View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13125_high_6 (Length: 663)

Name: NF13125_high_6
Description: NF13125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13125_high_6
NF13125_high_6
[»] chr1 (13 HSPs)
chr1 (349-634)||(26297620-26297905)
chr1 (11-254)||(26298000-26298243)
chr1 (406-564)||(19547013-19547168)
chr1 (434-538)||(46895945-46896046)
chr1 (406-564)||(14758546-14758701)
chr1 (439-531)||(26765974-26766063)
chr1 (409-562)||(44920207-44920357)
chr1 (437-555)||(14890481-14890595)
chr1 (420-518)||(46729205-46729300)
chr1 (434-482)||(30529420-30529468)
chr1 (447-483)||(38294074-38294110)
chr1 (488-563)||(51681628-51681703)
chr1 (410-483)||(36564461-36564534)
[»] chr3 (9 HSPs)
chr3 (405-564)||(7278128-7278284)
chr3 (409-482)||(40629158-40629231)
chr3 (451-552)||(36494174-36494273)
chr3 (404-518)||(49682200-49682311)
chr3 (410-539)||(21813124-21813250)
chr3 (437-483)||(25845944-25845990)
chr3 (431-538)||(29212713-29212817)
chr3 (439-564)||(3973800-3973922)
chr3 (407-564)||(3995924-3996077)
[»] scaffold0172 (1 HSPs)
scaffold0172 (410-564)||(13452-13603)
[»] chr4 (8 HSPs)
chr4 (406-564)||(7388762-7388917)
chr4 (407-479)||(19255092-19255164)
chr4 (439-564)||(49011880-49012002)
chr4 (430-521)||(38380488-38380576)
chr4 (420-467)||(47040657-47040704)
chr4 (437-475)||(25366701-25366739)
chr4 (442-518)||(32893044-32893117)
chr4 (515-560)||(25366619-25366664)
[»] chr5 (5 HSPs)
chr5 (405-538)||(11010257-11010387)
chr5 (446-564)||(35947630-35947745)
chr5 (406-562)||(248425-248579)
chr5 (409-563)||(18988741-18988892)
chr5 (405-467)||(5758643-5758705)
[»] chr8 (9 HSPs)
chr8 (407-527)||(6904192-6904309)
chr8 (410-564)||(4507881-4508032)
chr8 (439-564)||(44042524-44042646)
chr8 (439-564)||(4166482-4166604)
chr8 (435-483)||(41646614-41646662)
chr8 (439-556)||(10565340-10565454)
chr8 (420-517)||(14237162-14237256)
chr8 (405-466)||(27801188-27801249)
chr8 (488-532)||(39312199-39312243)
[»] scaffold0027 (1 HSPs)
scaffold0027 (405-563)||(122428-122583)
[»] chr7 (6 HSPs)
chr7 (437-562)||(3298208-3298329)
chr7 (431-564)||(26638725-26638855)
chr7 (406-556)||(6771832-6771979)
chr7 (405-466)||(44537424-44537485)
chr7 (405-481)||(24934428-24934504)
chr7 (420-466)||(11914856-11914902)
[»] chr2 (6 HSPs)
chr2 (408-564)||(18734339-18734492)
chr2 (433-540)||(32438073-32438177)
chr2 (408-538)||(32770736-32770863)
chr2 (437-483)||(11580416-11580462)
chr2 (490-564)||(37330890-37330964)
chr2 (404-518)||(43745667-43745778)
[»] chr6 (5 HSPs)
chr6 (406-483)||(34530346-34530423)
chr6 (437-562)||(10570937-10571059)
chr6 (408-482)||(31556722-31556796)
chr6 (405-468)||(30509396-30509459)
chr6 (507-559)||(31556811-31556863)


Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 349 - 634
Target Start/End: Complemental strand, 26297905 - 26297620
Alignment:
Q  349 tgtttagcgatagggtctttaccatactaatactctttagaattgttaaaacaagcaagggaaatgctaatgagtgccctaggggcattctttaaggact 448  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26297905 tgtttagcgatagggtctttaccatactaatactctttagaattgttaaaacaagcaagggaaatgctaatgagtgccctaggggcattctttaaggact 26297806  T
Q  449 ttagatagtaagtttttatagaaacttgtgcattcttctatgcatcggaaattgaaatattaagctttttcaattaatagtttcataattgggaatactt 548  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26297805 ttagatagtaagtttttatagaaacttgtgcattcttctatgcatcggaaattgaaatattaagctttttcaatgaatagtttcataattgggaatactt 26297706  T
Q  549 aaagagtgcccttaggcttagggcactcgttagcaaaacccaaattatatatttattctgagaatgaatgtgtcaatttacaagct 634  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26297705 aaagagtgcccttaggcttagggcactcgttagcaaaacccaaattatatatttattctgagaataaatgtgtcaatttacaagct 26297620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 254
Target Start/End: Complemental strand, 26298243 - 26298000
Alignment:
Q  11 cacagacggttttctcagcaactaaccaagatgtaaaagtacgtccttggcttccaaagttgttgacttccgatgcttggctagtgagcaacctgaccta 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26298243 cacagacggttttctcagcaactaaccaagatgtaaaagtacgtccttggcttccaaagttgttgacttccgatgcttggctagtgagcaacctgaccta 26298144  T
Q  111 attatctatttaaaagatagataaaagaaaagtcattgttgaaaacaatctaatgtgagtatacgaagnnnnnnnnnnnnnnnnnggatcggaggattat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||    
T  26298143 attatctatttaaaagatagataaaagaaaagtcattgttgaaaacaatctaatgtgagtatacgaagaaaaaagaaaacaaaaaggatcggaggattat 26298044  T
Q  211 tttctgaaaagaggtcaagaatgattgtgaggtcatacgtttct 254  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  26298043 tttctgaaaagaggtcaataatgattgtgaggtcatacgtttct 26298000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 406 - 564
Target Start/End: Original strand, 19547013 - 19547168
Alignment:
Q  406 agggaaatgctaatgagtgccctaggggcattctttaaggactttagatagtaagtttttatagaaacttgtgcattcttctatgcatcggaaattgaaa 505  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||   ||| ||||||||| |||||||     
T  19547013 agggaaatgctaatgagtgccctaagggcactctttaaggactttatatagtaagtttttatagaaacttgtgca---ttcaatgcatcgggaattgaag 19547109  T
Q  506 tattaagctttttcaattaatagtttcataattgggaatacttaaagagtgcccttagg 564  Q
    ||||   | |||||||| |||| |||| || |||||||| |||||||| ||||||||||    
T  19547110 tattggacattttcaatgaataatttcttacttgggaatccttaaagaatgcccttagg 19547168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 434 - 538
Target Start/End: Complemental strand, 46896046 - 46895945
Alignment:
Q  434 cattctttaaggactttagatagtaagtttttatagaaacttgtgcattcttctatgcatcggaaattgaaatattaagctttttcaattaatagtttca 533  Q
    ||||||||| ||||||||||||||||||||||||||||| || ||||   ||| |||||||||||||||||||||||  |||||||||| |||| ||||     
T  46896046 cattctttacggactttagatagtaagtttttatagaaatttatgca---ttcaatgcatcggaaattgaaatattagactttttcaataaataatttct 46895950  T
Q  534 taatt 538  Q
    |||||    
T  46895949 taatt 46895945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 406 - 564
Target Start/End: Complemental strand, 14758701 - 14758546
Alignment:
Q  406 agggaaatgctaatgagtgccctaggggcattctttaaggactttagatagtaagtttttatagaaacttgtgcattcttctatgcatcggaaattgaaa 505  Q
    ||||||||| ||| |||||| ||| || || ||||||||||||||| ||||||| |||||||  ||| |||||||   ||| |||||||| |||||||||    
T  14758701 agggaaatgttaacgagtgctctaaggacactctttaaggactttaaatagtaaatttttatgaaaaattgtgca---ttcaatgcatcgaaaattgaaa 14758605  T
Q  506 tattaagctttttcaattaatagtttcataattgggaatacttaaagagtgcccttagg 564  Q
    | |||| |||||| ||  |||| |||| ||||||| ||   ||||||||||||||||||    
T  14758604 tgttaaacttttttaaggaataatttcttaattggaaaactttaaagagtgcccttagg 14758546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 439 - 531
Target Start/End: Complemental strand, 26766063 - 26765974
Alignment:
Q  439 tttaaggactttagatagtaagtttttatagaaacttgtgcattcttctatgcatcggaaattgaaatattaagctttttcaattaatagttt 531  Q
    ||||||||||||||||||||||||| |||| |||||| ||||   ||| || |||| |||||||||||||||| |||||||||| ||||||||    
T  26766063 tttaaggactttagatagtaagtttatataaaaacttatgca---ttcaatccatcagaaattgaaatattaaactttttcaatgaatagttt 26765974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 409 - 562
Target Start/End: Complemental strand, 44920357 - 44920207
Alignment:
Q  409 gaaatgctaatgagtgccctaggggcattctttaaggactttagatagtaagtttttatagaaacttgtgcattcttctatgcatcggaaattgaaatat 508  Q
    |||||| ||| |||||||||| ||||| | ||||||||||| | ||||||| ||||||| |||| |||||||   ||| |||||||  |||||||| | |    
T  44920357 gaaatgttaacgagtgccctaagggcactttttaaggacttgaaatagtaaatttttatggaaaattgtgca---ttcaatgcatcataaattgaagtgt 44920261  T
Q  509 taagctttttcaattaatagtttcataattgggaatacttaaagagtgccctta 562  Q
    ||| |||||| ||| |||| |||| |||||| |||  |||||||| ||||||||    
T  44920260 taaacttttttaatgaataatttcttaattgagaaaccttaaagaatgccctta 44920207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 437 - 555
Target Start/End: Original strand, 14890481 - 14890595
Alignment:
Q  437 tctttaaggactttagatagtaagtttttatagaaacttgtgcattcttctatgcatcggaaattgaaatattaagctttttcaattaatagtttcataa 536  Q
    |||||||| | |||||||||||| |||  ||||||| ||||||||||    ||| ||||||||||||| ||||||| |||||||||||||| |||  |||    
T  14890481 tctttaagaattttagatagtaaatttg-atagaaatttgtgcattca---atgtatcggaaattgaagtattaagttttttcaattaataattttttaa 14890576  T
Q  537 ttgggaatacttaaagagt 555  Q
    ||  |||| ||||||||||    
T  14890577 ttaagaatccttaaagagt 14890595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 420 - 518
Target Start/End: Complemental strand, 46729300 - 46729205
Alignment:
Q  420 gagtgccctaggggcattctttaaggactttagatagtaagtttttatagaaacttgtgcattcttctatgcatcggaaattgaaatattaagcttttt 518  Q
    ||||||||||  |||| ||||||||||||||| ||||||| ||||||| |||| |||||||   ||| ||||||||||| ||||| | |||| ||||||    
T  46729300 gagtgccctaaaggcactctttaaggactttaaatagtaaatttttatggaaaattgtgca---ttcaatgcatcggaatttgaagtgttaatcttttt 46729205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 434 - 482
Target Start/End: Complemental strand, 30529468 - 30529420
Alignment:
Q  434 cattctttaaggactttagatagtaagtttttatagaaacttgtgcatt 482  Q
    |||||||||||||||||| ||||||| ||||||| |||| |||||||||    
T  30529468 cattctttaaggactttaaatagtaaatttttatggaaaattgtgcatt 30529420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 447 - 483
Target Start/End: Complemental strand, 38294110 - 38294074
Alignment:
Q  447 ctttagatagtaagtttttatagaaacttgtgcattc 483  Q
    ||||| |||||||||||||||||||||||||||||||    
T  38294110 ctttaaatagtaagtttttatagaaacttgtgcattc 38294074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 488 - 563
Target Start/End: Complemental strand, 51681703 - 51681628
Alignment:
Q  488 atgcatcggaaattgaaatattaagctttttcaattaatagtttcataattgggaatacttaaagagtgcccttag 563  Q
    ||||| |||||||| || | |||| |||||||||  |||| |||| ||||||||||  ||||||||||||||||||    
T  51681703 atgcaccggaaattaaagtgttaaactttttcaaagaataatttcttaattgggaaaccttaaagagtgcccttag 51681628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 483
Target Start/End: Original strand, 36564461 - 36564534
Alignment:
Q  410 aaatgctaatgagtgccctaggggcattctttaaggactttagatagtaagtttttatagaaacttgtgcattc 483  Q
    ||||||||  |||||||||| | ||| ||||||||||||||| |||||||  ||||||  ||| ||||||||||    
T  36564461 aaatgctatcgagtgccctaagagcactctttaaggactttaaatagtaaaattttatgaaaaattgtgcattc 36564534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 405 - 564
Target Start/End: Original strand, 7278128 - 7278284
Alignment:
Q  405 aagggaaatgctaatgagtgccctaggggcattctttaaggactttagatagtaagtttttatagaaacttgtgcattcttctatgcatcggaaattgaa 504  Q
    ||||||||||| ||||||||||||| ||||| || ||||| |||||| ||||||||||||||| ||||||||||||||     |||||| |||||| |||    
T  7278128 aagggaaatgccaatgagtgccctaagggcactccttaagaactttaaatagtaagtttttatcgaaacttgtgcattga---atgcattggaaatcgaa 7278224  T
Q  505 atattaagctttttcaattaatagtttcataattgggaatacttaaagagtgcccttagg 564  Q
    |||||||||||||  ||| ||||||||| |||||| | || |||||||||||||||||||    
T  7278225 atattaagcttttctaatgaatagtttcgtaattgagtatccttaaagagtgcccttagg 7278284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 409 - 482
Target Start/End: Complemental strand, 40629231 - 40629158
Alignment:
Q  409 gaaatgctaatgagtgccctaggggcattctttaaggactttagatagtaagtttttatagaaacttgtgcatt 482  Q
    ||||||||||||||||| ||| |||||||||||||  |||||||||| |||| ||||||| |||||||||||||    
T  40629231 gaaatgctaatgagtgctctaagggcattctttaaaaactttagataataagattttataaaaacttgtgcatt 40629158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 451 - 552
Target Start/End: Complemental strand, 36494273 - 36494174
Alignment:
Q  451 agatagtaagtttttatagaaacttgtgcattcttctatgcatcggaaattgaaatatta-agctttttcaattaatagtttcataattgggaatactta 549  Q
    ||||||||||||||||| ||||||||||||   ||| || ||| |||||||||| ||||| |  ||||||||| ||||||||| ||||||||||| ||||    
T  36494273 agatagtaagtttttatggaaacttgtgca---ttcaatacattggaaattgaagtattagatttttttcaatgaatagtttcttaattgggaatcctta 36494177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 404 - 518
Target Start/End: Complemental strand, 49682311 - 49682200
Alignment:
Q  404 caagggaaatgctaatgagtgccctaggggcattctttaaggactttagatagtaagtttttatagaaacttgtgcattcttctatgcatcggaaattga 503  Q
    ||||||||||| ||| || || |||| | | ||| ||||||||||||| ||||||| |||||||||||| |||||||   ||| |||| |||||||||||    
T  49682311 caagggaaatgttaacgaatgtcctaagagtattttttaaggactttaaatagtaaatttttatagaaaattgtgca---ttcaatgcttcggaaattga 49682215  T
Q  504 aatattaagcttttt 518  Q
    ||| |||| ||||||    
T  49682214 aatgttaaacttttt 49682200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 410 - 539
Target Start/End: Original strand, 21813124 - 21813250
Alignment:
Q  410 aaatgctaatgagtgccctaggggcattctttaaggactttagatagtaagtttttatagaaacttgtgcattcttctatgcatcggaaattgaaatatt 509  Q
    ||||| ||||||||| |||| ||||| |||||||||| |||| ||||||| ||||||| |||| || |||||||    ||||||||||| || || | ||    
T  21813124 aaatgttaatgagtgtcctaagggcactctttaaggattttaaatagtaaatttttatggaaaattatgcattca---atgcatcggaatttaaagtgtt 21813220  T
Q  510 aagctttttcaattaatagtttcataattg 539  Q
    || |||||||||| |||| |||| ||||||    
T  21813221 aaactttttcaatgaataatttcttaattg 21813250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 437 - 483
Target Start/End: Complemental strand, 25845990 - 25845944
Alignment:
Q  437 tctttaaggactttagatagtaagtttttatagaaacttgtgcattc 483  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||    
T  25845990 tctttaaagactttagatagtaagtttttatataaacttgtgcattc 25845944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 431 - 538
Target Start/End: Complemental strand, 29212817 - 29212713
Alignment:
Q  431 gggcattctttaaggactttagatagtaagtttttatagaaacttgtgcattcttctatgcatcggaaattgaaatattaagctttttcaattaatagtt 530  Q
    ||||| ||||||| ||||||||||| ||| ||||||||||||||||||||   ||| || ||||  ||||||||  ||||  |||||||||| |||||||    
T  29212817 gggcactctttaaagactttagatattaaatttttatagaaacttgtgca---ttcaatacatcataaattgaagcattagactttttcaatgaatagtt 29212721  T
Q  531 tcataatt 538  Q
    || |||||    
T  29212720 tcttaatt 29212713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 439 - 564
Target Start/End: Complemental strand, 3973922 - 3973800
Alignment:
Q  439 tttaaggactttagatagtaagtttttatagaaacttgtgcattcttctatgcatcggaaattgaaatattaagctttttcaattaatagtttcataatt 538  Q
    ||||||||||| | ||||||| ||||||| |||| |||||||||     |||||||||||||||||   || | |||||| ||  |||| |||| |||||    
T  3973922 tttaaggacttgaaatagtaaatttttatggaaaattgtgcattta---atgcatcggaaattgaagcgttgaacttttttaaggaataatttcttaatt 3973826  T
Q  539 gggaatacttaaagagtgcccttagg 564  Q
    |||||  |||||||||||| ||||||    
T  3973825 gggaaaccttaaagagtgctcttagg 3973800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 564
Target Start/End: Original strand, 3995924 - 3996077
Alignment:
Q  407 gggaaatgctaatgagtgccctaggggcattcttt-aaggactttagatagtaagtttttatagaaacttgtgcattcttctatgcatcggaaattgaaa 505  Q
    |||||||| ||| |||||||||  ||||| ||||| |||||||| | ||||||| ||||||| |||| |||||||||     |||||||||||||||||     
T  3995924 gggaaatgttaacgagtgccct--gggcactcttttaaggacttgaaatagtaaatttttatggaaaattgtgcattta---atgcatcggaaattgaag 3996018  T
Q  506 tattaagctttttcaattaatagtttcataattgggaatacttaaagagtgcccttagg 564  Q
      || | |||||| ||  |||| || | ||||||||||  |||||||||||| ||||||    
T  3996019 cgttgaacttttttaaggaataattgcttaattgggaaaccttaaagagtgctcttagg 3996077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 410 - 564
Target Start/End: Complemental strand, 13603 - 13452
Alignment:
Q  410 aaatgctaatgagtgccctaggggcattctttaaggactttagatagtaagtttttatagaaacttgtgcattcttctatgcatcggaaattgaaatatt 509  Q
    ||||||||| ||||||| || ||||| ||||||| ||||| |||||||| |||||||| |||||||||||||||    | ||||||||||||||| ||||    
T  13603 aaatgctaacgagtgccttaagggcactctttaaagacttgagatagtaggtttttatggaaacttgtgcattca---aagcatcggaaattgaagtatt 13507  T
Q  510 aagctttttcaattaatagtttcataattgggaatacttaaagagtgcccttagg 564  Q
    |  |||||||||| ||||||||| ||||| |||||  ||||||||||||||||||    
T  13506 agactttttcaatgaatagtttcttaattaggaatctttaaagagtgcccttagg 13452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 7e-26; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 406 - 564
Target Start/End: Complemental strand, 7388917 - 7388762
Alignment:
Q  406 agggaaatgctaatgagtgccctaggggcattctttaaggactttagatagtaagtttttatagaaacttgtgcattcttctatgcatcggaaattgaaa 505  Q
    ||||||||||||||||||||||| ||| || | |||||| |||||||||||||| ||||||| ||||||||||||||     ||||||||||||||| ||    
T  7388917 agggaaatgctaatgagtgccctcgggacactttttaagaactttagatagtaaatttttatggaaacttgtgcattta---atgcatcggaaattggaa 7388821  T
Q  506 tattaagctttttcaattaatagtttcataattgggaatacttaaagagtgcccttagg 564  Q
     ||||  ||||||||||  ||| |||| |||||||||||  || ||||||| |||||||    
T  7388820 cattagactttttcaatggatattttcttaattgggaatctttcaagagtgaccttagg 7388762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 407 - 479
Target Start/End: Original strand, 19255092 - 19255164
Alignment:
Q  407 gggaaatgctaatgagtgccctaggggcattctttaaggactttagatagtaagtttttatagaaacttgtgc 479  Q
    |||||||||||| ||| |||||| ||||| ||||||||||||||| |||||| ||||||||||||||||||||    
T  19255092 gggaaatgctaacgagggccctaagggcactctttaaggactttatatagtaggtttttatagaaacttgtgc 19255164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 439 - 564
Target Start/End: Original strand, 49011880 - 49012002
Alignment:
Q  439 tttaaggactttagatagtaagtttttatagaaacttgtgcattcttctatgcatcggaaattgaaatattaagctttttcaattaatagtttcataatt 538  Q
    ||||||||||||| ||||||||||||| |  |||||||||||||     |||||||| |||||||| |||||| |||||| ||| ||||| ||| | |||    
T  49011880 tttaaggactttaaatagtaagtttttgtgaaaacttgtgcattta---atgcatcgaaaattgaagtattaaacttttttaatgaatagattcttgatt 49011976  T
Q  539 gggaatacttaaagagtgcccttagg 564  Q
       ||| |||||||||||| ||||||    
T  49011977 aaaaatccttaaagagtgcacttagg 49012002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 430 - 521
Target Start/End: Complemental strand, 38380576 - 38380488
Alignment:
Q  430 ggggcattctttaaggactttagatagtaagtttttatagaaacttgtgcattcttctatgcatcggaaattgaaatattaagctttttcaa 521  Q
    |||||||||||||||||||||| ||||||| ||||||| |||| || ||||||     |||| |||||||||||| | |||| |||||||||    
T  38380576 ggggcattctttaaggactttaaatagtaaatttttatggaaaattatgcattta---atgcttcggaaattgaagtgttaaactttttcaa 38380488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 420 - 467
Target Start/End: Original strand, 47040657 - 47040704
Alignment:
Q  420 gagtgccctaggggcattctttaaggactttagatagtaagtttttat 467  Q
    |||||||||||||||| ||||||||||| ||| ||||||| |||||||    
T  47040657 gagtgccctaggggcactctttaaggaccttaaatagtaaatttttat 47040704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 437 - 475
Target Start/End: Complemental strand, 25366739 - 25366701
Alignment:
Q  437 tctttaaggactttagatagtaagtttttatagaaactt 475  Q
    ||||||||||||||| |||||| ||||||||||||||||    
T  25366739 tctttaaggactttatatagtaggtttttatagaaactt 25366701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 442 - 518
Target Start/End: Complemental strand, 32893117 - 32893044
Alignment:
Q  442 aaggactttagatagtaagtttttatagaaacttgtgcattcttctatgcatcggaaattgaaatattaagcttttt 518  Q
    |||||||||| |||||||  ||||||||||| |||||||   ||| |||||||| |||||||||| |||| ||||||    
T  32893117 aaggactttaaatagtaaacttttatagaaaattgtgca---ttcaatgcatcgaaaattgaaatgttaaacttttt 32893044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 515 - 560
Target Start/End: Complemental strand, 25366664 - 25366619
Alignment:
Q  515 ttttcaattaatagtttcataattgggaatacttaaagagtgccct 560  Q
    |||||||| ||||||||  ||||||||||| |||||||||||||||    
T  25366664 ttttcaatgaatagttttttaattgggaatccttaaagagtgccct 25366619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 7e-23; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 405 - 538
Target Start/End: Complemental strand, 11010387 - 11010257
Alignment:
Q  405 aagggaaatgctaatgagtgccctaggggcattctttaaggactttagatagtaagtttttatagaaacttgtgcattcttctatgcatcggaaattgaa 504  Q
    |||||||||||||| ||||| |||| ||||||| ||||||||||| |||||||| |||||||| |||| |||||   | ||| ||||||| |||||||||    
T  11010387 aagggaaatgctaacgagtggcctaagggcattttttaaggacttcagatagtatgtttttatggaaagttgtg---tattcaatgcatcagaaattgaa 11010291  T
Q  505 atattaagctttttcaattaatagtttcataatt 538  Q
     |||||  |||||||||| ||||||||| |||||    
T  11010290 gtattagactttttcaatgaatagtttcttaatt 11010257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 446 - 564
Target Start/End: Complemental strand, 35947745 - 35947630
Alignment:
Q  446 actttagatagtaagtttttatagaaacttgtgcattcttctatgcatcggaaattgaaatattaagctttttcaattaatagtttcataattgggaata 545  Q
    |||||| ||||||||  |||||||||| ||||| |||||   |||||||| |||||||||||||||| |||| |||| ||||||||| | |||| | ||     
T  35947745 actttaaatagtaagggtttatagaaatttgtgaattct---atgcatcgaaaattgaaatattaagtttttccaatgaatagtttcttgattgagtatc 35947649  T
Q  546 cttaaagagtgcccttagg 564  Q
    ||||| || ||||||||||    
T  35947648 cttaatgactgcccttagg 35947630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 406 - 562
Target Start/End: Original strand, 248425 - 248579
Alignment:
Q  406 agggaaatgctaatgagtgccctaggggcattctttaaggactttagatagtaagtttttatagaaacttgtgcattcttctatgcatcggaaattgaaa 505  Q
    ||||||||| |||  |||||| || ||||| ||||||||||||| | ||||||| ||||||| |||| |||||||   ||| || ||||||||||||||     
T  248425 agggaaatgttaactagtgccttaagggcactctttaaggacttgaaatagtaaatttttatggaaaattgtgca---ttcaatacatcggaaattgaag 248521  T
Q  506 tattaagc-tttttcaattaatagtttcataattgggaatacttaaagagtgccctta 562  Q
    | |||| | ||||| ||  |||| |||| |||||| |||  |||||||||||||||||    
T  248522 tgttaaacttttttaaagaaataatttcttaattgagaaaccttaaagagtgccctta 248579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 409 - 563
Target Start/End: Complemental strand, 18988892 - 18988741
Alignment:
Q  409 gaaatgctaatgagtgccctaggggcattctttaaggactttagatagtaagtttttatagaaacttgtgcattcttctatgcatcggaaattgaaatat 508  Q
    |||||| ||| |||||||||| ||| | | ||||||||| ||||||||||| |||||||  |||||| ||||   ||| |||||| ||||||| || |||    
T  18988892 gaaatgataacgagtgccctaagggtactttttaaggacattagatagtaaatttttatgaaaacttatgca---ttcaatgcattggaaatttaagtat 18988796  T
Q  509 taagctttttcaattaatagtttcataattgggaatacttaaagagtgcccttag 563  Q
    ||  ||||||  || ||||| ||  ||| | ||||| || |||||||||||||||    
T  18988795 tagacttttttgatgaatagatttttaagtaggaatcctcaaagagtgcccttag 18988741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 405 - 467
Target Start/End: Complemental strand, 5758705 - 5758643
Alignment:
Q  405 aagggaaatgctaatgagtgccctaggggcattctttaaggactttagatagtaagtttttat 467  Q
    ||||||||| |||| ||||||||  |||||| | ||||||||||||| || ||||||||||||    
T  5758705 aagggaaatactaacgagtgcccccggggcactttttaaggactttaaatggtaagtttttat 5758643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 407 - 527
Target Start/End: Complemental strand, 6904309 - 6904192
Alignment:
Q  407 gggaaatgctaatgagtgccctaggggcattctttaaggactttagatagtaagtttttatagaaacttgtgcattcttctatgcatcggaaattgaaat 506  Q
    ||||||||||||||||||| ||  ||||| ||||||| ||||||||||||||| ||||||| |||||||||||    ||| |||||||||||||||||      
T  6904309 gggaaatgctaatgagtgctcttagggcactctttaaagactttagatagtaattttttatggaaacttgtgc---gttcaatgcatcggaaattgaagc 6904213  T
Q  507 attaagctttttcaattaata 527  Q
    ||||| |||||||||| ||||    
T  6904212 attaaactttttcaatgaata 6904192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 410 - 564
Target Start/End: Original strand, 4507881 - 4508032
Alignment:
Q  410 aaatgctaatgagtgccctaggggcattctttaaggactttagatagtaagtttttatagaaacttgtgcattcttctatgcatcggaaattgaaatatt 509  Q
    |||||||||||| ||||||| || || | |||||| ||||||||| |||||||||||| |||||||  |||||     ||||||| |||||||||||||     
T  4507881 aaatgctaatgaatgccctaaggacactttttaagaactttagatggtaagtttttatggaaacttacgcattta---atgcatcagaaattgaaatatg 4507977  T
Q  510 aagctttttcaattaatagtttcataattgggaatacttaaagagtgcccttagg 564  Q
    | | ||||||||| ||||||||| ||||||   || |||||||||||||||||||    
T  4507978 atgttttttcaataaatagtttcttaattgactatccttaaagagtgcccttagg 4508032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 439 - 564
Target Start/End: Complemental strand, 44042646 - 44042524
Alignment:
Q  439 tttaaggactttagatagtaagtttttatagaaacttgtgcattcttctatgcatcggaaattgaaatattaagctttttcaattaatagtttcataatt 538  Q
    ||||| || |||| |||||||||||||||||||| ||||||||||    |||||| |||||||||| |||| | |||||||||| ||||||||| |||||    
T  44042646 tttaaagattttaaatagtaagtttttatagaaatttgtgcattca---atgcattggaaattgaagtattgaactttttcaatgaatagtttcttaatt 44042550  T
Q  539 gggaatacttaaagagtgcccttagg 564  Q
      |||| ||||||||||| |||||||    
T  44042549 atgaatccttaaagagtgtccttagg 44042524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 439 - 564
Target Start/End: Complemental strand, 4166604 - 4166482
Alignment:
Q  439 tttaaggactttagatagtaagtttttatagaaacttgtgcattcttctatgcatcggaaattgaaatattaagctttttcaattaatagtttcataatt 538  Q
    ||||| |||||||||||  |||||||||| |||||||||||||||    ||| || ||||||||||||||| | |||||||||| |||| |||| | |||    
T  4166604 tttaaagactttagatataaagtttttatggaaacttgtgcattca---atgtattggaaattgaaatattgaactttttcaatgaataatttcttgatt 4166508  T
Q  539 gggaatacttaaagagtgcccttagg 564  Q
      |||| |||||||||||||||||||    
T  4166507 atgaatccttaaagagtgcccttagg 4166482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 435 - 483
Target Start/End: Complemental strand, 41646662 - 41646614
Alignment:
Q  435 attctttaaggactttagatagtaagtttttatagaaacttgtgcattc 483  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||    
T  41646662 attctttaaggactttagatagtaagtttttatgaaaacttgtgcattc 41646614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 439 - 556
Target Start/End: Complemental strand, 10565454 - 10565340
Alignment:
Q  439 tttaaggactttagatagtaagtttttatagaaacttgtgcattcttctatgcatcggaaattgaaatattaagctttttcaattaatagtttcataatt 538  Q
    ||||| ||||||||||||||| ||||||| |||| ||||||||||    || ||||  ||||| || |||||  |||||||||| ||||||||| |||||    
T  10565454 tttaaagactttagatagtaaatttttatggaaatttgtgcattca---atacatcaaaaattaaagtattagactttttcaatgaatagtttcttaatt 10565358  T
Q  539 gggaatacttaaagagtg 556  Q
      |||| |||||||||||    
T  10565357 tagaattcttaaagagtg 10565340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 420 - 517
Target Start/End: Complemental strand, 14237256 - 14237162
Alignment:
Q  420 gagtgccctaggggcattctttaaggactttagatagtaagtttttatagaaacttgtgcattcttctatgcatcggaaattgaaatattaagctttt 517  Q
    |||||||||  | ||||||||||||||||||| ||||||| ||||||| |||| |||||||||     ||||||||||||||||| | |||| |||||    
T  14237256 gagtgcccttagagcattctttaaggactttaaatagtaaatttttatggaaaattgtgcattta---atgcatcggaaattgaagtgttaaactttt 14237162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 466
Target Start/End: Original strand, 27801188 - 27801249
Alignment:
Q  405 aagggaaatgctaatgagtgccctaggggcattctttaaggactttagatagtaagttttta 466  Q
    |||||||||| ||| |||||| || |||| | |||||||| |||||| ||||||||||||||    
T  27801188 aagggaaatgttaacgagtgctcttggggtactctttaagcactttaaatagtaagttttta 27801249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 488 - 532
Target Start/End: Original strand, 39312199 - 39312243
Alignment:
Q  488 atgcatcggaaattgaaatattaagctttttcaattaatagtttc 532  Q
    ||||||||||||||||| |||||| |||||||||| |||| ||||    
T  39312199 atgcatcggaaattgaagtattaaactttttcaatgaataatttc 39312243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 405 - 563
Target Start/End: Original strand, 122428 - 122583
Alignment:
Q  405 aagggaaatgctaatgagtgccctaggggcattctttaaggactttagatagtaagtttttatagaaacttgtgcattcttctatgcatcggaaattgaa 504  Q
    |||||||||| ||| ||||||| |  |||||||||||||||| ||||  |||||| ||||||| |||| |||||||||     |||||||||||||| ||    
T  122428 aagggaaatgttaacgagtgcctttagggcattctttaaggattttaagtagtaattttttatggaaaattgtgcattta---atgcatcggaaattaaa 122524  T
Q  505 atattaagctttttcaattaatagtttcataattgggaatacttaaagagtgcccttag 563  Q
     | |||| |||||||||  |||| |||| |||||| |||  ||||||||||||||||||    
T  122525 gtgttaaactttttcaaagaataatttcttaattgagaaatcttaaagagtgcccttag 122583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 437 - 562
Target Start/End: Complemental strand, 3298329 - 3298208
Alignment:
Q  437 tctttaaggactttagatagtaagtttttatagaaacttgtgcattcttctatgcatcggaaattgaaatattaagctttttcaattaatagtttcataa 536  Q
    |||||||| |||||||||  ||| ||||||| |||||||  ||||||    ||||||| ||||||||||||| ||||||||||||| ||||||||| |||    
T  3298329 tctttaagaactttagatgttaaatttttatggaaacttaagcattca---atgcatcagaaattgaaatatgaagctttttcaatgaatagtttcttaa 3298233  T
Q  537 ttgggaatacttaaagagtgccctta 562  Q
    ||| | || |||||||||||||||||    
T  3298232 ttgagtat-cttaaagagtgccctta 3298208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 431 - 564
Target Start/End: Complemental strand, 26638855 - 26638725
Alignment:
Q  431 gggcattctttaaggactttagatagtaagtttttatagaaacttgtgcattcttctatgcatcggaaattgaaatattaagctttttcaattaatagtt 530  Q
    ||||| |||||| |||||||| |||||||||||| || ||||| |||| || |    |||||||  |||||||| ||||||| ||||||||| ||||||     
T  26638855 gggcactctttatggactttaaatagtaagtttt-atggaaacatgtgtatncaa--atgcatcaaaaattgaagtattaagttttttcaatgaatagtc 26638759  T
Q  531 tcataattgggaatacttaaagagtgcccttagg 564  Q
    || |||||| |||| |||||||||||||||||||    
T  26638758 tcttaattgagaatccttaaagagtgcccttagg 26638725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 406 - 556
Target Start/End: Complemental strand, 6771979 - 6771832
Alignment:
Q  406 agggaaatgctaatgagtgccctaggggcattctttaaggactttagatagtaagtttttatagaaacttgtgcattcttctatgcatcggaaattgaaa 505  Q
    ||||||||| ||  |||| ||||| || || ||||||||||||||| ||||||| ||||||| |||| ||||||||||    ||  ||||||||||||||    
T  6771979 agggaaatgttagcgagtaccctaaggacactctttaaggactttaaatagtaaatttttatggaaaattgtgcattca---atatatcggaaattgaaa 6771883  T
Q  506 tattaagctttttcaattaatagtttcataattgggaatacttaaagagtg 556  Q
    |  | || ||||||||  |||| |||| |||||| |||  |||||||||||    
T  6771882 tggtgagttttttcaaagaataatttcttaattgagaaaccttaaagagtg 6771832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 405 - 466
Target Start/End: Complemental strand, 44537485 - 44537424
Alignment:
Q  405 aagggaaatgctaatgagtgccctaggggcattctttaaggactttagatagtaagttttta 466  Q
    |||||||||| ||| ||||||||  |||||| |||||||| |||||| ||||||||||||||    
T  44537485 aagggaaatgttaacgagtgcccccggggcactctttaagcactttaaatagtaagttttta 44537424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 405 - 481
Target Start/End: Original strand, 24934428 - 24934504
Alignment:
Q  405 aagggaaatgctaatgagtgccctaggggcattctttaaggactttagatagtaagtttttatagaaacttgtgcat 481  Q
    |||| ||||||||| |||| | ||| |  |||| ||||||||||||||||||| | |||||||| ||||||||||||    
T  24934428 aaggaaaatgctaacgagttctctaagaacattatttaaggactttagatagtgaatttttatataaacttgtgcat 24934504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 420 - 466
Target Start/End: Original strand, 11914856 - 11914902
Alignment:
Q  420 gagtgccctaggggcattctttaaggactttagatagtaagttttta 466  Q
    ||||| |||| | ||| ||||||||||||||||||||||||||||||    
T  11914856 gagtgtcctaagagcactctttaaggactttagatagtaagttttta 11914902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 408 - 564
Target Start/End: Complemental strand, 18734492 - 18734339
Alignment:
Q  408 ggaaatgctaatgagtgccctaggggcattctttaaggactttagatagtaagtttttatagaaacttgtgcattcttctatgcatcggaaattgaaata 507  Q
    ||||||| | |||||||||||| || |||||| ||||||||| | ||||||| |||||||  ||| |||||||   ||| ||| ||||||||||||| |     
T  18734492 ggaaatgtttatgagtgccctaaggacattctctaaggacttgaaatagtaaatttttatgaaaaattgtgca---ttcaatgtatcggaaattgaagtg 18734396  T
Q  508 ttaagctttttcaattaatagtttcataattgggaatacttaaagagtgcccttagg 564  Q
    |||| |||||| ||  |||| |||| |||||| |||  |||| |||||||| |||||    
T  18734395 ttaaacttttttaaggaataatttcttaattgagaaaccttagagagtgcctttagg 18734339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 433 - 540
Target Start/End: Original strand, 32438073 - 32438177
Alignment:
Q  433 gcattctttaaggactttagatagtaagtttttatagaaacttgtgcattcttctatgcatcggaaattgaaatattaagctttttcaattaatagtttc 532  Q
    ||||||||||||||||||| ||||||| ||||||| |||| |||||||||     ||||||||||||||||| | |||| | ||||||| ||||| |||     
T  32438073 gcattctttaaggactttaaatagtaaatttttatggaaaattgtgcattta---atgcatcggaaattgaagtgttaaaccttttcaaataataatttt 32438169  T
Q  533 ataattgg 540  Q
     |||||||    
T  32438170 ttaattgg 32438177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 408 - 538
Target Start/End: Original strand, 32770736 - 32770863
Alignment:
Q  408 ggaaatgctaatgagtgccctaggggcattctttaaggactttagatagtaagtttttatagaaacttgtgcattcttctatgcatcggaaattgaaata 507  Q
    ||||||| ||||||||||  || |  ||||||||||||||||||||||||||  |||||| |||| || |||     || ||||||  ||||||||| ||    
T  32770736 ggaaatgttaatgagtgcgttaagaacattctttaaggactttagatagtaaaattttatggaaatttatgc---ggtcaatgcattcgaaattgaagta 32770832  T
Q  508 ttaagctttttcaattaatagtttcataatt 538  Q
    ||||| ||||||||| |||| |||| |||||    
T  32770833 ttaagttttttcaataaataatttcttaatt 32770863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 437 - 483
Target Start/End: Original strand, 11580416 - 11580462
Alignment:
Q  437 tctttaaggactttagatagtaagtttttatagaaacttgtgcattc 483  Q
    ||||||| ||||||||||||||||||||||| ||||| |||| ||||    
T  11580416 tctttaaagactttagatagtaagtttttatggaaacatgtgtattc 11580462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 490 - 564
Target Start/End: Complemental strand, 37330964 - 37330890
Alignment:
Q  490 gcatcggaaattgaaatattaagctttttcaattaatagtttcataattgggaatacttaaagagtgcccttagg 564  Q
    ||||||||||||||||||||| |  |||||||| ||||||||  |||||| | || ||||||||||  |||||||    
T  37330964 gcatcggaaattgaaatattatgtcttttcaatgaatagttttttaattgagtatccttaaagagtatccttagg 37330890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 404 - 518
Target Start/End: Complemental strand, 43745778 - 43745667
Alignment:
Q  404 caagggaaatgctaatgagtgccctaggggcattctttaaggactttagatagtaagtttttatagaaacttgtgcattcttctatgcatcggaaattga 503  Q
    ||||||||||| ||| |||||||||| ||||| ||||||||   || | |||||||| ||||||  |||| ||||||   ||| |||||| | |||||||    
T  43745778 caagggaaatgttaacgagtgccctaagggcactctttaagagtttaaaatagtaaggttttatgaaaacgtgtgca---ttcaatgcattgaaaattga 43745682  T
Q  504 aatattaagcttttt 518  Q
    ||| || ||||||||    
T  43745681 aatgtttagcttttt 43745667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 406 - 483
Target Start/End: Original strand, 34530346 - 34530423
Alignment:
Q  406 agggaaatgctaatgagtgccctaggggcattctttaaggactttagatagtaagtttttatagaaacttgtgcattc 483  Q
    ||||||||| ||| |||||||||| | |||||||||||| |||||| |||||| |||||||| |||| |||| |||||    
T  34530346 agggaaatgttaacgagtgccctaagagcattctttaagcactttaaatagtatgtttttatggaaaattgtacattc 34530423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 437 - 562
Target Start/End: Original strand, 10570937 - 10571059
Alignment:
Q  437 tctttaaggactttagatagtaagtttttatagaaacttgtgcattcttctatgcatcggaaattgaaatattaagctttttcaattaatagtttcataa 536  Q
    ||||||| |||||||  |||||| |||||||||||| |||| |||||    |||||||  |||||||| |||| | | |||||||| ||||||||| |||    
T  10570937 tctttaaagactttatttagtaaatttttatagaaatttgttcattca---atgcatcaaaaattgaagtattgaacattttcaatgaatagtttcttaa 10571033  T
Q  537 ttgggaatacttaaagagtgccctta 562  Q
    ||  |||| ||||||||||| |||||    
T  10571034 ttaagaatccttaaagagtgtcctta 10571059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 482
Target Start/End: Original strand, 31556722 - 31556796
Alignment:
Q  408 ggaaatgctaatgagtgccctaggggcattctttaaggactttagatagtaagtttttatagaaacttgtgcatt 482  Q
    |||||||||||||||||   || ||||||||||||| || |||||||||||| |||||||  ||| |||||||||    
T  31556722 ggaaatgctaatgagtgttataagggcattctttaaagattttagatagtaaatttttatgtaaatttgtgcatt 31556796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 405 - 468
Target Start/End: Complemental strand, 30509459 - 30509396
Alignment:
Q  405 aagggaaatgctaatgagtgccctaggggcattctttaaggactttagatagtaagtttttata 468  Q
    |||||||||| ||||||||||| | |||||| |||||||||||| || |||| |||| ||||||    
T  30509459 aagggaaatgttaatgagtgccttcggggcaatctttaaggactataaatagcaagtatttata 30509396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 559
Target Start/End: Original strand, 31556811 - 31556863
Alignment:
Q  507 attaagctttttcaattaatagtttcataattgggaatacttaaagagtgccc 559  Q
    ||||| ||||||||||  |||||||| |||||| |||| ||||||||||||||    
T  31556811 attaaactttttcaatggatagtttcttaattgagaattcttaaagagtgccc 31556863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University