View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13125_low_10 (Length: 549)

Name: NF13125_low_10
Description: NF13125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13125_low_10
NF13125_low_10
[»] chr4 (7 HSPs)
chr4 (15-398)||(10977763-10978141)
chr4 (393-497)||(10782990-10783094)
chr4 (138-249)||(38937462-38937573)
chr4 (144-251)||(46551147-46551254)
chr4 (280-329)||(38937384-38937433)
chr4 (444-480)||(9263946-9263982)
chr4 (444-480)||(11520081-11520117)
[»] chr6 (5 HSPs)
chr6 (332-421)||(24253059-24253148)
chr6 (332-429)||(22566920-22567017)
chr6 (440-497)||(10821648-10821705)
chr6 (444-480)||(30355698-30355734)
chr6 (441-497)||(34479564-34479620)
[»] scaffold0041 (1 HSPs)
scaffold0041 (138-226)||(93605-93692)
[»] chr7 (9 HSPs)
chr7 (138-226)||(40872590-40872677)
chr7 (444-496)||(2454792-2454844)
chr7 (441-497)||(9863333-9863389)
chr7 (444-497)||(5221620-5221673)
chr7 (444-493)||(5485069-5485118)
chr7 (441-482)||(8158442-8158483)
chr7 (444-497)||(9501414-9501467)
chr7 (444-479)||(8038503-8038538)
chr7 (444-497)||(4900958-4901011)
[»] chr8 (7 HSPs)
chr8 (328-417)||(24537491-24537580)
chr8 (444-497)||(24851494-24851547)
chr8 (445-497)||(30487283-30487335)
chr8 (450-497)||(27305232-27305279)
chr8 (444-495)||(31015056-31015107)
chr8 (444-497)||(24114834-24114887)
chr8 (357-417)||(26825904-26825964)
[»] chr3 (6 HSPs)
chr3 (341-424)||(11224049-11224131)
chr3 (444-498)||(13907216-13907270)
chr3 (364-417)||(16230717-16230770)
chr3 (342-417)||(3398548-3398623)
chr3 (355-405)||(3387140-3387190)
chr3 (444-494)||(25779547-25779597)
[»] chr5 (7 HSPs)
chr5 (262-330)||(29007502-29007570)
chr5 (350-417)||(20550067-20550134)
chr5 (444-497)||(19762205-19762258)
chr5 (364-417)||(24187819-24187872)
chr5 (445-496)||(20103516-20103567)
chr5 (444-497)||(23013662-23013715)
chr5 (444-496)||(28279731-28279783)
[»] scaffold0427 (1 HSPs)
scaffold0427 (342-427)||(4736-4821)
[»] scaffold0085 (1 HSPs)
scaffold0085 (444-497)||(23458-23511)
[»] chr1 (4 HSPs)
chr1 (444-496)||(27910318-27910370)
chr1 (440-482)||(26581069-26581111)
chr1 (445-494)||(20033730-20033779)
chr1 (447-496)||(25425766-25425815)
[»] chr2 (3 HSPs)
chr2 (353-390)||(29652690-29652727)
chr2 (441-493)||(12556737-12556789)
chr2 (445-497)||(22623114-22623166)
[»] scaffold0472 (1 HSPs)
scaffold0472 (138-226)||(8705-8792)


Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 15 - 398
Target Start/End: Complemental strand, 10978141 - 10977763
Alignment:
Q  15 cataggtaataatagcatttaatttagatcaaattttcattgcataatagtatttaggtcattagagtcaatcgagtcaagtaaccaatttggaatcgac 114  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  10978141 cataggtaataatagcatttaatttagatcaaatttgcattgcataatagtatttaggtcattagagtcaatcgagtcaagtaaccaatttggaatcaac 10978042  T
Q  115 accaacctaaacaatttaaaattgagcgctgctaaatccagcgacaattcttttcaagaaaattccacgaagtacaatattgctttaataaaacgtgctt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10978041 accaacctaaacaatttaaaattgagcgctgctaaatccagcgacaattcttttcaagaaaattccacgaagtacaatattgctttaataaaacgtgctt 10977942  T
Q  215 aaaccgctcaatgaatgaaattcgggatttggtggaagnnnnnnnnnggtagcttgtattgtacggttgtgaagaattcgtgataaaagttatcgcaata 314  Q
    ||||||||||||||||||||||| |||||||||||||          ||| ||||||||||||| ||  |||||||||| |||||||||||||||| |||    
T  10977941 aaaccgctcaatgaatgaaattccggatttggtggaa-----aaaaaggttgcttgtattgtacagtcatgaagaattcctgataaaagttatcgcgata 10977847  T
Q  315 tcaagcattacgctttaaaattaagtgcaaccttatctttgttaggaaattttctcgaacttgttattattgtgtggaataggt 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10977846 tcaagcattacgctttaaaattaagtgcaaccttatctttgttaggaaattttctcgaacttgttattattgtgtggaataggt 10977763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 393 - 497
Target Start/End: Complemental strand, 10783094 - 10782990
Alignment:
Q  393 ataggtaaccatggaagcaaccaaagacgcacaagtggtgacaatcggaatgaagcggttcaagaggaaggaaaacactaggagcttcaaagaaggagtc 492  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||    
T  10783094 ataggtaaccatggaaacaaccaaagacgcataagtggtgacaatcggaatgaagtggttcaagaggaaggaaagcactaggagcttcaaaggaggagtc 10782995  T
Q  493 tctct 497  Q
    |||||    
T  10782994 tctct 10782990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 138 - 249
Target Start/End: Complemental strand, 38937573 - 38937462
Alignment:
Q  138 gagcgctgctaaatccagcgacaattcttttcaagaaaattccacgaagtacaatattgctttaataaaacgtgcttaaaccgctcaatgaatgaaattc 237  Q
    |||||| |||||||||||| ||||||||||||   ||||||||||||||| |||||||||||||||||||||||  ||||||||||||| |   ||||||    
T  38937573 gagcgccgctaaatccagccacaattcttttcccaaaaattccacgaagtgcaatattgctttaataaaacgtggctaaaccgctcaatcacctaaattc 38937474  T
Q  238 gggatttggtgg 249  Q
     |||||||||||    
T  38937473 cggatttggtgg 38937462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 251
Target Start/End: Original strand, 46551147 - 46551254
Alignment:
Q  144 tgctaaatccagcgacaattcttttcaagaaaattccacgaagtacaatattgctttaataaaacgtgcttaaaccgctcaatgaatgaaattcgggatt 243  Q
    |||||||||||||||||||  |||||   |||||||||||||   || | ||||||||| ||||||||| ||||| ||||||| |   ||||||  ||||    
T  46551147 tgctaaatccagcgacaatcattttcccaaaaattccacgaaccgcatttttgctttaagaaaacgtgcctaaactgctcaatcacctaaattccagatt 46551246  T
Q  244 tggtggaa 251  Q
    ||||||||    
T  46551247 tggtggaa 46551254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 329
Target Start/End: Complemental strand, 38937433 - 38937384
Alignment:
Q  280 gttgtgaagaattcgtgataaaagttatcgcaatatcaagcattacgctt 329  Q
    ||||||||  |||||||||||||||| |||| ||||||||||||| ||||    
T  38937433 gttgtgaaacattcgtgataaaagttgtcgcgatatcaagcattatgctt 38937384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 444 - 480
Target Start/End: Original strand, 9263946 - 9263982
Alignment:
Q  444 gaagcggttcaagaggaaggaaaacactaggagcttc 480  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  9263946 gaagtggttcaagaggaaggcaaacactaggagcttc 9263982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 444 - 480
Target Start/End: Original strand, 11520081 - 11520117
Alignment:
Q  444 gaagcggttcaagaggaaggaaaacactaggagcttc 480  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  11520081 gaagtggttcaagaggaaggtaaacactaggagcttc 11520117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 6e-29; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 332 - 421
Target Start/End: Original strand, 24253059 - 24253148
Alignment:
Q  332 aaattaagtgcaaccttatctttgttaggaaattttctcgaacttgttattattgtgtggaataggtaaccatggaagcaaccaaagacg 421  Q
    |||| ||| ||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||    
T  24253059 aaatcaagcgcaaccttatcattgttaggaaattttctcgaacttgtgattattgtgtgaaataggtaatcatggaagcaaccaaagacg 24253148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 332 - 429
Target Start/End: Original strand, 22566920 - 22567017
Alignment:
Q  332 aaattaagtgcaaccttatctttgttaggaaattttctcgaacttgttattattgtgtggaataggtaaccatggaagcaaccaaagacgcacaagtg 429  Q
    |||| ||| ||||||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||| ||  |||||||| |||||||||||||||    
T  22566920 aaatcaagagcaaccttatcattgttaggaaattttctcgagcttgtgattattgtgtgaaataggtaatcacagaagcaactaaagacgcacaagtg 22567017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 440 - 497
Target Start/End: Complemental strand, 10821705 - 10821648
Alignment:
Q  440 gaatgaagcggttcaagaggaaggaaaacactaggagcttcaaagaaggagtctctct 497  Q
    |||||||||||||||||||||||| |||||||| |||||| || | ||||||||||||    
T  10821705 gaatgaagcggttcaagaggaaggcaaacactaagagctttaagggaggagtctctct 10821648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 444 - 480
Target Start/End: Complemental strand, 30355734 - 30355698
Alignment:
Q  444 gaagcggttcaagaggaaggaaaacactaggagcttc 480  Q
    |||||||||||||||||||| || |||||||||||||    
T  30355734 gaagcggttcaagaggaaggcaagcactaggagcttc 30355698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 497
Target Start/End: Complemental strand, 34479620 - 34479564
Alignment:
Q  441 aatgaagcggttcaagaggaaggaaaacactaggagcttcaaagaaggagtctctct 497  Q
    ||||||| |||||||||||| |  || ||||||||||||||| | ||||||||||||    
T  34479620 aatgaagtggttcaagaggatgacaagcactaggagcttcaagggaggagtctctct 34479564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 93605 - 93692
Alignment:
Q  138 gagcgctgctaaatccagcgacaattcttttcaagaaaattccacgaagtacaatattgctttaataaaacgtgcttaaaccgctcaat 226  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||| | || |||| |||||||||||||  |||||||||||||    
T  93605 gagcgctgctaaatccagcgacaattcttttcccgaaaattccacgaagtgc-attttgccttaataaaacgtggctaaaccgctcaat 93692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 138 - 226
Target Start/End: Complemental strand, 40872677 - 40872590
Alignment:
Q  138 gagcgctgctaaatccagcgacaattcttttcaagaaaattccacgaagtacaatattgctttaataaaacgtgcttaaaccgctcaat 226  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||| | || |||| |||||||||||||  |||||||||||||    
T  40872677 gagcgctgctaaatccagcgacaattcttttcccgaaaattccacgaagtgc-attttgccttaataaaacgtggctaaaccgctcaat 40872590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 444 - 496
Target Start/End: Complemental strand, 2454844 - 2454792
Alignment:
Q  444 gaagcggttcaagaggaaggaaaacactaggagcttcaaagaaggagtctctc 496  Q
    ||||||||||||||||||||||| || |||||||||||| ||||| |||||||    
T  2454844 gaagcggttcaagaggaaggaaagcattaggagcttcaaggaaggggtctctc 2454792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 441 - 497
Target Start/End: Original strand, 9863333 - 9863389
Alignment:
Q  441 aatgaagcggttcaagaggaaggaaaacactaggagcttcaaagaaggagtctctct 497  Q
    ||||||||||||| ||||||||| || ||||| ||||||||||| ||||||||||||    
T  9863333 aatgaagcggttcgagaggaaggcaagcactatgagcttcaaaggaggagtctctct 9863389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 444 - 497
Target Start/End: Original strand, 5221620 - 5221673
Alignment:
Q  444 gaagcggttcaagaggaaggaaaacactaggagcttcaaagaaggagtctctct 497  Q
    |||||||||||||||||||| || || |||||||||||| | ||||||||||||    
T  5221620 gaagcggttcaagaggaaggcaagcattaggagcttcaagggaggagtctctct 5221673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 444 - 493
Target Start/End: Complemental strand, 5485118 - 5485069
Alignment:
Q  444 gaagcggttcaagaggaaggaaaacactaggagcttcaaagaaggagtct 493  Q
    ||||||||||||||||||| ||| ||||||||||||||| | ||||||||    
T  5485118 gaagcggttcaagaggaagaaaagcactaggagcttcaagggaggagtct 5485069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 441 - 482
Target Start/End: Complemental strand, 8158483 - 8158442
Alignment:
Q  441 aatgaagcggttcaagaggaaggaaaacactaggagcttcaa 482  Q
    ||||||| ||||||||||||||| ||||||||||||||||||    
T  8158483 aatgaagtggttcaagaggaaggcaaacactaggagcttcaa 8158442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 444 - 497
Target Start/End: Complemental strand, 9501467 - 9501414
Alignment:
Q  444 gaagcggttcaagaggaaggaaaacactaggagcttcaaagaaggagtctctct 497  Q
    ||||||||||||||||||||||| |||| |||||||||| | |||| |||||||    
T  9501467 gaagcggttcaagaggaaggaaatcactgggagcttcaagggaggattctctct 9501414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 479
Target Start/End: Complemental strand, 8038538 - 8038503
Alignment:
Q  444 gaagcggttcaagaggaaggaaaacactaggagctt 479  Q
    |||| |||||||||||||||||||||||||||||||    
T  8038538 gaagtggttcaagaggaaggaaaacactaggagctt 8038503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 497
Target Start/End: Original strand, 4900958 - 4901011
Alignment:
Q  444 gaagcggttcaagaggaaggaaaacactaggagcttcaaagaaggagtctctct 497  Q
    ||||||||||||||| |||| || ||||||||||||||||| ||| || |||||    
T  4900958 gaagcggttcaagagaaaggcaagcactaggagcttcaaaggaggtgtttctct 4901011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 328 - 417
Target Start/End: Complemental strand, 24537580 - 24537491
Alignment:
Q  328 tttaaaattaagtgcaaccttatctttgttaggaaattttctcgaacttgttattattgtgtggaataggtaaccatggaagcaaccaaa 417  Q
    |||||||| ||  |||| |||||  |||||||||||||||||||||| ||  ||||||||||| ||||||||||||||||| ||||||||    
T  24537580 tttaaaatcaatcgcaaacttattattgttaggaaattttctcgaacctgcaattattgtgtgaaataggtaaccatggaatcaaccaaa 24537491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 444 - 497
Target Start/End: Original strand, 24851494 - 24851547
Alignment:
Q  444 gaagcggttcaagaggaaggaaaacactaggagcttcaaagaaggagtctctct 497  Q
    |||||||||||||||||||| ||||||||| |||||||| || ||||| |||||    
T  24851494 gaagcggttcaagaggaaggcaaacactagaagcttcaaggagggagtttctct 24851547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 445 - 497
Target Start/End: Complemental strand, 30487335 - 30487283
Alignment:
Q  445 aagcggttcaagaggaaggaaaacactaggagcttcaaagaaggagtctctct 497  Q
    ||||||||||||||||||| ||||||||| |||||||| | |||||| |||||    
T  30487335 aagcggttcaagaggaaggcaaacactagtagcttcaagggaggagtttctct 30487283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 497
Target Start/End: Complemental strand, 27305279 - 27305232
Alignment:
Q  450 gttcaagaggaaggaaaacactaggagcttcaaagaaggagtctctct 497  Q
    |||||||||||||| ||||||||||| |||||| ||| ||||||||||    
T  27305279 gttcaagaggaaggcaaacactaggatcttcaaggaatgagtctctct 27305232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 495
Target Start/End: Complemental strand, 31015107 - 31015056
Alignment:
Q  444 gaagcggttcaagaggaaggaaaacactaggagcttcaaagaaggagtctct 495  Q
    |||||||||||||||||||| |||| |||||||| |||||  ||||||||||    
T  31015107 gaagcggttcaagaggaaggcaaacgctaggagcatcaaatgaggagtctct 31015056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 497
Target Start/End: Original strand, 24114834 - 24114887
Alignment:
Q  444 gaagcggttcaagaggaaggaaaacactaggagcttcaaagaaggagtctctct 497  Q
    |||||||||||||||||||| || ||||||||||||| | | |||||| |||||    
T  24114834 gaagcggttcaagaggaaggcaaccactaggagcttctagggaggagtttctct 24114887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 357 - 417
Target Start/End: Original strand, 26825904 - 26825964
Alignment:
Q  357 taggaaattttctcgaacttgttattattgtgtggaataggtaaccatggaagcaaccaaa 417  Q
    |||||| |||| ||||| |||  ||||||||||| |||||||||| |||||| ||||||||    
T  26825904 taggaatttttttcgaagttgcaattattgtgtgaaataggtaacaatggaatcaaccaaa 26825964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 341 - 424
Target Start/End: Complemental strand, 11224131 - 11224049
Alignment:
Q  341 gcaaccttatctttgttaggaaattttctcgaacttgttattattgtgtggaataggtaaccatggaagcaaccaaagacgcac 424  Q
    ||||| ||||||||||||||||||||  ||||||| || ||||||||||| | ||| |||||||| ||||||||||||||||||    
T  11224131 gcaacattatctttgttaggaaattta-tcgaactagtgattattgtgtgaattagctaaccatgaaagcaaccaaagacgcac 11224049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 444 - 498
Target Start/End: Original strand, 13907216 - 13907270
Alignment:
Q  444 gaagcggttcaagaggaaggaaaacactaggagcttcaaagaaggagtctctcta 498  Q
    |||||||||||||||||||| || ||||||||||||||| |||| ||||||||||    
T  13907216 gaagcggttcaagaggaaggcaagcactaggagcttcaaggaagtagtctctcta 13907270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 364 - 417
Target Start/End: Original strand, 16230717 - 16230770
Alignment:
Q  364 ttttctcgaacttgttattattgtgtggaataggtaaccatggaagcaaccaaa 417  Q
    ||||||||||||||  ||||||||||| ||||||||||||||||  ||||||||    
T  16230717 ttttctcgaacttgcaattattgtgtgaaataggtaaccatggactcaaccaaa 16230770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 417
Target Start/End: Original strand, 3398548 - 3398623
Alignment:
Q  342 caaccttatctttgttaggaaattttctcgaacttgttattattgtgtggaataggtaaccatggaagcaaccaaa 417  Q
    |||||||||  | ||||||||||| |||| ||||||  ||||||||||| ||||||||| |||| || ||||||||    
T  3398548 caaccttattctcgttaggaaattatctcaaacttgcaattattgtgtgaaataggtaatcatgtaatcaaccaaa 3398623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 405
Target Start/End: Original strand, 3387140 - 3387190
Alignment:
Q  355 gttaggaaattttctcgaacttgttattattgtgtggaataggtaaccatg 405  Q
    ||||||||||||||||||| |||  ||||||||||| ||||||||| ||||    
T  3387140 gttaggaaattttctcgaatttgaaattattgtgtgaaataggtaatcatg 3387190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 494
Target Start/End: Original strand, 25779547 - 25779597
Alignment:
Q  444 gaagcggttcaagaggaaggaaaacactaggagcttcaaagaaggagtctc 494  Q
    ||||||||||||||||||||||  |||||||| ||| || |||||||||||    
T  25779547 gaagcggttcaagaggaaggaaggcactaggaactttaaggaaggagtctc 25779597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 29007502 - 29007570
Alignment:
Q  262 ggtagcttgtattgtacggttgtgaagaattcgtgataaaagttatcgcaatatcaagcattacgcttt 330  Q
    ||||||||||| ||| | ||||||||| |||||||||||||||| |||| |||| ||||||||||||||    
T  29007502 ggtagcttgtactgtgcagttgtgaagcattcgtgataaaagttgtcgcgatattaagcattacgcttt 29007570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 350 - 417
Target Start/End: Original strand, 20550067 - 20550134
Alignment:
Q  350 tctttgttaggaaattttctcgaacttgttattattgtgtggaataggtaaccatggaagcaaccaaa 417  Q
    |||||||||||||  ||||||||||||   ||||||||||| ||||||||||||||||  ||||||||    
T  20550067 tctttgttaggaatatttctcgaacttacaattattgtgtgaaataggtaaccatggactcaaccaaa 20550134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 444 - 497
Target Start/End: Original strand, 19762205 - 19762258
Alignment:
Q  444 gaagcggttcaagaggaaggaaaacactaggagcttcaaagaaggagtctctct 497  Q
    ||||| |||||||||||||| || ||||||||||||||| | ||||||||||||    
T  19762205 gaagcagttcaagaggaaggcaagcactaggagcttcaagggaggagtctctct 19762258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 364 - 417
Target Start/End: Original strand, 24187819 - 24187872
Alignment:
Q  364 ttttctcgaacttgttattattgtgtggaataggtaaccatggaagcaaccaaa 417  Q
    ||||||||||||||  ||||||||||| ||||||||||||| ||| ||||||||    
T  24187819 ttttctcgaacttgaaattattgtgtgaaataggtaaccattgaatcaaccaaa 24187872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 496
Target Start/End: Original strand, 20103516 - 20103567
Alignment:
Q  445 aagcggttcaagaggaaggaaaacactaggagcttcaaagaaggagtctctc 496  Q
    ||||||||||||||||||| | ||||||||||| |||| | |||||||||||    
T  20103516 aagcggttcaagaggaaggcagacactaggagcatcaagggaggagtctctc 20103567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 497
Target Start/End: Original strand, 23013662 - 23013715
Alignment:
Q  444 gaagcggttcaagaggaaggaaaacactaggagcttcaaagaaggagtctctct 497  Q
    |||| ||||||||||||||  ||  ||||||||||||||||||| |||||||||    
T  23013662 gaagaggttcaagaggaagacaagtactaggagcttcaaagaagaagtctctct 23013715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 444 - 496
Target Start/End: Complemental strand, 28279783 - 28279731
Alignment:
Q  444 gaagcggttcaagaggaaggaaaacactaggagcttcaaagaaggagtctctc 496  Q
    ||||||||| |||||||||| ||||||||||||||| || | |||| ||||||    
T  28279783 gaagcggtttaagaggaaggcaaacactaggagctttaagggaggactctctc 28279731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0427 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 342 - 427
Target Start/End: Original strand, 4736 - 4821
Alignment:
Q  342 caaccttatctttgttaggaaattttctcgaacttgttattattgtgtggaataggtaaccatggaagcaaccaaagacgcacaag 427  Q
    ||||||||  ||||||||||||||||||||||||||  | ||| ||||| |||| || | ||||||| |||||||| | |||||||    
T  4736 caaccttaattttgttaggaaattttctcgaacttgcaactatggtgtgaaatatgttagcatggaatcaaccaaaaaggcacaag 4821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 444 - 497
Target Start/End: Complemental strand, 23511 - 23458
Alignment:
Q  444 gaagcggttcaagaggaaggaaaacactaggagcttcaaagaaggagtctctct 497  Q
    ||||||||| |||||||||||||||||||| |||||||| | | ||||||||||    
T  23511 gaagcggtttaagaggaaggaaaacactagtagcttcaagggatgagtctctct 23458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 444 - 496
Target Start/End: Complemental strand, 27910370 - 27910318
Alignment:
Q  444 gaagcggttcaagaggaaggaaaacactaggagcttcaaagaaggagtctctc 496  Q
    |||| ||||||||||||||| ||||||| |||||||||| | |||||||||||    
T  27910370 gaagtggttcaagaggaaggcaaacacttggagcttcaagggaggagtctctc 27910318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 440 - 482
Target Start/End: Complemental strand, 26581111 - 26581069
Alignment:
Q  440 gaatgaagcggttcaagaggaaggaaaacactaggagcttcaa 482  Q
    |||| ||||||||||||||||||| || |||||||||||||||    
T  26581111 gaataaagcggttcaagaggaaggcaagcactaggagcttcaa 26581069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 494
Target Start/End: Original strand, 20033730 - 20033779
Alignment:
Q  445 aagcggttcaagaggaaggaaaacactaggagcttcaaagaaggagtctc 494  Q
    ||||||||||||||||||| || || |||||||||||| | |||||||||    
T  20033730 aagcggttcaagaggaaggcaaccattaggagcttcaagggaggagtctc 20033779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 496
Target Start/End: Complemental strand, 25425815 - 25425766
Alignment:
Q  447 gcggttcaagaggaaggaaaacactaggagcttcaaagaaggagtctctc 496  Q
    ||||||||||||||||| || | |||||||| |||| |||||||||||||    
T  25425815 gcggttcaagaggaaggcaagcgctaggagcgtcaatgaaggagtctctc 25425766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 390
Target Start/End: Original strand, 29652690 - 29652727
Alignment:
Q  353 ttgttaggaaattttctcgaacttgttattattgtgtg 390  Q
    |||||||||||||||||||||||||  |||||||||||    
T  29652690 ttgttaggaaattttctcgaacttgcaattattgtgtg 29652727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 493
Target Start/End: Original strand, 12556737 - 12556789
Alignment:
Q  441 aatgaagcggttcaagaggaaggaaaacactaggagcttcaaagaaggagtct 493  Q
    |||||||||||||||||| |||| || | ||||||||||||| | ||||||||    
T  12556737 aatgaagcggttcaagagaaaggcaagcgctaggagcttcaagggaggagtct 12556789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 445 - 497
Target Start/End: Complemental strand, 22623166 - 22623114
Alignment:
Q  445 aagcggttcaagaggaaggaaaacactaggagcttcaaagaaggagtctctct 497  Q
    |||||||| |||||||||| || | ||||||||||||||| |||||| |||||    
T  22623166 aagcggtttaagaggaaggcaagccctaggagcttcaaaggaggagtttctct 22623114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 138 - 226
Target Start/End: Complemental strand, 8792 - 8705
Alignment:
Q  138 gagcgctgctaaatccagcgacaattcttttcaagaaaattccacgaagtacaatattgctttaataaaacgtgcttaaaccgctcaat 226  Q
    |||| |||||| ||||||||||||| ||||||   ||||||||| ||||| || | || || ||||||||||||  |||||||||||||    
T  8792 gagcactgctagatccagcgacaat-cttttctcaaaaattccatgaagtgcatttttactataataaaacgtggctaaaccgctcaat 8705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University