View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13125_high_7 (Length: 659)
Name: NF13125_high_7
Description: NF13125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13125_high_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 12818560 - 12818810
Alignment:
| Q |
1 |
tcagccaaagaaatacccatttgagcaggatctagggtttcagaaattgaactcatcattgaagatgaattcatttgattctctttttgttcttgttctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
12818560 |
tcagccaaagaaatacccatttgagcaggatctagggtttcagaaattgaactcatcattgaagatgaattcatttgattctcttcttgttcttgttctt |
12818659 |
T |
|
| Q |
101 |
gttcaccacgtggtgaatttgaatcagacattgaaattttgaaagttagggtttcggagaagaaataattgagagaaagagaagtttaggatttccaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12818660 |
gttcaccacgtggtgaatttgaatcagacattgaaattttgaaagttagggtttcgaagaagaaataattgagagaaagagaagtttaggatttccaaga |
12818759 |
T |
|
| Q |
201 |
agtgaagtgaaattcttggttggttttaataaattagggttttgaagtgat |
251 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
12818760 |
agtgaagtgaaattcttggttggttataataaattagggttttgaagtgat |
12818810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 552 - 659
Target Start/End: Original strand, 12819111 - 12819218
Alignment:
| Q |
552 |
ggaattataataagtttcatatttttgaataaaaaattatatggtaaatgacaacagnnnnnnngcgtagagaacaagctgtcaaacaaatatatatttt |
651 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
12819111 |
ggaattataataagtttcatatttttgaataaaaaattatatggtaaatgacaacagtttttttgcgtagagaacaagctgtcaaacaaatatatatttt |
12819210 |
T |
|
| Q |
652 |
taaagaaa |
659 |
Q |
| |
|
|||||||| |
|
|
| T |
12819211 |
taaagaaa |
12819218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 404 - 464
Target Start/End: Original strand, 12818963 - 12819023
Alignment:
| Q |
404 |
atagattttgatagatactgtaaaccatgtctatggtgcgtttttataggtgaaaattatg |
464 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12818963 |
atagattttgatagatactgtaaaccatgtctatggtgcgtttttataggtgaaaattatg |
12819023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University