View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13125_high_38 (Length: 237)
Name: NF13125_high_38
Description: NF13125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13125_high_38 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 41833323 - 41833545
Alignment:
| Q |
1 |
gatatgatattattttttgtgtgtacgccatatgcacatttaagcacattggaaatcatgtgggactttccttgagcaaacattgagaagcaagcttagt |
100 |
Q |
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| T |
41833323 |
gatatgatattattttttgtgtgtacgccatatgcacatttaagcacattgaaaatcatgtgggactttccttgagcaaacattgagaagcaagcttagt |
41833422 |
T |
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| Q |
101 |
gaaattggaaggttgagattaatgcccaaaatgttagctttaagggcagtgcaaaggcatgctgcagcctcaagatcaacaaggccatttaggagtgagc |
200 |
Q |
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| T |
41833423 |
gaaattggaaggttgagattaatgcccaaaatgttagctttaagggcagtgcaaaggcatgctgcagcctcgagatcaacaaggccatttaggagtgagc |
41833522 |
T |
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| Q |
201 |
aacaaggggttactggtggttta |
223 |
Q |
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| T |
41833523 |
aacaaggggttactggtggttta |
41833545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 47 - 195
Target Start/End: Original strand, 41846962 - 41847110
Alignment:
| Q |
47 |
cattggaaatcatgtgggactttccttgagcaaacattgagaagcaagcttagtgaaattggaaggttgagattaatgcccaaaatgttagctttaaggg |
146 |
Q |
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| T |
41846962 |
cattggaaatcacgtggtgcttgctttgagcaaacattgagaagcaagctaagtgagataggaaggttgagattgatccccaaaatgttagctttaaggg |
41847061 |
T |
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| Q |
147 |
cagtgcaaaggcatgctgcagcctcaagatcaacaaggccatttaggag |
195 |
Q |
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| T |
41847062 |
cagtgcaaagacacacagcagcttcaagatcaacaaggccatttaggag |
41847110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 134 - 208
Target Start/End: Complemental strand, 9738691 - 9738617
Alignment:
| Q |
134 |
ttagctttaagggcagtgcaaaggcatgctgcagcctcaagatcaacaaggccatttaggagtgagcaacaaggg |
208 |
Q |
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|||||||||||||||||||||||||| || ||||| ||||||||| |||| || | | |||||||||||||||| |
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| T |
9738691 |
ttagctttaagggcagtgcaaaggcaagcagcagcttcaagatcagcaagaccttgaatgagtgagcaacaaggg |
9738617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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