View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13125_high_5 (Length: 679)
Name: NF13125_high_5
Description: NF13125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13125_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 637; Significance: 0; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 637; E-Value: 0
Query Start/End: Original strand, 18 - 661
Target Start/End: Original strand, 24691697 - 24692341
Alignment:
| Q |
18 |
agaccaattattaaatccataaattgtgagaaaagaaaaacataattgtaaaatatacatgaaaaatgaccagatatgtgaatgagaagcaagaaaaagg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24691697 |
agaccaattattaaatccataaattgtgagaaaagaaaaacataattgtaaaatatacatgaaaaatgaccagatatgtgaatgagaagcaagaaaaagg |
24691796 |
T |
|
| Q |
118 |
aatgatctagtactaaaattgtaggtttcagacaaatctagtctcttaaattaccgaaattaaaaaatgaaattagtcttaaggtaaatgaaaatctagt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24691797 |
aatgatctagtactaaaattgtaggtttcagacaaatctagtctcttaaattaccgaaattaaaaaatgaaattagtcttaaggtaaatgaaaatctagt |
24691896 |
T |
|
| Q |
218 |
cctggtaattgaaaatcatcgacactgtaaggcctttttggatcggtcaatctagtcatcgatatctaatatggtcgagaatttttaatttcagggatat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24691897 |
cctggtaattgaaaatcatcgacactgtaaggcctttttggatcggtcaatctagtcatcgatatctaatatggtcgagaatttttaatttcagggatat |
24691996 |
T |
|
| Q |
318 |
attaaaattttgtcaattgcaggacaaatcccttgccatttcgtgaaatccatattggttttacgaggtgcatggactttgatgacatattagtctaata |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24691997 |
attaaaattttgtcaattgcaggacaaatcccttgccatttcgtgaaatccatattggttttacgaggtgcatggactttgatgacatattagtctaata |
24692096 |
T |
|
| Q |
418 |
gcatgggaaatccacacatgttaagtaaaagtgatgtgttttttaattgaacactaacgacgctactgttcttgcataggtaaggggtatatatatggat |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24692097 |
gcatgggaaatccacacatgttaagtaaaagtgatgtgttttttaattgaacactaacgacgctactgttcttgcataggtaaggggtatatatatggat |
24692196 |
T |
|
| Q |
518 |
c-attcatcgtatcatagagttcgcccacaagattaagtaagcatagtggttatggtcttcactggatttttaatttgtggcattgaacttaatcagatt |
616 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24692197 |
caattcatcgtatcatagagttcgcccacaagattaagtaagcatagtggttatggtcttcactggatttttaatttgtggcattgaacttaatcagatt |
24692296 |
T |
|
| Q |
617 |
ccatttaattctaaagaaggatttgttcgctatgaatcatctgtg |
661 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24692297 |
ccatttaattctaaagaaggatttgttcgctatgaatcatctgtg |
24692341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 20 - 661
Target Start/End: Original strand, 24640498 - 24641130
Alignment:
| Q |
20 |
accaattattaaatccataaattgtgagaaaagaaaaacat-aattgtaaaatatacatgaaaaatgaccagatatgtgaatgagaagcaagaaaaagga |
118 |
Q |
| |
|
|||| ||||||||||| |||||||||| ||||||||||||| ||||| |||||||||||||||| |||||||||| || ||||||||||| | |||||| |
|
|
| T |
24640498 |
accacttattaaatccctaaattgtgataaaagaaaaacatgaattgcaaaatatacatgaaaactgaccagataagtcaatgagaagcaggtgaaagga |
24640597 |
T |
|
| Q |
119 |
atgatctagtactaaaattgtaggtttcagacaaatctagtctcttaaattaccgaaattaaaaaatgaaattagtcttaaggtaaatgaaaatctagtc |
218 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
24640598 |
atgatttagtactaaatttgtaggtttcagacaaatctattctcttaaattaccgaaattaaaaaatgatattagccttaaggt---------------- |
24640681 |
T |
|
| Q |
219 |
ctggtaattgaaaatcatcgacactgtaaggcctttttggatcggtcaatctagtcatcgatatctaatatggtcgagaatttttaatttcagggatata |
318 |
Q |
| |
|
|||||||| || ||| |||||||||||||||| ||||| ||||||||| |||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24640682 |
-----aattgaaattcctcggcactgtaaggcctttt-ggatcagtcaatctaatcattaatatctaatatggttgagaatttttaatttcagggatata |
24640775 |
T |
|
| Q |
319 |
ttaaaattttgtcaattgcaggacaaatc---------ccttgccatttcgtgaaatccatattggttttacgaggtgcatggactttgatgacatatta |
409 |
Q |
| |
|
| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
24640776 |
tcaaaattttgttaattgcaggacaaatcttcctaatcccttgccatttcgtgaaatccatattggttttacgaggtgcaaggactttgatgacatatta |
24640875 |
T |
|
| Q |
410 |
gtctaatagcatgggaaatccacacatgttaagtaaaagtgatgtgttttttaattgaacactaacgacgctactgttcttgcataggtaaggggtatat |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
24640876 |
gtctaatagcatgggaaatccacacatgttaagtaaaagtgatgtgttttttaattgaacactaatgacgctactgttcttgcatagttaaggggtatat |
24640975 |
T |
|
| Q |
510 |
atatggatc-attcatcgtatcatagagttcgcccacaagatt--aagtaagcatagtggttatggtcttcactggatttttaatttgtggcattgaact |
606 |
Q |
| |
|
||||||||| ||||||| ||||||||||||| ||||||||||| ||||| | | |||||||||||||||||||| |||||| ||||||||||||||| | |
|
|
| T |
24640976 |
atatggatcaattcatcatatcatagagttcacccacaagattaaaagtaggtacagtggttatggtcttcactgtattttttatttgtggcattgaatt |
24641075 |
T |
|
| Q |
607 |
taatcagattccatttaattctaaagaaggatttgttcgctatgaatcatctgtg |
661 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
24641076 |
taatcagattccatttaatactaaagaaggatttgttcgctatgtatcatctgtg |
24641130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 22 - 638
Target Start/End: Original strand, 24675599 - 24676203
Alignment:
| Q |
22 |
caattattaaatccataaattgtgaga----aaagaaaaacat-aattgtaaaatatacatgaaaaatgaccagatatgtgaatgagaagcaagaaaaag |
116 |
Q |
| |
|
|||||||||||||| |||||||||||| ||| |||||||| ||||| || | |||||||||||||||||||||| |||||||||||||| | ||||| |
|
|
| T |
24675599 |
caattattaaatccctaaattgtgagacaaaaaaaaaaaacatgaattgcaagaaatacatgaaaaatgaccagataagtgaatgagaagcaggtaaaag |
24675698 |
T |
|
| Q |
117 |
gaatgatctagtactaaaattgtaggtttcagacaaatctagtctcttaaattaccgaaattaaaaaatgaaattagtcttaaggtaaatgaaaatctag |
216 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| |
|
|
| T |
24675699 |
gaatgatttagtcctaaaattgtaggtttcagacaaatctagtctcttaaattaccgaaattcaaaaatgagattagccttaaggt-------------- |
24675784 |
T |
|
| Q |
217 |
tcctggtaattgaaaatcatcgacactgtaaggcctttttggatcggtcaatctagtcatcgatatctaatatggtcgagaatttttaatttcagggata |
316 |
Q |
| |
|
||||||||||||| || | |||||||||||| ||||| |||||||||||||| ||||||||||||| ||||| |||||| |||||||||||| |
|
|
| T |
24675785 |
-------aattgaaaatcattgatgccgtaaggcctttt-ggatctgtcaatctagtcattgatatctaatatgatcgagcattttttatttcagggata |
24675876 |
T |
|
| Q |
317 |
tattaaaattttgtcaattgcaggacaaatc---------ccttgccatttcgtgaaatccatattggtttt-acgaggtgcatggactttgatgacata |
406 |
Q |
| |
|
| | ||||||||| | |||||||||||||| |||||||| || ||||||| |||||||||||| ||||||||||||||||| |||| ||| |
|
|
| T |
24675877 |
tgtcgaaattttgttagttgcaggacaaatcttccttatcccttgccaatttgtgaaattcatattggtttttacgaggtgcatggacttcaatgaaata |
24675976 |
T |
|
| Q |
407 |
ttagtctaatagcatgggaaatccacacatgttaagtaaaagtgatgtgttttttaattgaacactaacgacgctactgttcttgcataggtaaggggta |
506 |
Q |
| |
|
|| |||||||||| || || ||||||||||||||||||||| ||||||||||||||||||||||||| || ||| ||||| |||||||| |
|
|
| T |
24675977 |
atattctaatagcacggcaagtccacacatgttaagtaaaagggatgtgttttttaattgaacactaatgatactagtgttcgtgcatagg--------g |
24676068 |
T |
|
| Q |
507 |
tatatatggatc-attcatcgtatcatagagttcgcccacaagatt--aagtaagcatagtggttatggtcttcactggatttttaatttgtggcattga |
603 |
Q |
| |
|
|||||||||||| | ||||| ||| |||| ||||| ||||| |||| ||||| |||||||||| ||||||||| |||||||||| |||||||||||| | |
|
|
| T |
24676069 |
tatatatggatcaaatcatcatattatagggttcgtccacaggattaaaagtaggcatagtggtcatggtcttcgctggattttttatttgtggcattaa |
24676168 |
T |
|
| Q |
604 |
acttaatcagattccatttaattctaaagaaggat |
638 |
Q |
| |
|
|||| | |||| |||||||| |||||||||||||| |
|
|
| T |
24676169 |
actttagcagagtccatttagttctaaagaaggat |
24676203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 20 - 187
Target Start/End: Original strand, 24686331 - 24686498
Alignment:
| Q |
20 |
accaattattaaatccataaattgtgagaaaagaaaaacata-attgtaaaatatacatgaaaaatgaccagatatgtgaatgagaagcaagaaaaagga |
118 |
Q |
| |
|
|||||| |||||| || |||||||||||||||||||||||| |||| |||| ||||||||||||||||||||| |||||||||||||| | ||||||| |
|
|
| T |
24686331 |
accaataattaaaaccctaaattgtgagaaaagaaaaacatgtattgcaaaaagtacatgaaaaatgaccagataagtgaatgagaagcaggtaaaagga |
24686430 |
T |
|
| Q |
119 |
atgatctagtactaaaattgtaggtttcagacaaatctagtctcttaaattaccgaaattaaaaaatga |
187 |
Q |
| |
|
| || |||| ||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
24686431 |
-taatttagtcctaaatttgtaggtttcagacaaatctaatctcttaaattaccgaaactaaaaaatga |
24686498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 20 - 163
Target Start/End: Original strand, 24713881 - 24714025
Alignment:
| Q |
20 |
accaattattaaatccataaattgtgagaaaagaaaaacat-aattgtaaaatatacatgaaaaatgaccagatatgtgaatgagaagcaagaaaaagga |
118 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| || || ||| | |||| ||||||||||| |||||||||| ||||||||||||| | ||||| | |
|
|
| T |
24713881 |
accaattattaaatccctaaattgtgagaaaagaataagatgaatagcaaaaaatacatgaaaagtgaccagataagtgaatgagaagctggtaaaagaa |
24713980 |
T |
|
| Q |
119 |
atgatctagtactaaaattgtaggtttcagacaaatctagtctct |
163 |
Q |
| |
|
||||| ||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
24713981 |
atgatttagccctaaaattgcaggtttcagacaaatctagtctct |
24714025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 224 - 330
Target Start/End: Original strand, 24677803 - 24677908
Alignment:
| Q |
224 |
aattgaaaatcatcgacactgtaaggcctttttggatcggtcaatctagtcatcgatatctaatatggtcgagaatttttaatttcagggatatattaaa |
323 |
Q |
| |
|
|||||||| || |||||||| ||||||||||| |||||| |||| ||||||| |||||||||||||| |||||||||| |||||||||||||||| ||| |
|
|
| T |
24677803 |
aattgaaattcctcgacactataaggcctttt-ggatcgatcaacctagtcaccgatatctaatatgaccgagaattttgaatttcagggatatatcaaa |
24677901 |
T |
|
| Q |
324 |
attttgt |
330 |
Q |
| |
|
||||||| |
|
|
| T |
24677902 |
attttgt |
24677908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 224 - 417
Target Start/End: Original strand, 24719233 - 24719436
Alignment:
| Q |
224 |
aattgaaaatcatcgacactgtaaggcctttttggatcggtcaatctagtcatcgatatctaatatggtcgagaatttttaatttcagggatatattaaa |
323 |
Q |
| |
|
|||||||| || | ||||| ||||||||||||| |||| |||| ||||||| |||||| |||||| |||||||||| |||||||||||||||| ||| |
|
|
| T |
24719233 |
aattgaaattccttgacaccgtaaggcctttttttatcgatcaagctagtcactgatatcaaatatgaccgagaattttgaatttcagggatatatcaaa |
24719332 |
T |
|
| Q |
324 |
attttgtcaattgcaggaca---------aatcccttgccatttcgtgaaatccatattgg-ttttacgaggtgcatggactttgatgacatattagtct |
413 |
Q |
| |
|
||||| | | |||||||||| ||||||||||||||| ||||||||| |||||| |||| | |||||||||||||| || | ||||||||| |
|
|
| T |
24719333 |
attttcttagttgcaggacaaaacttcctaatcccttgccattttgtgaaatccgtattggttttttcaaggtgcatggacttggaccgcgtattagtct |
24719432 |
T |
|
| Q |
414 |
aata |
417 |
Q |
| |
|
|||| |
|
|
| T |
24719433 |
aata |
24719436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 253 - 345
Target Start/End: Original strand, 24686534 - 24686626
Alignment:
| Q |
253 |
ttttggatcggtcaatctagtcatcgatatctaatatggtcgagaatttttaatttcagggatatattaaaattttgtcaattgcaggacaaa |
345 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||| ||||||||||| |||| || ||||||||| ||||||||| | |||||||||||| |
|
|
| T |
24686534 |
ttttggatcgatcaatctagtcactgatatctaatatgatcgagaattttcaattccaaggatatattgaaattttgttagttgcaggacaaa |
24686626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 582 - 661
Target Start/End: Original strand, 24671704 - 24671783
Alignment:
| Q |
582 |
gatttttaatttgtggcattgaacttaatcagattccatttaattctaaagaaggatttgttcgctatgaatcatctgtg |
661 |
Q |
| |
|
||||||| ||||||| || ||||||| | |||| |||||| ||||||||||||||| |||| ||||||| ||||||||| |
|
|
| T |
24671704 |
gattttttatttgtgacagtgaactttaccagagtccattcaattctaaagaaggagatgttggctatgattcatctgtg |
24671783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 224 - 319
Target Start/End: Original strand, 24714057 - 24714151
Alignment:
| Q |
224 |
aattgaaaatcatcgacactgtaaggcctttttggatcggtcaatctagtcatcgatatctaatatggtcgagaatttttaatttcagggatatat |
319 |
Q |
| |
|
|||||||||||||| |||| ||||||||||| ||||| ||||||||||| ||||||||||||| | ||||||||| ||| ||||| |||||| |
|
|
| T |
24714057 |
aattgaaaatcatcaacaccataaggcctttt-ggatccaccaatctagtcactgatatctaatatgattgagaattttcaatatcaggtatatat |
24714151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 584 - 661
Target Start/End: Original strand, 24678391 - 24678468
Alignment:
| Q |
584 |
tttttaatttgtggcattgaacttaatcagattccatttaattctaaagaaggatttgttcgctatgaatcatctgtg |
661 |
Q |
| |
|
||||| |||||||||||| ||||| ||| ||| | ||| ||||||||||||| |||| ||||||| |||||||||| |
|
|
| T |
24678391 |
ttttttatttgtggcattaaactttatccaatttcgtttgattctaaagaaggtcttgtccgctatggatcatctgtg |
24678468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University