View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13125_high_42 (Length: 220)

Name: NF13125_high_42
Description: NF13125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13125_high_42
NF13125_high_42
[»] chr8 (13 HSPs)
chr8 (1-220)||(37927412-37927631)
chr8 (83-214)||(45524897-45525028)
chr8 (71-183)||(24683630-24683742)
chr8 (102-178)||(9008982-9009058)
chr8 (110-206)||(28485429-28485525)
chr8 (72-218)||(29011079-29011223)
chr8 (98-206)||(9953705-9953813)
chr8 (66-133)||(16983502-16983569)
chr8 (71-178)||(32022852-32022959)
chr8 (76-211)||(34366707-34366842)
chr8 (71-124)||(6098787-6098840)
chr8 (173-214)||(38091399-38091440)
chr8 (88-164)||(31703826-31703902)
[»] chr2 (13 HSPs)
chr2 (66-213)||(19953424-19953571)
chr2 (66-214)||(19193507-19193655)
chr2 (98-214)||(42669766-42669882)
chr2 (71-190)||(18949204-18949323)
chr2 (66-214)||(6420459-6420605)
chr2 (66-206)||(31494242-31494382)
chr2 (159-214)||(20458939-20458994)
chr2 (71-121)||(45554679-45554729)
chr2 (83-206)||(37077996-37078119)
chr2 (131-220)||(385050-385139)
chr2 (76-121)||(11826148-11826193)
chr2 (66-206)||(30706305-30706445)
chr2 (89-133)||(33678144-33678188)
[»] chr7 (15 HSPs)
chr7 (66-220)||(46994367-46994521)
chr7 (89-214)||(23434724-23434848)
chr7 (71-211)||(2911792-2911932)
chr7 (66-213)||(4089983-4090128)
chr7 (66-148)||(20954773-20954855)
chr7 (98-214)||(24845466-24845582)
chr7 (98-220)||(44350177-44350299)
chr7 (83-148)||(25003454-25003519)
chr7 (127-213)||(33852535-33852621)
chr7 (98-212)||(29462040-29462152)
chr7 (131-206)||(39523611-39523686)
chr7 (71-121)||(37489914-37489964)
chr7 (71-124)||(6580012-6580065)
chr7 (155-220)||(32721020-32721085)
chr7 (66-131)||(48374444-48374509)
[»] chr4 (17 HSPs)
chr4 (74-214)||(5994880-5995020)
chr4 (66-220)||(51339969-51340122)
chr4 (66-204)||(51904620-51904758)
chr4 (98-214)||(5027432-5027547)
chr4 (66-219)||(27654502-27654653)
chr4 (88-214)||(56328706-56328832)
chr4 (98-214)||(8567802-8567918)
chr4 (133-214)||(3976404-3976485)
chr4 (139-214)||(8586545-8586620)
chr4 (72-206)||(25719123-25719257)
chr4 (66-167)||(19677329-19677430)
chr4 (66-150)||(5545670-5545754)
chr4 (66-121)||(8109076-8109131)
chr4 (71-121)||(39471277-39471327)
chr4 (99-148)||(32846185-32846234)
chr4 (169-209)||(16318437-16318477)
chr4 (75-147)||(16318893-16318965)
[»] chr5 (9 HSPs)
chr5 (71-220)||(25002015-25002164)
chr5 (98-220)||(7585008-7585130)
chr5 (75-218)||(36325462-36325604)
chr5 (71-183)||(41034439-41034551)
chr5 (139-214)||(10299913-10299988)
chr5 (66-200)||(6529878-6530012)
chr5 (66-133)||(28490727-28490794)
chr5 (71-121)||(30325884-30325934)
chr5 (98-151)||(5630585-5630638)
[»] chr6 (4 HSPs)
chr6 (71-183)||(6163528-6163640)
chr6 (83-214)||(26170912-26171043)
chr6 (88-214)||(25326859-25326985)
chr6 (88-214)||(26159394-26159520)
[»] chr1 (18 HSPs)
chr1 (83-210)||(25010025-25010151)
chr1 (71-219)||(28274811-28274957)
chr1 (71-214)||(18473677-18473820)
chr1 (71-148)||(4817181-4817257)
chr1 (98-190)||(7549637-7549730)
chr1 (114-219)||(15741860-15741965)
chr1 (66-190)||(18157090-18157212)
chr1 (66-215)||(21970282-21970431)
chr1 (76-190)||(40125857-40125967)
chr1 (78-164)||(39150023-39150110)
chr1 (125-219)||(14340984-14341076)
chr1 (104-183)||(33234465-33234544)
chr1 (170-211)||(18953272-18953313)
chr1 (72-121)||(19101612-19101661)
chr1 (172-217)||(44807130-44807175)
chr1 (104-176)||(2592970-2593042)
chr1 (76-124)||(28941839-28941887)
chr1 (130-206)||(31602130-31602206)
[»] chr3 (16 HSPs)
chr3 (102-203)||(10798317-10798418)
chr3 (104-220)||(11832146-11832261)
chr3 (83-214)||(214063-214193)
chr3 (88-183)||(7791887-7791982)
chr3 (108-214)||(22813318-22813424)
chr3 (74-183)||(53655419-53655528)
chr3 (71-220)||(34706591-34706740)
chr3 (98-206)||(8475190-8475298)
chr3 (66-121)||(20791416-20791471)
chr3 (100-207)||(44225873-44225980)
chr3 (66-121)||(52123961-52124016)
chr3 (98-151)||(21175582-21175635)
chr3 (98-211)||(38169029-38169142)
chr3 (72-121)||(44844102-44844151)
chr3 (98-183)||(52223459-52223544)
chr3 (66-165)||(43657830-43657927)
[»] scaffold0005 (1 HSPs)
scaffold0005 (66-219)||(296861-297012)
[»] scaffold0238 (1 HSPs)
scaffold0238 (101-190)||(15241-15330)
[»] scaffold0886 (1 HSPs)
scaffold0886 (116-190)||(3297-3371)


Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 37927412 - 37927631
Alignment:
Q  1 ctagctttgcgtcatttcttttgaatgatgcaactatgcaaagtcaaccagagaatgagaataagagcagcactctctttttaacattctctccaatact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  37927412 ctagctttgcgtcatttcttttgaatgatgcaactatgcaaagtcaaccagagaatgagaacaagagcagcactctctttttaacattctctccaatact 37927511  T
Q  101 cacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagagaatg 200  Q
    || |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37927512 catttttttattggcttaaatcatagtgagtctcacattttggaaatagatactacttaaagtgatgagtcatacattggtttcatccaacaagagaatg 37927611  T
Q  201 agtgttgaagagagagtgtc 220  Q
    ||||||||||||||||||||    
T  37927612 agtgttgaagagagagtgtc 37927631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 83 - 214
Target Start/End: Original strand, 45524897 - 45525028
Alignment:
Q  83 aacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtt 182  Q
    |||| ||||||||| ||||||||||| |||||||||||| || ||| || ||||| ||||||||||| | | ||| |||||| || ||||||||||| ||    
T  45524897 aacactctctccaacactcactttttaattggcttaaatcatggtgggtttcacactttggaaatgggttccactcaaagtggtgggtcatacattgatt 45524996  T
Q  183 tcatccaacaagagaatgagtgttgaagagag 214  Q
    | |||||| |||| ||||||||||||||||||    
T  45524997 ttatccaataagaaaatgagtgttgaagagag 45525028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 71 - 183
Target Start/End: Complemental strand, 24683742 - 24683630
Alignment:
Q  71 cactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagt 170  Q
    ||||||||||| |||| | ||||||| ||||||||| | |||||||||||| ||  || |||||||||||||||||||| | | |||||||||| || ||    
T  24683742 cactctcttttcaacactatctccaacactcactttctgattggcttaaatcatgatgggtctcacattttggaaatgggttccacttaaagtggtgggt 24683643  T
Q  171 catacattggttt 183  Q
    || ||||||||||    
T  24683642 cacacattggttt 24683630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 9008982 - 9009058
Alignment:
Q  102 acttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacatt 178  Q
    |||||||||||||||||||| |  |||||||||||| |||| |||||| | | ||||||||||||| | ||||||||    
T  9008982 acttttttattggcttaaatcaatgtgagtctcacactttgaaaatgggttccacttaaagtgatgggacatacatt 9009058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 206
Target Start/End: Original strand, 28485429 - 28485525
Alignment:
Q  110 attggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagagaatgagtgtt 206  Q
    ||||| ||||||||  ||| |||||||| ||||||||||| | | |||||||||| || | ||||||||  |||||||||| |||||||| ||||||    
T  28485429 attggtttaaattaatgtgggtctcacactttggaaatgggttccacttaaagtggtgggacatacattaatttcatccaataagagaataagtgtt 28485525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 218
Target Start/End: Complemental strand, 29011223 - 29011079
Alignment:
Q  72 actctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtc 171  Q
    ||||| |||| |||| |||||| || |||||||| |||||||| ||||||    ||||||| |||| ||||||||||| | | | | |||||| |  | |    
T  29011223 actctattttcaacactctctcaaacactcacttctttattggtttaaatcgaggtgagtcacacactttggaaatgggttccattcaaagtggtaggac 29011124  T
Q  172 atacattggtttcatccaacaagagaatgagtgttgaagagagagtg 218  Q
    ||||||| ||||||||||  |||||||||||||||  ||||||||||    
T  29011123 atacattagtttcatccattaagagaatgagtgtt--agagagagtg 29011079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 206
Target Start/End: Original strand, 9953705 - 9953813
Alignment:
Q  98 actcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagaga 197  Q
    ||||||||||||||||| |||||| |  |||| ||||||| ||||||||||  | | |||||||||| || | || |||||  |||||||| | ||||||    
T  9953705 actcacttttttattggtttaaatcaaggtgaatctcacactttggaaatgagttccacttaaagtggtgggacacacattaatttcatcccataagaga 9953804  T
Q  198 atgagtgtt 206  Q
     ||||||||    
T  9953805 gtgagtgtt 9953813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 133
Target Start/End: Complemental strand, 16983569 - 16983502
Alignment:
Q  66 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtct 133  Q
    |||| ||||||||||| |||| |||||| |||||||||| | ||||||| |||||| || ||||||||    
T  16983569 agcaacactctcttttgaacactctctctaatactcactctcttattggtttaaatcattgtgagtct 16983502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 178
Target Start/End: Original strand, 32022852 - 32022959
Alignment:
Q  71 cactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagt 170  Q
    |||| ||||||||| |||||||| || ||||||||  |  |||| |||||||| ||||||||||||| |||  |||| | | |||||| ||||| ||||     
T  32022852 cactttctttttaatattctctcaaacactcacttcctccttggtttaaattaaagtgagtctcacactttaaaaataggttctacttgaagtggtgagg 32022951  T
Q  171 catacatt 178  Q
    ||||||||    
T  32022952 catacatt 32022959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 211
Target Start/End: Original strand, 34366707 - 34366842
Alignment:
Q  76 tctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatac 175  Q
    ||||||||||||| ||||    |||||||||||||||| ||||||| || ||  |||||| ||||| |||||||||   | | |||||| ||  ||||||    
T  34366707 tctttttaacattatctctgccactcacttttttattgacttaaataatggtaggtctcatattttagaaatggatttcattcaaagtggtggatcatac 34366806  T
Q  176 attggtttcatccaacaagagaatgagtgttgaaga 211  Q
    | ||||||||||||| || | |||||  ||||||||    
T  34366807 aatggtttcatccaataaaaaaatgaacgttgaaga 34366842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 6098787 - 6098840
Alignment:
Q  71 cactctctttttaacattctctccaatactcacttttttattggcttaaattat 124  Q
    ||||||||||| ||||||||||| |||||||||| | ||||||  |||||||||    
T  6098787 cactctcttttaaacattctctctaatactcactctcttattgatttaaattat 6098840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 38091440 - 38091399
Alignment:
Q  173 tacattggtttcatccaacaagagaatgagtgttgaagagag 214  Q
    ||||||||||| |||||| ||||||||||||||| |||||||    
T  38091440 tacattggttttatccaataagagaatgagtgttcaagagag 38091399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 164
Target Start/End: Complemental strand, 31703902 - 31703826
Alignment:
Q  88 tctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtg 164  Q
    ||||||||| ||||||||||||||||| | ||||||  |||  | ||||| ||||||||||||| | || |||||||    
T  31703902 tctctccaagactcacttttttattggttaaaattaatgtggatatcacactttggaaatggatcccacataaagtg 31703826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 66 - 213
Target Start/End: Complemental strand, 19953571 - 19953424
Alignment:
Q  66 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtga 165  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||| | | ||||||||||     
T  19953571 agcaacactctctttttaacattttctccaatactcacttttttattggattaaatcatagtgagtctcacactttggaaatgggttccacttaaagtgg 19953472  T
Q  166 tgagtcatacattggtttcatccaacaagagaatgagtgttgaagaga 213  Q
    || |||||||||||||||||||||| || |||||||||||||||||||    
T  19953471 tgggtcatacattggtttcatccaataaaagaatgagtgttgaagaga 19953424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 66 - 214
Target Start/End: Original strand, 19193507 - 19193655
Alignment:
Q  66 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtga 165  Q
    |||| ||||||||||| |||| ||||||||| ||||||||| | ||| | |||||| || ||| |||||| | ||||||||| | |   ||||||||||     
T  19193507 agcaacactctcttttcaacactctctccaacactcactttctaattagtttaaatcatggtgggtctcatactttggaaataggtttcacttaaagtgg 19193606  T
Q  166 tgagtcatacattggtttcatccaacaagagaatgagtgttgaagagag 214  Q
    || ||||||||||||||| |||||| ||||||||||||||| |||||||    
T  19193607 tgggtcatacattggttttatccaataagagaatgagtgttcaagagag 19193655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 98 - 214
Target Start/End: Original strand, 42669766 - 42669882
Alignment:
Q  98 actcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagaga 197  Q
    ||||||||||| |||||||||||| || ||| || ||||| ||||||||||| |   |||||||||| || ||||||||||| ||  |||||| |||| |    
T  42669766 actcactttttaattggcttaaatcatggtgggtttcacactttggaaatgggtttcacttaaagtggtgggtcatacattgattctatccaataagaaa 42669865  T
Q  198 atgagtgttgaagagag 214  Q
    |||||||||||||||||    
T  42669866 atgagtgttgaagagag 42669882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 71 - 190
Target Start/End: Original strand, 18949204 - 18949323
Alignment:
Q  71 cactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagt 170  Q
    ||||||||||| |||| | ||||||| ||||| ||| | |||||||||||| || ||| |||||||| |||  |||||| | | |||||||||||||  |    
T  18949204 cactctcttttcaacactttctccaacactcaatttctaattggcttaaatcatggtgggtctcacactttaaaaatgggttccacttaaagtgatggat 18949303  T
Q  171 catacattggtttcatccaa 190  Q
    ||||||||||||| ||||||    
T  18949304 catacattggttttatccaa 18949323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 66 - 214
Target Start/End: Original strand, 6420459 - 6420605
Alignment:
Q  66 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtga 165  Q
    |||| ||||||||||| |||| ||||||||  ||||||||| |||||||||||||| || ||| ||||||||||  |||||| | |   ||||||| ||     
T  6420459 agcaacactctcttttcaacactctctccaccactcactttcttattggcttaaatcatggtgggtctcacatt--ggaaataggtttcacttaaaatgg 6420556  T
Q  166 tgagtcatacattggtttcatccaacaagagaatgagtgttgaagagag 214  Q
    || ||||||||||  ||||| |||| || | ||||||||||||| ||||    
T  6420557 tgggtcatacattaatttcacccaataaaaaaatgagtgttgaaaagag 6420605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 206
Target Start/End: Complemental strand, 31494382 - 31494242
Alignment:
Q  66 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtga 165  Q
    |||| ||||||||||| |||| ||||   || ||||||||  |||||||||||||| |  ||| ||||||||  |||||||||| | | |||||||||      
T  31494382 agcaacactctcttttcaacactctcctaaacactcacttcattattggcttaaatcaaggtgggtctcacacattggaaatgggttccacttaaagtag 31494283  T
Q  166 tgagtcatacattggtttcatccaacaagagaatgagtgtt 206  Q
    || | ||||||||  |||||||||| |||||| ||||||||    
T  31494282 tgggacatacattattttcatccaataagagagtgagtgtt 31494242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 214
Target Start/End: Complemental strand, 20458994 - 20458939
Alignment:
Q  159 aaagtgatgagtcatacattggtttcatccaacaagagaatgagtgttgaagagag 214  Q
    |||||| ||||||| ||| ||||||||||||| ||||||||||||||| |||||||    
T  20458994 aaagtggtgagtcaaacaatggtttcatccaataagagaatgagtgtttaagagag 20458939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 45554729 - 45554679
Alignment:
Q  71 cactctctttttaacattctctccaatactcacttttttattggcttaaat 121  Q
    ||||||||||| ||||||||||| |||||||||||| ||||||| ||||||    
T  45554729 cactctcttttgaacattctctctaatactcactttcttattggtttaaat 45554679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 206
Target Start/End: Complemental strand, 37078119 - 37077996
Alignment:
Q  83 aacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtt 182  Q
    |||| |||||| || ||||||||  ||||||| ||||||||  ||| ||||||||  |||||||||||| | |||||||||| || | |||||| |  ||    
T  37078119 aacactctctcaaacactcacttcattattggtttaaattaaggtgggtctcacacattggaaatggattccacttaaagtggtgggacatacactaatt 37078020  T
Q  183 tcatccaacaagagaatgagtgtt 206  Q
     ||||||| |||||| || |||||    
T  37078019 acatccaataagagagtgtgtgtt 37077996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 220
Target Start/End: Original strand, 385050 - 385139
Alignment:
Q  131 tctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagagaatgagtgttgaagagagagtgtc 220  Q
    |||||||  ||| |||||||| | |||||| ||| || | |||||| | ||||||||||| |||||| ||||||||||| | ||||||||    
T  385050 tctcacacattgaaaatggattccacttaaggtggtgggacatacactagtttcatccaataagagagtgagtgttgaaaatagagtgtc 385139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 11826193 - 11826148
Alignment:
Q  76 tctttttaacattctctccaatactcacttttttattggcttaaat 121  Q
    |||||||||||||||||| |||| |||||||||||| | |||||||    
T  11826193 tctttttaacattctctctaatattcacttttttatcgacttaaat 11826148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 206
Target Start/End: Complemental strand, 30706445 - 30706305
Alignment:
Q  66 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtga 165  Q
    |||| ||||||||||| |||| |||||| || ||||||||| || |||| ||||||||  ||| |||||| |  ||| |||||  | | | ||||| ||     
T  30706445 agcaacactctcttttcaacactctctcaaacactcactttattgttggtttaaattaaggtgggtctcatacattgaaaatgagttccatttaaactgg 30706346  T
Q  166 tgagtcatacattggtttcatccaacaagagaatgagtgtt 206  Q
    |||| ||||||||  ||||||| || |||||| ||||||||    
T  30706345 tgagacatacattaatttcatcaaataagagagtgagtgtt 30706305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 33678144 - 33678188
Alignment:
Q  89 ctctccaatactcacttttttattggcttaaattatagtgagtct 133  Q
    ||||| |||| ||||||||||||||| ||||||||| ||||||||    
T  33678144 ctctctaatattcacttttttattggtttaaattattgtgagtct 33678188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 66 - 220
Target Start/End: Original strand, 46994367 - 46994521
Alignment:
Q  66 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtga 165  Q
    |||| |||||||||||||||  |||||| || |||||||||||||||||||||||| || ||| |||||||| ||||||||||||||  ||||||||||     
T  46994367 agcaacactctctttttaacgctctctctaacactcacttttttattggcttaaatcatggtgggtctcacactttggaaatggatatcacttaaagtgg 46994466  T
Q  166 tgagtcatacattggtttcatccaacaagagaatgagtgttgaagagagagtgtc 220  Q
    || ||||||||||| ||||||| || || | ||||| ||||||| | ||||||||    
T  46994467 tgggtcatacattgatttcatctaataaaaaaatgaatgttgaaaatagagtgtc 46994521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 89 - 214
Target Start/End: Complemental strand, 23434848 - 23434724
Alignment:
Q  89 ctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatcc 188  Q
    ||||| |||||||||||||||||||||||||||||| ||| |||||||| ||| ||||||  | | |||||||||| ||  |||||||||||||| ||||    
T  23434848 ctctcaaatactcacttttttattggcttaaattatggtgggtctcacactttagaaatgtgttc-acttaaagtggtggatcatacattggttttatcc 23434750  T
Q  189 aacaagagaatgagtgttgaagagag 214  Q
    || |||||||||||||||||||||||    
T  23434749 aataagagaatgagtgttgaagagag 23434724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 71 - 211
Target Start/End: Complemental strand, 2911932 - 2911792
Alignment:
Q  71 cactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagt 170  Q
    |||| |||||| |||| |||||||||||||||||||||||||||||||||| || |||  ||||||| ||| ||||| | | | ||||||||||||||||    
T  2911932 cactttcttttcaacactctctccaatactcacttttttattggcttaaatcatggtggatctcacactttagaaataggttccacttaaagtgatgagt 2911833  T
Q  171 catacattggtttcatccaacaagagaatgagtgttgaaga 211  Q
    ||||||||  ||  || ||| ||||||||||||||||||||    
T  2911832 catacattaattatattcaataagagaatgagtgttgaaga 2911792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 66 - 213
Target Start/End: Original strand, 4089983 - 4090128
Alignment:
Q  66 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtga 165  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||  ||| |||| || |||||||||||| ||| ||||||| ||| ||  |||||||    
T  4089983 agcagcactttctttttaacattctctccaacactcacttttttataagctaaaatcatggtgagtctcacactttagaaatgggtaccac--aaagtga 4090080  T
Q  166 tgagtcatacattggtttcatccaacaagagaatgagtgttgaagaga 213  Q
    || |||||| |||| |||||||||| || | ||| |||||| ||||||    
T  4090081 tgggtcatagattgatttcatccaataaaaaaataagtgttaaagaga 4090128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 66 - 148
Target Start/End: Complemental strand, 20954855 - 20954773
Alignment:
Q  66 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatg 148  Q
    |||| ||||||||||| |||| |||||| || |||||||||||||||||||||||| || |||||||||||| ||| ||||||    
T  20954855 agcaacactctcttttcaacactctctcaaacactcacttttttattggcttaaatcatggtgagtctcacactttagaaatg 20954773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 98 - 214
Target Start/End: Original strand, 24845466 - 24845582
Alignment:
Q  98 actcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagaga 197  Q
    ||||||||| | |||||||||||| || |||||||||||| ||||||||||| | | |||||||||| || |||| |||||||||| | ||||  ||| |    
T  24845466 actcactttctaattggcttaaatcatggtgagtctcacactttggaaatgggttccacttaaagtggtgggtcacacattggtttaagccaattagaaa 24845565  T
Q  198 atgagtgttgaagagag 214  Q
     ||| ||||||||||||    
T  24845566 gtgaatgttgaagagag 24845582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 220
Target Start/End: Complemental strand, 44350299 - 44350177
Alignment:
Q  98 actcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagaga 197  Q
    ||||||||| | |||||||||||| || ||| |||||||| ||||||||||||| | ||||||| || || |||| |||||||||| | ||||  ||| |    
T  44350299 actcactttctaattggcttaaatcatggtgggtctcacactttggaaatggattccacttaaaatggtgggtcacacattggtttaagccaattagaaa 44350200  T
Q  198 atgagtgttgaagagagagtgtc 220  Q
     |||| |||||| ||||||||||    
T  44350199 gtgagggttgaaaagagagtgtc 44350177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 148
Target Start/End: Complemental strand, 25003519 - 25003454
Alignment:
Q  83 aacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatg 148  Q
    |||| ||||| ||| |||||||||||||||||||||||||||  || |||||||| ||||||||||    
T  25003519 aacactctctgcaacactcacttttttattggcttaaattatgatgggtctcacactttggaaatg 25003454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 213
Target Start/End: Original strand, 33852535 - 33852621
Alignment:
Q  127 tgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagagaatgagtgttgaagaga 213  Q
    |||| ||||||| |||||||||||| | |||||||||| || | |||||| |  ||||||| || ||||||||||||||| ||||||    
T  33852535 tgagactcacatattggaaatggattccacttaaagtggtgggacatacactaatttcatctaataagagaatgagtgttaaagaga 33852621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 212
Target Start/End: Original strand, 29462040 - 29462152
Alignment:
Q  98 actcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagaga 197  Q
    ||||||||| | |||| | |||||||| ||  |||||||  ||||||||||  | | |||||||||  |||||||||||||| ||| || ||| || |||    
T  29462040 actcactttataattgtcctaaattatggtttgtctcac--tttggaaatgtgttccacttaaagtagtgagtcatacattgattttattcaataaaaga 29462137  T
Q  198 atgagtgttgaagag 212  Q
    |||||||||||||||    
T  29462138 atgagtgttgaagag 29462152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 206
Target Start/End: Complemental strand, 39523686 - 39523611
Alignment:
Q  131 tctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagagaatgagtgtt 206  Q
    |||||||| |||||||||| | | |||||||||| |||| |||||  | ||||||||||| || ||||||||||||    
T  39523686 tctcacatattggaaatgggttccacttaaagtggtgagacataccctagtttcatccaataaaagaatgagtgtt 39523611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 37489914 - 37489964
Alignment:
Q  71 cactctctttttaacattctctccaatactcacttttttattggcttaaat 121  Q
    ||||||||||| ||||||||||| || |||||||| |||||||| ||||||    
T  37489914 cactctcttttcaacattctctcaaacactcacttgtttattggtttaaat 37489964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 6580012 - 6580065
Alignment:
Q  71 cactctctttttaacattctctccaatactcacttttttattggcttaaattat 124  Q
    ||||||||||| |||| |||||| |||||||||| | ||||||| |||||||||    
T  6580012 cactctcttttgaacactctctctaatactcactctcttattggtttaaattat 6580065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 32721020 - 32721085
Alignment:
Q  155 acttaaagtgatgagtcatacattggtttcatccaacaagagaatgagtgttgaagagagagtgtc 220  Q
    ||||||| ||||| ||||||||||| ||| |||||| || |||||||| ||| || ||||||||||    
T  32721020 acttaaattgatgggtcatacattgattttatccaataaaagaatgagagttaaaaagagagtgtc 32721085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 131
Target Start/End: Original strand, 48374444 - 48374509
Alignment:
Q  66 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagt 131  Q
    |||| ||||||||||| |||| |||||| |||||||||| | || |||| ||||||||| ||||||    
T  48374444 agcaacactctcttttgaacactctctctaatactcactctcttgttggtttaaattattgtgagt 48374509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 74 - 214
Target Start/End: Original strand, 5994880 - 5995020
Alignment:
Q  74 tctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcat 173  Q
    |||||||| |||| ||||||||| | ||||||| | |||| ||||||| || ||| ||||||||  |||||||||| | | |||||||||| ||||||||    
T  5994880 tctcttttcaacactctctccaacattcactttctaattgacttaaatcatggtgggtctcacacattggaaatgggttccacttaaagtggtgagtcat 5994979  T
Q  174 acattggtttcatccaacaagagaatgagtgttgaagagag 214  Q
    ||||| |||| |||||| ||||||||||||||| |||||||    
T  5994980 acattagttttatccaataagagaatgagtgttaaagagag 5995020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 66 - 220
Target Start/End: Original strand, 51339969 - 51340122
Alignment:
Q  66 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtga 165  Q
    |||| |||||| ||||||||| ||||| ||  ||||| ||| |||||||||||||| |||||| |||||||| ||||||||| | |   |||||||| |     
T  51339969 agcaacactctttttttaacactctcttcac-actcattttcttattggcttaaatcatagtgggtctcacactttggaaataggtttcacttaaagcgg 51340067  T
Q  166 tgagtcatacattggtttcatccaacaagagaatgagtgttgaagagagagtgtc 220  Q
    || ||| ||||||||||||||| || || ||||||| ||||||||||||||||||    
T  51340068 tgggtcgtacattggtttcatcaaataaaagaatgaatgttgaagagagagtgtc 51340122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 66 - 204
Target Start/End: Original strand, 51904620 - 51904758
Alignment:
Q  66 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtga 165  Q
    |||| ||||||||||| |||| |||||| || ||| || || |||||||||||||| || ||| |||||||| |||| |||| | | | |||||||||||    
T  51904620 agcaacactctcttttcaacactctctctaacacttacattcttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtga 51904719  T
Q  166 tgagtcatacattggtttcatccaacaagagaatgagtg 204  Q
    || ||||||||||| ||||||| || |||||||||||||    
T  51904720 tgggtcatacattgatttcatctaataagagaatgagtg 51904758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 98 - 214
Target Start/End: Original strand, 5027432 - 5027547
Alignment:
Q  98 actcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagaga 197  Q
    |||||||||||||||||||||||| |   |||||||||||||||| |||| ||| | ||||||||||||| |||||| |||| || ||||||| || | |    
T  5027432 actcacttttttattggcttaaatcaagatgagtctcacattttgaaaatcgattcaacttaaagtgatgggtcatatattgattacatccaataa-aaa 5027530  T
Q  198 atgagtgttgaagagag 214  Q
    ||||||||| |||||||    
T  5027531 atgagtgttaaagagag 5027547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 219
Target Start/End: Complemental strand, 27654653 - 27654502
Alignment:
Q  66 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtga 165  Q
    |||| ||||||||||| |||| |||||| || ||||| ||| ||||||| |||||| |  |||  | |||||  |||||||||| | | ||||||||||     
T  27654653 agcaacactctcttttcaacactctctcaaacactcaatttattattggtttaaatcaaggtggatttcacacgttggaaatgggttccacttaaagtgg 27654554  T
Q  166 tgagtcatacattggtttcatccaacaagagaatgagtgttgaagagagagtgt 219  Q
    || | |||||||| |||| |||||| |||||||||||||||  |||||||||||    
T  27654553 tgggacatacattagttttatccaataagagaatgagtgtt--agagagagtgt 27654502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 214
Target Start/End: Complemental strand, 56328832 - 56328706
Alignment:
Q  88 tctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatc 187  Q
    ||||||||| |||||||||| ||||| ||||||| |||||| ||  |||| ||| ||||||| ||   |||||||||  | ||||||  |||||||||||    
T  56328832 tctctccaacactcacttttgtattgacttaaatcatagtgtgttccacactttagaaatgggtatctcttaaagtgtcgggtcataggttggtttcatc 56328733  T
Q  188 caacaagagaatgagtgttgaagagag 214  Q
    | | ||||||||||||||| |||||||    
T  56328732 cgataagagaatgagtgttaaagagag 56328706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 214
Target Start/End: Complemental strand, 8567918 - 8567802
Alignment:
Q  98 actcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagaga 197  Q
    ||||||||||||| |||||||||| ||   ||||| ||   ||||| ||||||| | ||| |||||| || |||||||| ||||||||| ||| ||||||    
T  8567918 actcacttttttaatggcttaaatcatgacgagtcgcatgctttgggaatggattccactcaaagtggtgggtcatacaatggtttcatgcaataagaga 8567819  T
Q  198 atgagtgttgaagagag 214  Q
    |||| ||||||||||||    
T  8567818 atgaatgttgaagagag 8567802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 214
Target Start/End: Original strand, 3976404 - 3976485
Alignment:
Q  133 tcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagagaatgagtgttgaagagag 214  Q
    ||||||||| ||||||| | | ||||||| || ||  |||||||||||||| ||| || |||||||||||||||||||||||    
T  3976404 tcacattttagaaatgggttccacttaaaatggtggatcatacattggttttatcaaataagagaatgagtgttgaagagag 3976485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 214
Target Start/End: Complemental strand, 8586620 - 8586545
Alignment:
Q  139 tttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagagaatgagtgttgaagagag 214  Q
    ||||| ||||||| | ||| |||||| || |||||||| ||||||||| ||| |||||||||| ||||||||||||    
T  8586620 tttgggaatggattccactcaaagtggtgggtcatacaatggtttcatgcaataagagaatgaatgttgaagagag 8586545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 206
Target Start/End: Original strand, 25719123 - 25719257
Alignment:
Q  72 actctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtc 171  Q
    |||||||||| |||| | |||| |||||||||| | | ||||| |||||| || ||| |||  |||||||||||||| |  | || ||||||| || | |    
T  25719123 actctcttttgaacaatttctctaatactcactctctgattgggttaaatcattgtgggtcctacattttggaaatgaaacccacataaagtggtgggac 25719222  T
Q  172 atacattggtttcatccaacaagagaatgagtgtt 206  Q
    |||||||| ||||| |||| |||||| ||||||||    
T  25719223 atacattgatttcaaccaataagagagtgagtgtt 25719257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 167
Target Start/End: Complemental strand, 19677430 - 19677329
Alignment:
Q  66 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtga 165  Q
    |||| |||| ||||||||||| ||||||||| ||||||||| | ||||| |||||| |||||   ||||||| |||| |||||| |   |||||||||||    
T  19677430 agcaacactatctttttaacaatctctccaacactcactttctaattggtttaaatcatagtagatctcacactttgaaaatgggtttcacttaaagtga 19677331  T
Q  166 tg 167  Q
    ||    
T  19677330 tg 19677329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 150
Target Start/End: Complemental strand, 5545754 - 5545670
Alignment:
Q  66 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatgga 150  Q
    |||| ||||||||||| |||| |||||| |||||| ||||||| ||| |||||||| |  ||| |||| |||||||| |||||||    
T  5545754 agcaacactctcttttgaacactctctctaatacttactttttaatttgcttaaatcaatgtgggtcttacattttgaaaatgga 5545670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 121
Target Start/End: Complemental strand, 8109131 - 8109076
Alignment:
Q  66 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaat 121  Q
    |||| ||||||||||| |||| |||||| |||||||||||| ||||||| ||||||    
T  8109131 agcaacactctcttttgaacactctctctaatactcactttcttattggtttaaat 8109076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 39471327 - 39471277
Alignment:
Q  71 cactctctttttaacattctctccaatactcacttttttattggcttaaat 121  Q
    ||||||||||| ||||||||||| |||||||||| | ||||||| ||||||    
T  39471327 cactctcttttaaacattctctctaatactcactctcttattggtttaaat 39471277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 32846234 - 32846185
Alignment:
Q  99 ctcacttttttattggcttaaattatagtgagtctcacattttggaaatg 148  Q
    |||||||||| |||||||||||| ||| || |||||||| ||||||||||    
T  32846234 ctcactttttaattggcttaaatcatattgggtctcacactttggaaatg 32846185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 209
Target Start/End: Complemental strand, 16318477 - 16318437
Alignment:
Q  169 gtcatacattggtttcatccaacaagagaatgagtgttgaa 209  Q
    ||||||||||| ||| |||||| ||||||||||||||||||    
T  16318477 gtcatacattgattttatccaataagagaatgagtgttgaa 16318437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 147
Target Start/End: Complemental strand, 16318965 - 16318893
Alignment:
Q  75 ctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaat 147  Q
    ||||||| |||| ||| ||||| | ||||||| | |||||||||||| ||  ||||||||||| |||||||||    
T  16318965 ctcttttcaacactctttccaacaatcactttctaattggcttaaatcatgatgagtctcacactttggaaat 16318893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 1e-24; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 71 - 220
Target Start/End: Original strand, 25002015 - 25002164
Alignment:
Q  71 cactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagt 170  Q
    ||||||||||| |||| ||||||||| ||||||||| | ||||| |||||| |||||| |||||||| |||||||||||   | |||||||||| || ||    
T  25002015 cactctcttttcaacactctctccaacactcactttctaattggtttaaatcatagtgggtctcacactttggaaatgggctccacttaaagtggtgggt 25002114  T
Q  171 catacattggtttcatccaacaagagaatgagtgttgaagagagagtgtc 220  Q
    || |||||||||| | ||||  ||| | ||||||||||| ||||||||||    
T  25002115 cacacattggtttaagccaattagaaagtgagtgttgaaaagagagtgtc 25002164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 98 - 220
Target Start/End: Complemental strand, 7585130 - 7585008
Alignment:
Q  98 actcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagaga 197  Q
    ||||||||| ||||| | ||||||||  ||||||||||||  |||||||||| |   ||||||||||||  | |||||| | ||||||||||| ||||||    
T  7585130 actcactttattatttgtttaaattaaggtgagtctcacacattggaaatgggtttcacttaaagtgataggacatacactagtttcatccaataagaga 7585031  T
Q  198 atgagtgttgaagagagagtgtc 220  Q
    |||||||||||| ||||||||||    
T  7585030 atgagtgttgaaaagagagtgtc 7585008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 75 - 218
Target Start/End: Complemental strand, 36325604 - 36325462
Alignment:
Q  75 ctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcata 174  Q
    ||||||| |||||||||||||| ||||||||||| |||||||||||| || ||| |||| ||| |||  |||||| | | |||||||||| || |||| |    
T  36325604 ctcttttcaacattctctccaacactcactttttaattggcttaaatcatggtgggtcttacacttt-aaaatgggttccacttaaagtggtgggtcaca 36325506  T
Q  175 cattggtttcatccaacaagagaatgagtgttgaagagagagtg 218  Q
    ||||||||| | ||||  ||| | ||||||||||| ||| ||||    
T  36325505 cattggtttaagccaattagaaagtgagtgttgaaaagatagtg 36325462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 183
Target Start/End: Original strand, 41034439 - 41034551
Alignment:
Q  71 cactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagt 170  Q
    ||||||||||| |||| ||| ||||| ||||||||| | |||||||||||| || ||| |||||||| ||||||||||| | | ||||||| || ||||     
T  41034439 cactctcttttcaacactctatccaacactcactttctaattggcttaaatcatggtgggtctcacactttggaaatgggttccacttaaaatggtgagc 41034538  T
Q  171 catacattggttt 183  Q
    || | ||||||||    
T  41034539 cacatattggttt 41034551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 139 - 214
Target Start/End: Complemental strand, 10299988 - 10299913
Alignment:
Q  139 tttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagagaatgagtgttgaagagag 214  Q
    ||||||||||| | | ||| |||||| || ||||| |||||| ||||||||| |||||||||||||||||||||||    
T  10299988 tttggaaatgggtcccactaaaagtggtgggtcatgcattgggttcatccaataagagaatgagtgttgaagagag 10299913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 200
Target Start/End: Original strand, 6529878 - 6530012
Alignment:
Q  66 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtga 165  Q
    |||| ||||||||||| |||| | |||| || |||| |||| || |||||||||||||  ||||||||||||  || ||||||| | | ||| ||| ||     
T  6529878 agcaacactctcttttcaacactttctcaaacactcgctttatttttggcttaaattaaggtgagtctcacacattagaaatgggttccactaaaaatgg 6529977  T
Q  166 tgagtcatacattggtttcatccaacaagagaatg 200  Q
    || | |||||||| ||||||||||| |||||||||    
T  6529978 tgggacatacattagtttcatccaataagagaatg 6530012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 133
Target Start/End: Original strand, 28490727 - 28490794
Alignment:
Q  66 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtct 133  Q
    |||| ||||||||||| |||| |||||| |||||||||| | ||||||| ||||||||| ||| ||||    
T  28490727 agcaacactctcttttgaacactctctctaatactcactctcttattggtttaaattattgtgggtct 28490794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 30325884 - 30325934
Alignment:
Q  71 cactctctttttaacattctctccaatactcacttttttattggcttaaat 121  Q
    ||||||||||| |||| |||||| |||||||||||| ||||||| ||||||    
T  30325884 cactctcttttgaacactctctctaatactcactttcttattggtttaaat 30325934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 5630638 - 5630585
Alignment:
Q  98 actcacttttttattggcttaaattatagtgagtctcacattttggaaatggat 151  Q
    ||||||||| ||||||||||||||||| ||| |||||| | |||| ||||||||    
T  5630638 actcactttattattggcttaaattatggtgggtctcatactttgaaaatggat 5630585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 71 - 183
Target Start/End: Original strand, 6163528 - 6163640
Alignment:
Q  71 cactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagt 170  Q
    ||||||||||| || |||||||| || ||||||||||| |||||||||||| |||||| |||||||| ||||||||||  | |||||||||||| || ||    
T  6163528 cactctcttttcaatattctctctaacactcactttttaattggcttaaatcatagtgcgtctcacactttggaaatgagttctacttaaagtggtgggt 6163627  T
Q  171 catacattggttt 183  Q
    || ||||||||||    
T  6163628 caaacattggttt 6163640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 83 - 214
Target Start/End: Original strand, 26170912 - 26171043
Alignment:
Q  83 aacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtt 182  Q
    |||| ||||||||| ||||||||||| | || |||||||||| ||| || ||||| ||||||||||| | | |||||||||| || ||||||||||| ||    
T  26170912 aacactctctccaacactcactttttaactgacttaaattatggtgggtttcacactttggaaatgggttccacttaaagtggtgggtcatacattgatt 26171011  T
Q  183 tcatccaacaagagaatgagtgttgaagagag 214  Q
    | |||||| |||| ||||||||||||| ||||    
T  26171012 ttatccaataagaaaatgagtgttgaaaagag 26171043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 88 - 214
Target Start/End: Complemental strand, 25326985 - 25326859
Alignment:
Q  88 tctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatc 187  Q
    ||||||||| ||||||||||| ||| ||||||||||| ||| || |  || ||||||||||| | | |||||||||| || ||||||||||| ||| |||    
T  25326985 tctctccaacactcactttttaattagcttaaattatggtgggttttgcactttggaaatgggttccacttaaagtggtgggtcatacattgattttatc 25326886  T
Q  188 caacaagagaatgagtgttgaagagag 214  Q
    ||| |||| ||||||||||||||||||    
T  25326885 caataagaaaatgagtgttgaagagag 25326859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 88 - 214
Target Start/End: Complemental strand, 26159520 - 26159394
Alignment:
Q  88 tctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatc 187  Q
    ||||||||| ||||||||||| ||| ||||||||||| ||| || |  || ||||||||||| | | |||||||||| || ||||||||||| ||| |||    
T  26159520 tctctccaacactcactttttaattagcttaaattatggtgggttttgcactttggaaatgggttccacttaaagtggtgggtcatacattgattttatc 26159421  T
Q  188 caacaagagaatgagtgttgaagagag 214  Q
    ||| |||| ||||||||||||||||||    
T  26159420 caataagaaaatgagtgttgaagagag 26159394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 83 - 210
Target Start/End: Complemental strand, 25010151 - 25010025
Alignment:
Q  83 aacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtt 182  Q
    |||| ||||||||| ||||| ||||||||||||||||||||||||| |||||||| ||| ||||||| | | | | ||| |  |  || ||||| |||||    
T  25010151 aacactctctccaacactcatttttttattggcttaaattatagtg-gtctcacactttagaaatgggttccattcaaaatagtaggtaatacaatggtt 25010053  T
Q  183 tcatccaacaagagaatgagtgttgaag 210  Q
    |||||||| |||||||||||||||||||    
T  25010052 tcatccaataagagaatgagtgttgaag 25010025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 71 - 219
Target Start/End: Complemental strand, 28274957 - 28274811
Alignment:
Q  71 cactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagt 170  Q
    ||||||||||| |||| |||||  || || |||||| ||||||| |||||| |  ||| ||||||||  |||||||||| | | |||||| |||||| |     
T  28274957 cactctcttttcaacactctcttaaacacccactttattattggtttaaatcaaggtgggtctcacacattggaaatgggttccacttaaggtgatggga 28274858  T
Q  171 catacattggtttcatccaacaagagaatgagtgttgaagagagagtgt 219  Q
    |||||| | ||||||||||| |||||| ||||||||  |||||||||||    
T  28274857 catacactagtttcatccaataagagagtgagtgtt--agagagagtgt 28274811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 71 - 214
Target Start/End: Complemental strand, 18473820 - 18473677
Alignment:
Q  71 cactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagt 170  Q
    ||||||||||| |||| ||||| ||| ||||||||| | |||||||||||| || ||| |||||||| |||| |||||| | | ||||||||||  | ||    
T  18473820 cactctcttttcaacactctcttcaacactcactttctaattggcttaaatcatggtgggtctcacactttgaaaatgggttccacttaaagtggcgggt 18473721  T
Q  171 catacattggtttcatccaacaagagaatgagtgttgaagagag 214  Q
    || | |||||||| |  |||  ||| | ||||||||||||||||    
T  18473720 cacatattggtttaagtcaattagaaagtgagtgttgaagagag 18473677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 148
Target Start/End: Original strand, 4817181 - 4817257
Alignment:
Q  71 cactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatg 148  Q
    |||||||||||||||||||||||||| ||| | ||||||||||||||||||| | |||  ||||||| |||| |||||    
T  4817181 cactctctttttaacattctctccaacactta-ttttttattggcttaaattgtggtggatctcacactttgaaaatg 4817257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 190
Target Start/End: Complemental strand, 7549730 - 7549637
Alignment:
Q  98 actcacttttttattggcttaaattatagtgagtctcacattttgg-aaatggatactacttaaagtgatgagtcatacattggtttcatccaa 190  Q
    ||||||||||| ||||||||||||||| |||||||||||| ||||| |||||  | | |||||||||| |  |||||||||| |||| ||||||    
T  7549730 actcactttttaattggcttaaattatggtgagtctcacactttggaaaatgtgttccacttaaagtggttggtcatacattagttttatccaa 7549637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 219
Target Start/End: Original strand, 15741860 - 15741965
Alignment:
Q  114 gcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagagaatgagtgttgaagaga 213  Q
    |||||||| |||| | |||||||| ||||||||||  |   ||||||||||||   |||||||||||||| |||||| |||  ||||||||||||| |||    
T  15741860 gcttaaatcatagcgggtctcacactttggaaatgagtttcacttaaagtgatcgatcatacattggttttatccaataagttaatgagtgttgaaaaga 15741959  T
Q  214 gagtgt 219  Q
    ||||||    
T  15741960 gagtgt 15741965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 190
Target Start/End: Complemental strand, 18157212 - 18157090
Alignment:
Q  66 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtga 165  Q
    |||| ||||||||||| ||||||||||| |||||||||||  ||||||| ||||  |  |||| |||||||| ||||||||||  | | ||||||||||     
T  18157212 agcaacactctcttttcaacattctctcaaatactcacttccttattggtttaa--tcaagtgggtctcacactttggaaatgtgttccacttaaagtgg 18157115  T
Q  166 tgagtcatacattggtttcatccaa 190  Q
    || | ||||||||  ||||||||||    
T  18157114 tgggacatacattaatttcatccaa 18157090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 215
Target Start/End: Original strand, 21970282 - 21970431
Alignment:
Q  66 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtga 165  Q
    |||| ||||||||||| |||||||||   |||||||||||  ||||||| |||||| |   || ||||||||  ||| |||||| | | ||||||||||     
T  21970282 agcaacactctcttttaaacattctcataaatactcacttcattattggtttaaatcaagatgggtctcacacattgaaaatgggttccacttaaagtgg 21970381  T
Q  166 tgagtcatacattggtttcatccaacaagagaatgagtgttgaagagaga 215  Q
    || | |||||| | ||||||| ||| |||||| ||||||||||| |||||    
T  21970382 tgggacatacactagtttcattcaataagagagtgagtgttgaaaagaga 21970431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 190
Target Start/End: Original strand, 40125857 - 40125967
Alignment:
Q  76 tctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatac 175  Q
    |||||| |||| ||||||||| | ||||||| | |||| |||||||||| ||    |||||| ||||||||||||| | |||||||||| || |||||||    
T  40125857 tcttttcaacactctctccaacattcactttctaattgacttaaattatggt----ctcacactttggaaatggattccacttaaagtggtgggtcatac 40125952  T
Q  176 attggtttcatccaa 190  Q
    ||| |||| ||||||    
T  40125953 attagttttatccaa 40125967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 164
Target Start/End: Original strand, 39150023 - 39150110
Alignment:
Q  78 tttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcaca-ttttggaaatggatactacttaaagtg 164  Q
    ||||||||| | |||| ||||| ||||||||  ||||||||||| |||||| |||||||| ||||||||||| || | ||||||||||    
T  39150023 tttttaacactatctcgaatacacactttttatttggcttaaatcatagtgtgtctcacacttttggaaatgcattccacttaaagtg 39150110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 219
Target Start/End: Original strand, 14340984 - 14341076
Alignment:
Q  125 agtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagagaatgagtgttgaagagagagtgt 219  Q
    ||||| |||||||| |||||||||| | | |||||||||| || | |||| ||| ||||||||||| || | ||||||||||  |||||||||||    
T  14340984 agtgaatctcacatattggaaatgggttccacttaaagtggtgggacatatattagtttcatccaataaaaaaatgagtgtt--agagagagtgt 14341076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 183
Target Start/End: Complemental strand, 33234544 - 33234465
Alignment:
Q  104 ttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggttt 183  Q
    ||||| ||||||||||||||| |||  ||||||| ||| ||||||| |   |||||||||| ||||||||||||| ||||    
T  33234544 tttttaattggcttaaattatggtggatctcacactttagaaatgggtttcacttaaagtggtgagtcatacatttgttt 33234465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 18953272 - 18953313
Alignment:
Q  170 tcatacattggtttcatccaacaagagaatgagtgttgaaga 211  Q
    ||||||||||||||||||||| || | |||||||||||||||    
T  18953272 tcatacattggtttcatccaataaaaaaatgagtgttgaaga 18953313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 19101612 - 19101661
Alignment:
Q  72 actctctttttaacattctctccaatactcacttttttattggcttaaat 121  Q
    |||||||||| |||| |||||| |||||||||||| ||||||| ||||||    
T  19101612 actctcttttgaacactctctctaatactcactttcttattggtttaaat 19101661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 44807130 - 44807175
Alignment:
Q  172 atacattggtttcatccaacaagagaatgagtgttgaagagagagt 217  Q
    ||||||||||||| ||| | |||||||||||||||||| |||||||    
T  44807130 atacattggtttcttccgataagagaatgagtgttgaaaagagagt 44807175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 2593042 - 2592970
Alignment:
Q  104 ttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcataca 176  Q
    |||||||||| ||||||| |  ||| |||||||| |||  |||||||| | |||||||||| |||||||||||    
T  2593042 ttttttattgacttaaataaaggtgggtctcacactttaaaaatggattccacttaaagtggtgagtcataca 2592970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 28941839 - 28941887
Alignment:
Q  76 tctttttaacattctctccaatactcacttttttattggcttaaattat 124  Q
    |||||| |||| ||||||||||||||| ||||||||||| | |||||||    
T  28941839 tcttttgaacactctctccaatactcatttttttattggatgaaattat 28941887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 206
Target Start/End: Original strand, 31602130 - 31602206
Alignment:
Q  130 gtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagagaatgagtgtt 206  Q
    |||||||| ||||||||||||| | || ||||||| |||| |  ||||  ||||||||||| |||||| ||||||||    
T  31602130 gtctcacactttggaaatggatcccacctaaagtggtgagacccacatgtgtttcatccaataagagagtgagtgtt 31602206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 203
Target Start/End: Original strand, 10798317 - 10798418
Alignment:
Q  102 acttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagagaatga 201  Q
    ||||||| ||||||||||||||| ||| |||||| | ||||||||||  | | |||||||||| || ||||||||||||||| |||||| | ||||||||    
T  10798317 actttttaattggcttaaattattgtgggtctcatactttggaaatgagttccacttaaagtggtgggtcatacattggttttatccaatacgagaatga 10798416  T
Q  202 gt 203  Q
    ||    
T  10798417 gt 10798418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 104 - 220
Target Start/End: Original strand, 11832146 - 11832261
Alignment:
Q  104 ttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagagaatgagt 203  Q
    ||||| |||| |||||||||| ||| || || |||||||||||||| | ||||||||| || || || ||| |||||||| ||||||  |||||||||||    
T  11832146 tttttaattgacttaaattatggtgggtttcgcattttggaaatgggttctacttaaattggtgggttatatattggttt-atccaatgagagaatgagt 11832244  T
Q  204 gttgaagagagagtgtc 220  Q
    |||||| ||||||||||    
T  11832245 gttgaaaagagagtgtc 11832261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 83 - 214
Target Start/End: Complemental strand, 214193 - 214063
Alignment:
Q  83 aacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtt 182  Q
    |||| ||||| ||| ||||||||||| ||||  ||||| |||  || |||||||| |||||||| |||  | | |||||||| || |||||| |||||||    
T  214193 aacactctcttcaacactcactttttaattgatttaaaatatgatgggtctcacactttggaaagggactccatttaaagtggtgggtcatatattggtt 214094  T
Q  183 tcatccaacaagagaatgagtgttgaagagag 214  Q
    | |||||| |||||||||||||||||||||||    
T  214093 t-atccaataagagaatgagtgttgaagagag 214063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 88 - 183
Target Start/End: Complemental strand, 7791982 - 7791887
Alignment:
Q  88 tctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggttt 183  Q
    ||||||||| ||||||||| | |||||||||||| | |||| |||||||| ||||||||| ||| | |||||||||| || |||| ||||||||||    
T  7791982 tctctccaacactcactttctaattggcttaaatcacagtgggtctcacactttggaaatagattccacttaaagtggtgggtcacacattggttt 7791887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 108 - 214
Target Start/End: Original strand, 22813318 - 22813424
Alignment:
Q  108 ttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagagaatgagtgttg 207  Q
    |||||||||||||| || |||||||||||| ||| ||||||| | | ||| |||||| || |||||||||||  |||||||||  ||| ||||||||||     
T  22813318 ttattggcttaaatcatggtgagtctcacactttcgaaatgggttccactaaaagtggtgggtcatacattgcattcatccaatgagaaaatgagtgttc 22813417  T
Q  208 aagagag 214  Q
    |||||||    
T  22813418 aagagag 22813424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 183
Target Start/End: Original strand, 53655419 - 53655528
Alignment:
Q  74 tctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcat 173  Q
    |||||||| |||| ||||||||| ||||||||| | |||||||||||| |||||   ||||||| |||| |||||| | | ||||||| || || ||||     
T  53655419 tctcttttcaacactctctccaacactcactttctaattggcttaaatcatagttgatctcacactttgaaaatgggttccacttaaaatggtgggtcac 53655518  T
Q  174 acattggttt 183  Q
    ||||||||||    
T  53655519 acattggttt 53655528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 220
Target Start/End: Original strand, 34706591 - 34706740
Alignment:
Q  71 cactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagt 170  Q
    ||||||||||| |||| | ||||||| || |||||| | ||| |||||||| || |||  ||||||| ||||||||||| | |  ||||||||| || ||    
T  34706591 cactctcttttgaacactatctccaacacccactttctaatttgcttaaatcatggtggatctcacactttggaaatgggttccgcttaaagtggtgggt 34706690  T
Q  171 catacattggtttcatccaacaagagaatgagtgttgaagagagagtgtc 220  Q
    || |||||| ||| | | ||  ||| | ||||||||||| ||||||||||    
T  34706691 cacacattgatttaagcaaattagaaagtgagtgttgaaaagagagtgtc 34706740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 206
Target Start/End: Complemental strand, 8475298 - 8475190
Alignment:
Q  98 actcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagaga 197  Q
    ||||||||| ||||| | | ||||||  ||| |||||||| ||||||||||| | | | |||||| | |||| |||||||| ||||||||||| ||||||    
T  8475298 actcactttcttattagttcaaattaaggtgggtctcacactttggaaatgggttccatttaaagcggtgagacatacattagtttcatccaataagaga 8475199  T
Q  198 atgagtgtt 206  Q
     ||| ||||    
T  8475198 gtgaatgtt 8475190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 121
Target Start/End: Complemental strand, 20791471 - 20791416
Alignment:
Q  66 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaat 121  Q
    |||| ||||||||||| |||| |||||| |||||||||||| ||||||| ||||||    
T  20791471 agcaccactctcttttgaacactctctctaatactcactttcttattggtttaaat 20791416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 207
Target Start/End: Original strand, 44225873 - 44225980
Alignment:
Q  100 tcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagagaat 199  Q
    ||||||| ||||||| |||||| |   || ||||||||  ||| |||||| | | ||||||||||||| | |||||| | ||||||||||| |||||| |    
T  44225873 tcactttattattggtttaaataaagctgggtctcacacattgaaaatgggttccacttaaagtgatgggacatacactagtttcatccaataagagagt 44225972  T
Q  200 gagtgttg 207  Q
    ||||||||    
T  44225973 gagtgttg 44225980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 121
Target Start/End: Original strand, 52123961 - 52124016
Alignment:
Q  66 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaat 121  Q
    |||| ||||||||||| |||| |||||| |||||||||||| ||||||| ||||||    
T  52123961 agcaacactctcttttgaacactctctctaatactcactttcttattggtttaaat 52124016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 21175635 - 21175582
Alignment:
Q  98 actcacttttttattggcttaaattatagtgagtctcacattttggaaatggat 151  Q
    ||||||||| ||||||||||||||||| ||| |||||| | |||| ||||||||    
T  21175635 actcactttattattggcttaaattatggtgggtctcatactttgaaaatggat 21175582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 211
Target Start/End: Original strand, 38169029 - 38169142
Alignment:
Q  98 actcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagaga 197  Q
    |||||||||||||||||||||||| || ||   ||||| | |||| |||||| |   ||||||||||| |  ||||||||| | || |||||| || | |    
T  38169029 actcacttttttattggcttaaatcatggtagatctcaaactttgtaaatggttttcacttaaagtgacggatcatacattagatttatccaataaaaaa 38169128  T
Q  198 atgagtgttgaaga 211  Q
    ||||||||||||||    
T  38169129 atgagtgttgaaga 38169142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 44844151 - 44844102
Alignment:
Q  72 actctctttttaacattctctccaatactcacttttttattggcttaaat 121  Q
    ||||||||||| ||| |||||| || ||||||||||||||||| ||||||    
T  44844151 actctctttttgacactctctctaacactcacttttttattggattaaat 44844102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 183
Target Start/End: Complemental strand, 52223544 - 52223459
Alignment:
Q  98 actcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggttt 183  Q
    ||||||||| | |||| |||||||  | ||| |||||||| ||||||||||| |  ||||||||||| || |||| ||||||||||    
T  52223544 actcactttctaattgacttaaatcgtggtgggtctcacactttggaaatgggttatacttaaagtggtgtgtcacacattggttt 52223459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 165
Target Start/End: Complemental strand, 43657927 - 43657830
Alignment:
Q  66 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtga 165  Q
    |||| |||||||||||||||| | | ||||| ||||||||| | ||||||||||||   ||||||||||||  |||  |||||| | | |||||||||||    
T  43657927 agcaacactctctttttaacactgtttccaacactcactttctaattggcttaaat--cagtgagtctcaccctttaaaaatgggttccacttaaagtga 43657830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 219
Target Start/End: Complemental strand, 297012 - 296861
Alignment:
Q  66 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtga 165  Q
    |||| ||||||||||| |||| |||||| || ||||||||  ||||||| |||||| |  ||| ||||||||  |||||||||| | | |||||| |||     
T  297012 agcaacactctcttttcaacactctctcaaacactcacttcattattggtttaaatgaaggtgggtctcacacattggaaatgggttccacttaaggtgg 296913  T
Q  166 tgagtcatacattggtttcatccaacaagagaatgagtgttgaagagagagtgt 219  Q
    || | |||||| | ||||||||||| |||||| ||||||||  |||||||||||    
T  296912 tgggacatacactagtttcatccaataagagagtgagtgtt--agagagagtgt 296861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 190
Target Start/End: Complemental strand, 15330 - 15241
Alignment:
Q  101 cacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaa 190  Q
    ||||||||||||||||||||| || ||| |||| |||||||| ||||| |||| | ||||| |  || ||||||||||||||| ||||||    
T  15330 cacttttttattggcttaaatcattgtgggtcttacattttgaaaatgaataccatttaaactagtgggtcatacattggttttatccaa 15241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0886 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 116 - 190
Target Start/End: Complemental strand, 3371 - 3297
Alignment:
Q  116 ttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaa 190  Q
    |||||| || ||| |||| ||| |||| |||||||||| | ||||||||  ||||||||||||||||||||||||    
T  3371 ttaaatcattgtgggtcttacactttgaaaatggataccatttaaagtggagagtcatacattggtttcatccaa 3297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University