttatcatacttttcttcgtatgttcctaattgatgaacatgattagttgattagggcaaaggagcagtgatggcaat |
312 |
Q |
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| T |
12999129 |
tagggtttcaaagatgtttttctttatcatacttttcttcgtatgttcctaattgatgaacatgattagttgattagggcaaaggagcagtgatggcaat |
12999228 |
T |
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| Q |
313 |
tggagatgaacgtcc |
327 |
Q |
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| T |
12999229 |
tggagatgaacgtcc |
12999243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 6 - 102
Target Start/End: Original strand, 12998874 - 12998970
Alignment:
| Q |
6 |
atgtataaattgattcaaaggtggaatattgtagttgagttgaaacatcattcggtatgtaatgtaattgattcaaagatagaatagaacatatata |
102 |
Q |
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| T |
12998874 |
atgtataaattgattcaaaggtggaatattgtagttgagttgaaacaccattcggtatgtaatgtaattgattcaaagatagaatagaacatatata |
12998970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 372
Target Start/End: Original strand, 12999622 - 12999675
Alignment:
| Q |
322 |
acgtccatggtaccaagcaa--aatcaatggcatattgtc-aaaaggtagttga |
372 |
Q |
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| T |
12999622 |
acgtccatggtaccaagcaaataattaatggcatattgtcaaaaaggtagttga |
12999675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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