View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13125_low_14 (Length: 501)
Name: NF13125_low_14
Description: NF13125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13125_low_14 |
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| [»] scaffold0268 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: scaffold0268 (Bit Score: 153; Significance: 7e-81; HSPs: 1)
Name: scaffold0268
Description:
Target: scaffold0268; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 337 - 501
Target Start/End: Original strand, 22727 - 22891
Alignment:
| Q |
337 |
ctcattgaaacatatataagcgattctgctgaaaagaatcgcttatttcatgcaattgagacaattccatgtatcgcgaaaaaggctgattgggctatga |
436 |
Q |
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| T |
22727 |
ctcattgaaacatatataagcgattctgctgaaaagaatcgcttatttcatgcaattgagacaattccatgtatcgcgaaaaaggctgattgggcaatga |
22826 |
T |
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| Q |
437 |
aatggatcgattcaagcgattcttttgctgaaagaattgttgcatttgcttgtgtagaaggaatt |
501 |
Q |
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| T |
22827 |
aatggattgattcaagcgattcttttgctgaaagaatcgttgcatttgcttgtgtagaaggaatt |
22891 |
T |
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Target: chr7 (Bit Score: 153; Significance: 7e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 337 - 501
Target Start/End: Complemental strand, 10197361 - 10197197
Alignment:
| Q |
337 |
ctcattgaaacatatataagcgattctgctgaaaagaatcgcttatttcatgcaattgagacaattccatgtatcgcgaaaaaggctgattgggctatga |
436 |
Q |
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| T |
10197361 |
ctcattgaaacatatataagcgattctgctgaaaagaatcgcttatttcatgcaattgagacaattccatgtatcgcgaaaaaggctgattgggcaatga |
10197262 |
T |
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| Q |
437 |
aatggatcgattcaagcgattcttttgctgaaagaattgttgcatttgcttgtgtagaaggaatt |
501 |
Q |
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| T |
10197261 |
aatggattgattcaagcgattcttttgctgaaagaatcgttgcatttgcttgtgtagaaggaatt |
10197197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 118; Significance: 5e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 343 - 500
Target Start/End: Original strand, 19457244 - 19457401
Alignment:
| Q |
343 |
gaaacatatataagcgattctgctgaaaagaatcgcttatttcatgcaattgagacaattccatgtatcgcgaaaaaggctgattgggctatgaaatgga |
442 |
Q |
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| T |
19457244 |
gaaacgtatataagcgattccgctgaaaagaatcgcttatttcatgcaattgaaacaattccatgtatcgcgaagaaagctgattgggcgatgaaatgga |
19457343 |
T |
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| Q |
443 |
tcgattcaagcgattcttttgctgaaagaattgttgcatttgcttgtgtagaaggaat |
500 |
Q |
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| T |
19457344 |
tcgattcaagcgattcttttgcagaaagaatcgttgcgtttgcttgtgttgaaggaat |
19457401 |
T |
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Target: chr8 (Bit Score: 106; Significance: 8e-53; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 110 - 223
Target Start/End: Complemental strand, 36846214 - 36846101
Alignment:
| Q |
110 |
taagtgtatcccctaagttcttcactactgagctaattaaatcaagtcaataaggtaatagaaccataccaaccatctcactcaactagctagaatgaaa |
209 |
Q |
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| T |
36846214 |
taagtgtatcccctaagttcttcactactgagctaattaaatcaagtcaataaggtaatagaaccataccaaccatctcactcaactagctagaataaaa |
36846115 |
T |
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| Q |
210 |
aaccgtataaaact |
223 |
Q |
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| T |
36846114 |
aaccgtttaaaact |
36846101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 220 - 332
Target Start/End: Complemental strand, 36846069 - 36845957
Alignment:
| Q |
220 |
aactgttctttaaatctctccacggcctttaactatataaccaaggctcctctctattctaccattagttatcgatgtgggacaataaactccgtcattc |
319 |
Q |
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| T |
36846069 |
aactgttctttaaatctctccacggcctttaactatataatcaaggctcctctctattctaccattagttatcgatgtgggacaataaactccgtcattc |
36845970 |
T |
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| Q |
320 |
ttcggtctgtgct |
332 |
Q |
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| T |
36845969 |
ttcggtctttgct |
36845957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 343 - 501
Target Start/End: Complemental strand, 25025847 - 25025689
Alignment:
| Q |
343 |
gaaacatatataagcgattctgctgaaaagaatcgcttatttcatgcaattgagacaattccatgtatcgcgaaaaaggctgattgggctatgaaatgga |
442 |
Q |
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| T |
25025847 |
gaaacgtatataagcgattctgctgaaaagaatcgattatttcacgcaattgacacaattccgtgtattgctaagaaagctgattgggctttgaaatgga |
25025748 |
T |
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| Q |
443 |
tcgattcaagcgattcttttgctgaaagaattgttgcatttgcttgtgtagaaggaatt |
501 |
Q |
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| T |
25025747 |
tcgattcaagcgattcttttgcagaaagaatcgttgctttcgcttgtgttgaaggaatt |
25025689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 273 - 332
Target Start/End: Complemental strand, 36847884 - 36847825
Alignment:
| Q |
273 |
ctattctaccattagttatcgatgtgggacaataaactccgtcattcttcggtctgtgct |
332 |
Q |
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| T |
36847884 |
ctattctagcgttagttatcgatgtgggacaataaactcagtcattcttcggtatgtgct |
36847825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 36846266 - 36846211
Alignment:
| Q |
18 |
ctttgatcattgtaagggannnnnnnaacctagttgtctgctgtcatgatattaag |
73 |
Q |
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| T |
36846266 |
ctttgatcattgtaagggatttttttaacctagctgtctgctgtcatgatattaag |
36846211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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