View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13125_high_20 (Length: 374)
Name: NF13125_high_20
Description: NF13125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13125_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 139 - 249
Target Start/End: Original strand, 10314528 - 10314638
Alignment:
| Q |
139 |
aatcaatgggcttttagggaggaatcgatggtcggcgattgatggtttgcacaaatgggtaggcgatcagattcaaagaggagatgggttaatttgtttg |
238 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10314528 |
aatcaatgggcttttagggaggaatcaatggtcggcgattgatggtttgcacaaatgggtaggcgatcagattcaaagaggagatgggttaatttgtttg |
10314627 |
T |
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| Q |
239 |
atttcacaaga |
249 |
Q |
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||||||||||| |
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| T |
10314628 |
atttcacaaga |
10314638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 139 - 249
Target Start/End: Original strand, 15828872 - 15828982
Alignment:
| Q |
139 |
aatcaatgggcttttagggaggaatcgatggtcggcgattgatggtttgcacaaatgggtaggcgatcagattcaaagaggagatgggttaatttgtttg |
238 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15828872 |
aatcaatgggcttttagggaggaatcaatggtcggcgattgatggtttgcacaaatgggtaggcgatcagattcaaagaggagatgggttaatttgtttg |
15828971 |
T |
|
| Q |
239 |
atttcacaaga |
249 |
Q |
| |
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||||||||||| |
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| T |
15828972 |
atttcacaaga |
15828982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 292 - 353
Target Start/End: Original strand, 10315025 - 10315086
Alignment:
| Q |
292 |
taagaattctacgttagcgcttttgatacagaatgctataatcagtttgcctcataaatagc |
353 |
Q |
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|||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||| |
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| T |
10315025 |
taagaattctacgttagcgcttttgacacaaaacgctataatcagtttgcctcataaatagc |
10315086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 292 - 353
Target Start/End: Original strand, 15829314 - 15829375
Alignment:
| Q |
292 |
taagaattctacgttagcgcttttgatacagaatgctataatcagtttgcctcataaatagc |
353 |
Q |
| |
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|||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||| |
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| T |
15829314 |
taagaattctacgttagcgcttttgacacaaaacgctataatcagtttgcctcataaatagc |
15829375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 59
Target Start/End: Original strand, 15828826 - 15828861
Alignment:
| Q |
24 |
aaccaaccaaccataaaagcaatcgatgagaaagat |
59 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
15828826 |
aaccaaccaaccataaaagcaatcgatgagaaagat |
15828861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 59
Target Start/End: Original strand, 10314482 - 10314517
Alignment:
| Q |
24 |
aaccaaccaaccataaaagcaatcgatgagaaagat |
59 |
Q |
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|||||||||| ||||||||||||||||||||||||| |
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| T |
10314482 |
aaccaaccaagcataaaagcaatcgatgagaaagat |
10314517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 9e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 139 - 249
Target Start/End: Original strand, 16428708 - 16428818
Alignment:
| Q |
139 |
aatcaatgggcttttagggaggaatcgatggtcggcgattgatggtttgcacaaatgggtaggcgatcagattcaaagaggagatgggttaatttgtttg |
238 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
16428708 |
aatcaatgggcttttagggaggaatcaatggtcagcgattgatggtttgcacaaatgggtaggtgatcagattcaaagaggagatgggttaatttgtttg |
16428807 |
T |
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| Q |
239 |
atttcacaaga |
249 |
Q |
| |
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||||||||||| |
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| T |
16428808 |
atttcacaaga |
16428818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 59
Target Start/End: Original strand, 16428662 - 16428697
Alignment:
| Q |
24 |
aaccaaccaaccataaaagcaatcgatgagaaagat |
59 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
16428662 |
aaccaaccaaccataaaagcaatcgatgagaaagat |
16428697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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